crane - v0.2.0

New Functions and Functionality

• The tbl_demographics() function has been renamed to tbl_roche_summary() with the following updates. (#73).

  • Updated tbl_roche_summary() to convert cells with "0 (0.0%)" to "0".
  • Update the tbl_roche_summary() returned inputs list to match the tbl_roche_summary() argument inputs, whereas it previously returned the tbl_summary() inputs. (#31)
  • Changed the default header in tbl_roche_summary() tables from **Characteristic** to an empty string.
  • Fix in tbl_roche_summary() when a variable is all NA within a stratum. The zero count was displayed as "0 (NA%)" instead of "0". (#60)

• Added function tbl_hierarchical_rate_by_grade() to summarize adverse event rates by highest toxicity grade. (#46)

• Adding the modify_zero_recode() function that recodes "0 (0.0%)" to "0" in summary tables.

• Adding the modify_header_rm_md() function to remove bold and italic markdown syntax from the headers of a gtsummary table. (#53)

• Adding tbl_hierarchical_rate_and_count() and associated S3 method add_overall() to summarize hierarchical event rates and counts. (#36)

• Added tbl_survfit_quantiles() and add_overall.tbl_survfit_quantiles() to create a table of survival quantiles. (#19)

• Adding tbl_survfit_times() and add_overall.tbl_survfit_times()

• Adding tbl_baseline_chg() function. (#62)

• Added function tbl_shift() for easing the creation of shift tables. (#83)

• Added style_roche_percent() and label_roche_percent() functions.

• Added formatting functions style_roche_ratio() and label_roche_ratio(). (#91)

• Added variables and row_numbers arguments to the add_blank_rows() function. (#45)

• Re-coding 0 / 0 (NA%) to 0 / 0 in modify_zero_recode(). (#85)

  Other Updates

• Added an article giving an overview of the {crane} package. (#37)

• The {gtsummary} is now loaded with {crane}.

• Updated Roche theme to bold headers for flextable outputs.

• Updated Roche theme to include parentheses around Ns in header, and updated function defaults to include the parentheses in crane functions.

• Updated theme_gtsummary_roche() to further style results from gtsummary::tbl_hierarchical*() functions.

• Added theme_gtsummary_roche(font_size, print_egine) arguments to control the default font size and the print engine.

• Updated Roche theme to use style_roche_percent() as the default function to format percentages.

• Added additional {flextable} specs for theme_gtsummary_roche(). Mainly border line width (0.5) and footer font size (font_size - 1).

What's Changed

• Update scheduled.yaml by @ddsjoberg in https://github.com/insightsengineering/crane/pull/2
• add files for repo to match nest style by @ayogasekaram in https://github.com/insightsengineering/crane/pull/3
• setting up testing by @ddsjoberg in https://github.com/insightsengineering/crane/pull/15
• Adding startup messaging by @ddsjoberg in https://github.com/insightsengineering/crane/pull/10
• Release prep [skip vbump] by @ddsjoberg in https://github.com/insightsengineering/crane/pull/22
• Adding add_overall() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/32
• Attaching cards and cardx with crane by @ddsjoberg in https://github.com/insightsengineering/crane/pull/34
• Adding tbl_survfit_quantiles() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/23
• Add flx docx theme by @Melkiades in https://github.com/insightsengineering/crane/pull/35
• Add introduction article by @edelarua in https://github.com/insightsengineering/crane/pull/39
• adding new tests by @ddsjoberg in https://github.com/insightsengineering/crane/pull/42
• update forcats standalone script by @ayogasekaram in https://github.com/insightsengineering/crane/pull/44
• Add hierarchical tables/stratified nested tables article by @edelarua in https://github.com/insightsengineering/crane/pull/40
• Added add_overall.tbl_survfit_quantiles() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/49
• Add roche_pvalue() unit tests by @ddsjoberg in https://github.com/insightsengineering/crane/pull/51
• Addingtbl_survfit_times() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/50
• Adding tbl_ae_rate_and_count() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/47
• Adding strip_md_bold() and strip_md_italic() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/54
• Updates for tbl_hierarchical_rate_and_count() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/56
• add reference section for crane functions by @ayogasekaram in https://github.com/insightsengineering/crane/pull/58
• Addressing 0 (NA%) recoding issue by @ddsjoberg in https://github.com/insightsengineering/crane/pull/61
• Adding modify_header_rm_md() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/64
• Adding modify_zero_recode() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/66
• Header Updates by @ddsjoberg in https://github.com/insightsengineering/crane/pull/67
• accounting for add_overall() in add_hierarchical_count_row() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/70
• Adding ARD to add_hierarchical_count_row() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/71
• Rename tbl_demographics() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/74
• add roche_percent() function by @ayogasekaram in https://github.com/insightsengineering/crane/pull/68
• Adding theme arguments by @ddsjoberg in https://github.com/insightsengineering/crane/pull/76
• update theme for hierarchical tables by @ddsjoberg in https://github.com/insightsengineering/crane/pull/78
• Addition of rownumbers and explicit defaults for `addblank_rows` by @Melkiades in https://github.com/insightsengineering/crane/pull/75
• Update digits to NULL in tblhierarchicalrateandcount by @ayogasekaram in https://github.com/insightsengineering/crane/pull/82
• Add tbl_hierarchical_rate_by_grade() by @edelarua in https://github.com/insightsengineering/crane/pull/52
• chore: Add CI pipeline for internal sync by @cicdguy in https://github.com/insightsengineering/crane/pull/87
• Adding tbl_shift() by @ddsjoberg in https://github.com/insightsengineering/crane/pull/84
• Add parentheses around Ns by @ddsjoberg in https://github.com/insightsengineering/crane/pull/90
• Add parentheses to hard-coded header N strings by @edelarua in https://github.com/insightsengineering/crane/pull/95
• Bolding headers by @Melkiades in https://github.com/insightsengineering/crane/pull/100
• Adding add_hierarchical_count_row(data_process) argument by @ddsjoberg in https://github.com/insightsengineering/crane/pull/102
• modify_zero_recode() to recode 0 / nn (0%) to 0 / nn by @ddsjoberg in https://github.com/insightsengineering/crane/pull/103
• cards fn rename updates by @ddsjoberg in https://github.com/insightsengineering/crane/pull/105
• fix fontsize by @Melkiades in https://github.com/insightsengineering/crane/pull/104
• change from baseline function draft by @ayogasekaram in https://github.com/insightsengineering/crane/pull/65
• add gtsummary prefix by @ayogasekaram in https://github.com/insightsengineering/crane/pull/109
• Adding add_blank_row(variable_level) argument by @ddsjoberg in https://github.com/insightsengineering/crane/pull/110
• tbl_listing() Review Proposed Updates by @ddsjoberg in https://github.com/insightsengineering/crane/pull/111
• Adding *roche_ratio() functions by @ddsjoberg in https://github.com/insightsengineering/crane/pull/112

New Contributors

• @ayogasekaram made their first contribution in https://github.com/insightsengineering/crane/pull/3
• @Melkiades made their first contribution in https://github.com/insightsengineering/crane/pull/35
• @edelarua made their first contribution in https://github.com/insightsengineering/crane/pull/39
• @cicdguy made their first contribution in https://github.com/insightsengineering/crane/pull/87

Full Changelog: https://github.com/insightsengineering/crane/commits/v0.2.0

- R
Published by insights-engineering-bot 9 months ago