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wot

A software package for analyzing snapshots of developmental processes

https://github.com/broadinstitute/wot

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    3 of 9 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.9%) to scientific vocabulary

Keywords

optimal-transport rna-seq single-cell time-series trajectory
Last synced: 6 months ago · JSON representation

Repository

A software package for analyzing snapshots of developmental processes

Basic Info
Statistics
  • Stars: 146
  • Watchers: 11
  • Forks: 36
  • Open Issues: 36
  • Releases: 0
Topics
optimal-transport rna-seq single-cell time-series trajectory
Created over 8 years ago · Last pushed over 3 years ago
Metadata Files
Readme License

README.md

Read the documentation.

Owner

  • Name: Broad Institute
  • Login: broadinstitute
  • Kind: organization
  • Location: Cambridge, MA

Broad Institute of MIT and Harvard

GitHub Events

Total
  • Issues event: 2
  • Watch event: 7
  • Fork event: 3
Last Year
  • Issues event: 2
  • Watch event: 7
  • Fork event: 3

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 1,204
  • Total Committers: 9
  • Avg Commits per committer: 133.778
  • Development Distribution Score (DDS): 0.266
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
jgould j****d@b****g 884
David ROBIN d****7@g****m 266
Geoffrey Schiebinger g****f@b****g 39
faro1219 3****9 5
Anton Afanassiev a****a@y****a 4
Joshua Gould j****d 2
sbrt s****t@g****m 2
Felix Raimundo f****o@g****m 1
frymor y****z@b****e 1
Committer Domains (Top 20 + Academic)
broadinstitute.org: 2 biochem.mpg.de: 1 google.com: 1 yahoo.ca: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 81
  • Total pull requests: 23
  • Average time to close issues: 29 days
  • Average time to close pull requests: about 7 hours
  • Total issue authors: 47
  • Total pull request authors: 10
  • Average comments per issue: 2.78
  • Average comments per pull request: 0.17
  • Merged pull requests: 19
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: 42 minutes
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • yeroslaviz (14)
  • rosshandler (4)
  • YubinXie (4)
  • amanda-cruz (3)
  • rojuvalu (3)
  • concatenize (3)
  • annrosebright (3)
  • hahia (3)
  • ChengTao2017 (2)
  • ShouWenWang (2)
  • jma1991 (2)
  • MikeDMorgan (2)
  • mbk0asis (2)
  • WeihangChen0 (1)
  • wulabupenn (1)
Pull Request Authors
  • robindar (10)
  • faro1219 (3)
  • joshua-gould (2)
  • matthieuheitz (2)
  • Jabbath (1)
  • WeilerP (1)
  • yeroslaviz (1)
  • sbrt (1)
  • gamazeps (1)
  • dongzhuoer (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 380 last-month
  • Total docker downloads: 63
  • Total dependent packages: 1
  • Total dependent repositories: 2
  • Total versions: 18
  • Total maintainers: 1
pypi.org: wot

Optimal transport for time-course single cell data

  • Versions: 18
  • Dependent Packages: 1
  • Dependent Repositories: 2
  • Downloads: 380 Last month
  • Docker Downloads: 63
Rankings
Dependent packages count: 4.8%
Stargazers count: 6.4%
Forks count: 6.9%
Average: 8.6%
Dependent repos count: 11.5%
Downloads: 13.4%
Maintainers (1)
jgould
Last synced: 6 months ago

Dependencies

environment.yml pypi
  • wot *
sdocs/requirements.txt pypi
  • flask *
  • h5py *
  • pandas *
  • pyyaml *
  • scipy *
  • setuptools *
  • sphinxcontrib-napoleon *
docs/Gemfile rubygems
  • github-pages >= 0 development