Recent Releases of bgnn-trait-segmentation
bgnn-trait-segmentation - Use models from Hugging Face
The docker container now includes the model from https://huggingface.co/imageomics/BGNN-trait-segmentation.
- Jupyter Notebook
Published by johnbradley over 2 years ago
bgnn-trait-segmentation - Dataverse Download version
In this release, the model weights for the 2 models we are using are store at osu on the datacommun. The model weights are downloaded using pydataverse python module.
- Jupyter Notebook
Published by thibaulttabarin over 3 years ago
bgnn-trait-segmentation - version with 3 main function options
Update of the main function: 3 fucntions, 3 modes: no rescale rescale to ratio rescale to origin
- Jupyter Notebook
Published by thibaulttabarin over 3 years ago
bgnn-trait-segmentation - change permission of segmentation_main.py
we change the permission of segmentationmain.py so the segmentationmain.py can be directly from the container using the following usage : singularity exec imagename.sif segmentationmain.py
- Jupyter Notebook
Published by thibaulttabarin over 3 years ago
bgnn-trait-segmentation - Change resize Interpolation
Fix the resize interpolation so that the segments of the different traits have hard edges. It removes intermediate values at the interface between 2 traits.
- Jupyter Notebook
Published by thibaulttabarin almost 4 years ago
bgnn-trait-segmentation - 1rs release for trait segmentation
This release contained the current working version of trait segmentation, Dockerfile to build the container via github action. For more detail refer to README.md
- Jupyter Notebook
Published by thibaulttabarin almost 4 years ago