Recent Releases of tbea
tbea - New functionality for conflated distributions.
Added code for calculating quantiles on conflated distributions.
Corrected a couple bugs in documentation and non-standard assignment operators.
- R
Published by gaballench about 1 year ago
tbea - Added code for the truncated Cauchy
the function c_truncauchy allows to estimate this value for a fixed p in the truncated Cauchy distribution which is used by MCMCTree's L calibration density.
- R
Published by gaballench almost 2 years ago
tbea - Version 1.4.2 accepted on CRAN
From now on, the package can be installed using install.packages("tbea") for the stable version on CRAN, or using remotes::install_github("gaballench/tbea") for the development version.
- R
Published by gaballench about 2 years ago
tbea - Patch for `xintercept`
This minor release includes a patch for xintercept which needs to be applied. It also removes a dependency of this package which was making the installation process further install other (unnecessary) dependencies.
- R
Published by gaballench about 2 years ago
tbea - Methods for stratigraphic intervals now avaliable.
The function stratCI calculates confidence intervals (or brackets on the CI) using the methods by Strauss and Sadler (89) and Marshall (94). A number of bug fixes are also included. The function table2nexus helps to convert a delimited file to nexus format, which is especially useful for morphological matrices. Several improvements in documentation are also included.
- R
Published by gaballench about 2 years ago
tbea - New features for matrices and plotting
This release includes fixes to concatNext and the new table2nexus which reads data in plain-text value-delimited format (e.g., tsv, csv, tab) and returns the data in nexus format. It also includes the function crossplot which allows to compare pairs of densities (e.g. prior vs. posterior or independent runs of the same analysis) and plot the median and error bars representing the highest density interval, these around the identity line y = x.
- R
Published by gaballench about 2 years ago
tbea - Patch for summaryBrlen
A part in summaryBrlen had incorrectly hard-coded a tip which should be retrieved automatically for summarising branch lengths.
- R
Published by gaballench almost 3 years ago
tbea - Topological summary and density conflation now available
Added code for summarising trees (e.g. from the posterior of trees in a Bayesian analysis) and for calculating the conflation of arbitrary distributions.
- R
Published by gaballench about 3 years ago
tbea - New major version of tbea with breaking changes
The function fasta2nexus has been deprecated and its dependency network updated to remove apex. This change breaks code using tbea up to v5.2.0.
- R
Published by gaballench about 3 years ago
tbea - Includes code for calculating the x-intercept as a method for estimating the origin of a collection of divergence times
- R
Published by gaballench about 4 years ago
tbea - First release
Initial release with code previously in bayestools
- R
Published by gaballench almost 5 years ago