morphology-analysis - Version 1.0.0

Release created to populate Zenodo.

- Jupyter Notebook
Published by johnbradley about 3 years ago

morphology-analysis - Fixes TypeError

What's Changed

• Fix TypeError by @johnbradley in https://github.com/hdr-bgnn/Morphology-analysis/pull/47

- Jupyter Notebook
Published by johnbradley over 3 years ago

morphology-analysis - Add ruler information and command line options

What's Changed

• Add ruler information for presence absence issue #38 by @thibaulttabarin in https://github.com/hdr-bgnn/Morphology-analysis/pull/39
• update the notebook with the trait_class changes by @thibaulttabarin in https://github.com/hdr-bgnn/Morphology-analysis/pull/42
• Improve container tagging by @johnbradley in https://github.com/hdr-bgnn/Morphology-analysis/pull/44
• review README by @megbalk in https://github.com/hdr-bgnn/Morphology-analysis/pull/41
• Version presence absence by @thibaulttabarin in https://github.com/hdr-bgnn/Morphology-analysis/pull/36

Full Changelog: https://github.com/hdr-bgnn/Morphology-analysis/compare/0.2.0...0.3.0

- Jupyter Notebook
Published by johnbradley over 3 years ago

morphology-analysis - add functionality align fish

New functionality to align the fish before we measure morphology information. Split the code in Traits_class.py and create 3 classes: 1- for creating a segmented image object, align the fish and create masks dictionnary 2- for measurements, landmarks 3- for visualization tools

Updated the Morphologymain.py to match changes in the classes (contained in Traitsclass)

- Jupyter Notebook
Published by thibaulttabarin almost 4 years ago

morphology-analysis - Fix None value for scale

This release fix the [None] value in scale (key) to "None". This is for convenience when post processing the result in R.

- Jupyter Notebook
Published by thibaulttabarin almost 4 years ago

morphology-analysis - Release new feature in the dev version

This release contained the most advance code where new function have been featured. 1. Work with the new version of BGNN-trait-segmentation 0.0.5 which rescale to original image therefore the scale from the ruler should match the segmentation image.

1. Measurement label should match descriptions in the landmark.csv and measurement.csv

2. Fish angles have been added

Some part need improvement , better descript for the landmark and probably more bugs. This version release a container that we use to perform further test.

- Jupyter Notebook
Published by thibaulttabarin almost 4 years ago

morphology-analysis - First release at the end of dev

After some development period the first release. If it works, I will release a 0.1.0

- Jupyter Notebook
Published by thibaulttabarin almost 4 years ago