Recent Releases of microsec
microsec - version 1.2.8
to handle two chromosome formats; "chr1" and "1".
- R
Published by MANO-B almost 5 years ago
microsec - version 1.2.7
Stable version for the revised manuscript. Palindromic sequence is searched for 200 bases around the mutations.
- R
Published by MANO-B about 5 years ago
microsec - Version 1.2.6
An error for deletion mutation analysis in multiple sample analyses are resolved.
- R
Published by MANO-B about 5 years ago
microsec - Version 1.2.5
MicroSEC.R has been improved to dramatically reduce memory usage. The speed of analysis is also improved by deleting parts of the BAM file that are not relevant to the mutation prior to analysis by MicroSEC. You will get the following warning, but it is based on an improper description of @RG in the BAM file, and the program is running well. Please download and use the new version of MicroSEC.R.
An example of warnings [W::finishrgpg] Tag PG:bwa-mem not found in @PG records.
- R
Published by MANO-B about 5 years ago
microsec - Version 1.2.4
Fixed an error when BAM file contained NAs.
- R
Published by MANO-B about 5 years ago
microsec - version 1.2.1
Error correction for deletion mutations.
- R
Published by MANO-B over 5 years ago
microsec - Version 1.2.0
MicroSEC is now running without a mutation supporting ID list nor neighborhood sequence data. Only a BAM file and mutation position data are necessary. It becomes very convenience.
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.18
Stable version. The next release will be v1.2.0.
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.17
thresholds modified based on clinical sequencing data
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.16
threshold for homologous region detection is modified
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.15
coverage depth detection method modified
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.14
mutation position detection method modified
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.13
Soft clip-based filtering deleted.
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.12
analysis is speed-up; it takes about a half time.
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.11
mutation position detection method modified
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.10
mutation position detection method modified
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.9
mutation position detection method modified
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.8
mutation position detection method modified for snv adjacent to indel mutations
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.7
Mutation position detection method modified.
- R
Published by MANO-B over 5 years ago
microsec - version 1.1.6
mutation position detection method modified
- R
Published by MANO-B over 5 years ago
microsec - Version 1.1.4
mutation position detection method modified
- R
Published by MANO-B over 5 years ago
microsec - Version 1.1.3
Hairpin structure detection method is improved.
- R
Published by MANO-B over 5 years ago
microsec - Version 1.1.0
Formatted for the CRAN repository.
- R
Published by MANO-B over 5 years ago
microsec - Version 1.0.10
This version do not overfilter mutations with co-mutations in neighbor. When a mutation is located at another mutation, minimum supporting lengths become too long.
- R
Published by MANO-B over 5 years ago
microsec - Version 1.0.8
Mutation information file conversion function was added.
- R
Published by MANO-B over 5 years ago