bgnn_core_workflow - Use latest containers

Updates to use the latest object detection and segmentation containers that now include models downloaded from HuggingFace.

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Published by johnbradley over 2 years ago

bgnn_core_workflow - Version 1.0.0

Release created to populate Zenodo.

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Published by johnbradley almost 3 years ago

bgnn_core_workflow - Simplifies workflow and other fixes

What's Changed

• updating section 1 of readme by @megbalk in https://github.com/hdr-bgnn/BGNNCoreWorkflow/pull/30
• Improve CSV parsing by @johnbradley in https://github.com/hdr-bgnn/BGNNCoreWorkflow/pull/32
• Add fixes from Minnow Traits by @johnbradley in https://github.com/hdr-bgnn/BGNNCoreWorkflow/pull/37
• Transforms metadata and streamlines the workflow by @johnbradley in https://github.com/hdr-bgnn/BGNNCoreWorkflow/pull/41
• Simplify Snakefile by @johnbradley in https://github.com/hdr-bgnn/BGNNCoreWorkflow/pull/43

New Contributors

• @megbalk made their first contribution in https://github.com/hdr-bgnn/BGNNCoreWorkflow/pull/30

Full Changelog: https://github.com/hdr-bgnn/BGNNCoreWorkflow/compare/0.0.16...1.0.0

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Published by johnbradley about 3 years ago

bgnn_core_workflow - more fix in Crop_image_main.py

Problem with library import which was not updated

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Published by thibaulttabarin over 3 years ago

bgnn_core_workflow - Crop_image_main Truncated image fixed

in Cropimagemain.py accept truncated image like INHSFISH47071.jpg

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Published by thibaulttabarin over 3 years ago

bgnn_core_workflow - new 0.0.14 release updated Crop_image_main.py

Fix truncated image error

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Published by thibaulttabarin over 3 years ago

bgnn_core_workflow - more fixing... typo

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Published by thibaulttabarin over 3 years ago

bgnn_core_workflow - fix morphology_main.py for scale output

Change the order of input in Morphology_main.py to fix problem in Snakemake

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Published by thibaulttabarin over 3 years ago

bgnn_core_workflow - fix keyerror has_ruler

• fix keyerror has_ruler
• chmod of mergefilesmain.py

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Published by thibaulttabarin over 3 years ago

bgnn_core_workflow - fix usage and add Merge_files_main.py

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Published by thibaulttabarin over 3 years ago

bgnn_core_workflow - another one

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Published by thibaulttabarin over 3 years ago

bgnn_core_workflow - Change name of the container

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Published by thibaulttabarin over 3 years ago

bgnn_core_workflow - fix interpretor in Crop_imag_main.py

fix interpretor in Cropimagmain.py

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Published by thibaulttabarin over 3 years ago

bgnn_core_workflow - Try to fix missing file

Try to fix missing file

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Published by thibaulttabarin over 3 years ago

bgnn_core_workflow - second try on 0.0.1

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Published by thibaulttabarin over 3 years ago