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data-management-resources

Repo supporting the manuscript 'Journeying towards best practice data management in biodiversity genomics'.

https://github.com/genomicsaotearoa/data-management-resources

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Committers with academic emails
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.7%) to scientific vocabulary

Keywords

care-principles data-management digital-sequence-information fair-principles genomics indigenous-data-sovereignty resources
Last synced: 4 months ago · JSON representation ·

Repository

Repo supporting the manuscript 'Journeying towards best practice data management in biodiversity genomics'.

Basic Info
Statistics
  • Stars: 3
  • Watchers: 7
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
care-principles data-management digital-sequence-information fair-principles genomics indigenous-data-sovereignty resources
Created almost 3 years ago · Last pushed about 2 years ago
Metadata Files
Readme License Citation

README.md

Genomic data management resources

This site contains resources that stand alongside the manuscript Journeying towards best practice data management in biodiversity genomics, now published in Molecular Ecology Resources.

This most recent version of the Hub content has been led by Jana Wold and Nat Forsdick, with support from manuscript co-authors Anton Angelo, François Bissey, Jamie Hart, Mitchell Head, Libby Liggins, Dinindu Senanayake, and Tammy Steeves.

Owner

  • Name: Genomics Aotearoa
  • Login: GenomicsAotearoa
  • Kind: organization
  • Email: genomics.aotearoa@otago.ac.nz
  • Location: New Zealand

See our GitHub pages (link below) for more information on our public repositories.

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: Biodiversity genomic data management
message: >-
  If you wish to cite this resource, please do so using the
  metadata provided here. 
preferred-citation:
  type: article
  title: "Journeying towards best practice: tips and tricks for improved data management for biodiversity genomics researchers"
  year: 2023
  authors:
    - given-names: Natalie Jane
      family-names: Forsdick
      email: forsdickn@landcareresearch.co.nz
      affiliation: Manaaki Whenua - Landcare Research
      orcid: 'https://orcid.org/0000-0003-0423-3314'
    - given-names: Jana R
      family-names: Wold
      email: jana.wold@canterbury.ac.nz
      affiliation: University of Canterbury
    - given-names: Anton
      family-names: Angelo
      affiliation: University of Canterbury
      email: anton.angelo@canterbury.ac.nz
    - given-names: François
      family-names: Bissey
      affiliation: University of Canterbury
      email: francois.bissey@canterbury.ac.nz
    - given-names: Jamie
      family-names: Hart
      affiliation: University of Canterbury
      email: jamie.hart@canterbury.ac.nz
    - given-names: Mitchell
      family-names: Head
      affiliation: University of Waikato
      email: mitchell.head@waikato.ac.nz
    - given-names: Libby
      family-names: Liggins
      affiliation: Massey University
      email: l.liggins@massey.ac.nz
    - given-names: Dinindu
      family-names: Senanayake
      affiliation: New Zealand eScience Infrastructure
      email: dinindu.senanayake@nesi.org.nz
    - given-names: Tammy E
      family-names: Steeves
      affiliation: University of Canterbury
      email: tammy.steeves@canterbury.ac.nz
  abstract: >-
    Large-scale genomic data sets are being generated at an
    unprecedented pace, requiring collaboration across
    disciplines to utilise these data to their full potential.
    We represent a cross-disciplinary team, including IT and
    eResearch support staff, biodiversity genomics
    researchers, and those interested in appropriate data
    stewardship and re-use. Through our experiences, we
    appreciate the need for appropriate data management
    practices not only to minimise the risks of data loss and
    maximise efficiency and productivity for single projects,
    but also to enhance opportunities for future data re-use
    and collaboration. These practices are an essential
    component in facilitating Indigenous data sovereignty and
    are an expectation of the FAIR and CARE principles. Here
    we model good data management practices, and provide tips
    and tricks to support emerging researchers (and research
    teams broadly) in documenting and managing biodiversity
    genomic data sets and associated metadata. We aim to
    empower the biodiversity genomics community to minimise
    risks and maximise research impact now and into the
    future.
  keywords:
    - genomic data management
    - biodiversity genomics
    - data management plans
  license: CC-BY-1.0

GitHub Events

Total
Last Year

Committers

Last synced: almost 2 years ago

All Time
  • Total Commits: 482
  • Total Committers: 5
  • Avg Commits per committer: 96.4
  • Development Distribution Score (DDS): 0.297
Past Year
  • Commits: 482
  • Committers: 5
  • Avg Commits per committer: 96.4
  • Development Distribution Score (DDS): 0.297
Top Committers
Name Email Commits
Natalie Forsdick 2****k 339
Nat Work n****k@g****m 114
Dinindu Senanayake d****n@g****m 22
JHart-UC 1****C 5
UC-ConSERT c****c@g****m 2

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Last synced: almost 2 years ago

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  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Dependencies

.github/workflows/ci.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite