Recent Releases of neoniso
neoniso - NEONiso 0.7.2
- Fixes a bug that causes the managelocalec_archive function to miss a large set of files that are on the remote server.
- R
Published by rfiorella about 1 year ago
neoniso - NEONiso 0.7.1
- Substantial upgrades to package documentation.
- The name "Bowling2003" in methods and functions has been deprecated in favor of "gainoffset." This change was made primarily to improve clarity of what the methods actually do. Code that uses the old "Bowling2003" nomenclature will continue to work until at least version 0.8.0, but will issue a deprecation warning.
- R
Published by rfiorella about 1 year ago
neoniso - 0.6.4 CRAN Release
Small patch adding a minimum number of observations argument to the calibrate_carbon functions.
- R
Published by rfiorella over 2 years ago
neoniso - 0.6.3 CRAN Release
Small patch to address change requested by CRAN. Issue with package documentation introduced in ROxygen 7.0.0: https://github.com/r-lib/roxygen2/issues/1491.
- R
Published by rfiorella over 2 years ago
neoniso - 0.6.2 CRAN Release
- This will be the last release that has the *bymonth functions! They have deprecated for about a year, and will be removed before next release. Use calibratecarbon (mature) or calibratewater (experimental).
- Adds an argument to managelocalEC_archive that allows checking out specific releases (e.g., RELEASE-2023) instead of release + provisional. To check out all data, set to NULL.
- Exports get_Rstd, a helper function to return the heavy-to-light isotope ratio of the relevant international standard.
- Allows use of the useFasttime argument in dependency neonUtilities::stackEddy, for neonUtilities >= 2.3.0. stackEddy(useFasttime = TRUE) is ~3x faster on large datasets than stackEddy(useFasttime = FALSE), which improves performance significantly when trying to work on larger timeseries in the NEON archives.
- Adds new cross-validation error metrics to linear regression calibration method for carbon. Note that these metrics are still to be considered experimental and may continue to change.
- R
Published by rfiorella over 2 years ago
neoniso - 0.6.1 CRAN release
Updates in 0.6.1:
- Exports new helper function for getting sites with water isotopes, waterisotopesites().
- The reference_corrections vignette was blank in the previous release - it is updated in this release (#81)
- Makes select functions used internally consistent with upcoming changes to tidyselect (h/t Hadley Wickham)
- R
Published by rfiorella over 3 years ago
neoniso - 0.6.0 CRAN release
Marking the release for v. 0.6.0 that was sent to CRAN.
Major updates: * An experimental calibration routine for water isotopes has been added. It does have some known issues (e.g., no correction is made for concentration dependence of the analyzers yet), and any data produced from this function should be considered provisional. * Added capability to plot data used in carbon calibration regression in order to help identify periods where calibration parameters seem to be okay, but quality of calibrated data is degraded. * Added cross-validation error estimates to carbon calibration routines. * The calibratecarbonbymonth() function has been marked as deprecated, but will be removed no earlier than version 0.7.0 or the end of 2022. The more flexible calibratecarbon() function should be used. * A bug that generated non-nonsensical CO2 and d13C values has been fixed (#72). * The calibratecarbon() function now also provides calibrated values for reference material measurement. These are useful for determining calibration error when one of the reference materials is omitted from the calibration (e.g., generate calibration relationships to the high and medium standards, then estimate error as the difference between calibrated measurement and known reference values). * Reduced the number of tests that run on CRAN to minimize compute resources requested. * Made a function that corrects a few mismatched reference values more visible, and added a few more instances where reference data needs to be corrected.
- R
Published by rfiorella over 3 years ago
neoniso - Honeycomb
*This update takes advantage of upgrades to the stackEddy function in neonUtilities 2.1.1, which allows the calibration routines to run more efficiently on NEON's HDF5 files. For example, calibrate_carbon(), runs ~2x faster if neonUtilities 2.1.1 is used instead of earlier versions.
- R
Published by rfiorella over 4 years ago
neoniso - Sundial
Adds the calibratecarbon() function, which can be used to generate monthly output files or can be used to bundle all of the months of data available for an individual site into a single file. In the long-term, calibratecarbon() will be the ‘workhorse’ function for NEON’s carbon data, and calibratecarbonbymonth will be deprecated in a future release.
- R
Published by rfiorella over 4 years ago
neoniso - Olympus
This release is the first version of NEONiso to be on CRAN. Major changes from 0.3: - simplified carbon calibration routines, to make the code more readable and testable. - calibratecarbonBowling2003 and calibratecarbonlinreg have been removed, and combined into a single calibratecarbonbymonth function, with the method used specified in a function argument. - the diagnostic packages have been spun out to their own package, as I'm not sure of their broad utility. They can be found on github at github.com/rfiorella/neonIsoDiag - new vignette provides an example workflow of how these functions are meant to be used.
- R
Published by rfiorella almost 5 years ago
neoniso - Farnsworth
Release and code freeze for revised manuscript looking at carbon calibration techniques. Notable improvements include: a) implementation of routines to correct known/suspected bad reference values, b) initial version of a function to help manage a local NEON EC archive (and prune duplicate site months when they occur due to different publication dates).
- R
Published by rfiorella over 5 years ago
neoniso - Ophir
Incremental release fixing several "cosmetic" issues: 1) adds travis CI and Zenodo DOI hooks. 2) improves code style consistency w/ lintr::lint_package() to improve readability. 3) fixes NAMESPACE warnings and notes generated by R CMD CHECK (though a few persist re: global variable bindings and some Roxygen tags).
- R
Published by rfiorella almost 6 years ago