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classyfirer

R Interface to the ClassyFire REST API

https://github.com/aberhrml/classyfirer

Science Score: 33.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    2 of 6 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.6%) to scientific vocabulary

Keywords

chemont classifiation cran database inchi-key metabolomics ontology
Last synced: 6 months ago · JSON representation

Repository

R Interface to the ClassyFire REST API

Basic Info
Statistics
  • Stars: 10
  • Watchers: 6
  • Forks: 10
  • Open Issues: 6
  • Releases: 0
Topics
chemont classifiation cran database inchi-key metabolomics ontology
Created about 8 years ago · Last pushed 12 months ago
Metadata Files
Readme

README.md

classyfireR

Lifecycle: stable R-CMD-check codecov License DOI

CRAN total downloads

GitHub

R Interface to the ClassyFire REST API

Installation

classyfireR can be installed from CRAN using;

R install.packages('classyfireR')

Or the latest development version can be installed form GitHub using the remotes package

R remotes::install_github('aberHRML/classyfireR', build_vignettes = TRUE')

Usage

The package documentation can be found at https://aberHRML.github.io/classyfireR or view the vignette for an introduction into the package.

Acknowledgements

If you use classyfireR you should cite the ClassyFire publication

Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS. ClassyFire: Automated Chemical Classification With A Comprehensive, Computable Taxonomy. Journal of Cheminformatics, 2016, 8:61.

DOI: 10.1186/s13321-016-0174-y

Owner

  • Name: aberHRML
  • Login: aberHRML
  • Kind: organization
  • Location: Aberystwyth University, UK

Aberystwyth High Resolution Metabolomics Laboratory

GitHub Events

Total
  • Issues event: 2
  • Watch event: 1
  • Issue comment event: 6
  • Push event: 1
  • Pull request event: 2
  • Fork event: 1
  • Create event: 1
Last Year
  • Issues event: 2
  • Watch event: 1
  • Issue comment event: 6
  • Push event: 1
  • Pull request event: 2
  • Fork event: 1
  • Create event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 307
  • Total Committers: 6
  • Avg Commits per committer: 51.167
  • Development Distribution Score (DDS): 0.091
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
wilsontom w****9@g****m 279
fschmidt f****t@i****e 13
jasenfinch j****9@a****k 9
gjgetzinger g****r@d****u 3
Flow191 7****1 2
Jan Stanstrup s****p@g****m 1
Committer Domains (Top 20 + Academic)
duke.edu: 1 aber.ac.uk: 1 ipb-halle.de: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 1
  • Total pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: 2 days
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 2.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: 2 days
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 2.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • laporenai (1)
  • ScottCoffin (1)
  • TrippLaP (1)
  • 17851414315 (1)
Pull Request Authors
  • drewszabo (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads: unknown
  • Total docker downloads: 25
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 9
cran.r-project.org: classyfireR

R Interface to the 'ClassyFire' REST API

  • Versions: 9
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 0
  • Docker Downloads: 25
Rankings
Forks count: 9.1%
Stargazers count: 18.7%
Dependent repos count: 25.5%
Dependent packages count: 29.8%
Average: 34.6%
Downloads: 89.7%
Last synced: 12 months ago

Dependencies

DESCRIPTION cran
  • magrittr * depends
  • RSQLite * imports
  • cli * imports
  • clisymbols * imports
  • crayon * imports
  • dplyr * imports
  • httr * imports
  • jsonlite * imports
  • methods * imports
  • purrr * imports
  • rjson * imports
  • stringr * imports
  • tibble * imports
  • tidyjson * imports
  • tidyr * imports
  • covr * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • stringi * suggests
  • testthat * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v2 composite
  • actions/upload-artifact main composite
  • r-lib/actions/check-r-package v1 composite
  • r-lib/actions/setup-pandoc v1 composite
  • r-lib/actions/setup-r v1 composite
  • r-lib/actions/setup-r-dependencies v1 composite
.github/workflows/test-coverage.yml actions
  • actions/cache v1 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc master composite
  • r-lib/actions/setup-r master composite