Recent Releases of hmde
hmde - CRAN release
Package accepted onto CRAN. This release brings the GitHub fully into line with the binaries published on CRAN.
What's Changed
- Spellchecks by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/71
- Spellcheck by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/72
Full Changelog: https://github.com/traitecoevo/hmde/compare/1.2...1.2.1
- HTML
Published by Tess-LaCoil 8 months ago
hmde - CRAN Upload
Release prepared for CRAN submission.
What's Changed
- Spellchecks by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/71
Full Changelog: https://github.com/traitecoevo/hmde/compare/1.2...1.2.1
- HTML
Published by Tess-LaCoil 8 months ago
hmde - Chapter-ready release
Final changes to structure and vignettes as a result of going through everything to write the first draft of the package paper.
Structural changes:
- Removed the specific prior for ind_y_0 as that was double-counting the first observation in the likelihood. The parameter ind_y_0 is still estimated in the data, but does not get a direct prior and instead has its prior constructed through the y_hat vector as do the other sizes.
- Removed y_0_obs as passed data because it isn't used in the model once the prior for ind_y_0 was removed.
- Data assignment, data generation, and testing code had to be re-worked to account for the removal of y_0_obs.
- Added a function to plot sizes over time as well as the DE plot function.
Vignette changes: - Added the Here Be Dragons vignette that investigates an interaction between errors in numerical methods in the longitudinal model and the MCMC sampling. - Re-worded and re-structured other vignettes to take advantage of the new size over time function. - Included a set of posterior estimates for the Canham demo because running the fit takes a few hours.
What's Changed
- Maths vignette by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/44
- Vignette fonti by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/46
- Here be dragons by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/45
- Added a function to plot sizes over time in parallel with the DE plot… by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/48
- Paper writing by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/50
Full Changelog: https://github.com/traitecoevo/hmde/compare/1.0...1.1
- HTML
Published by Tess-LaCoil about 1 year ago
hmde - Full release.
Release version with initial set of vignettes set up and ready for ESA.
- HTML
Published by Tess-LaCoil about 1 year ago
hmde - New name, new models
Added new models: power law, von Bertalanffy, and a linear DE with more direct parameterisation and wider priors than the vB model.
Also changed the name from rmot to hmde - hierarchical methods for differential equations.
What's Changed
- Power model add by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/13
- Update readme by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/16
- Vb model add by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/18
- Add datasets by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/19
- Revert "Vb model add" by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/20
- Ignore generate c/cpp files by @dfalster in https://github.com/traitecoevo/hmde/pull/22
- Reduce testing os by @dfalster in https://github.com/traitecoevo/hmde/pull/23
- Vb model add by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/25
- Added linear DE by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/26
- Name change by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/27
- Changed capitalisation for some files. by @Tess-LaCoil in https://github.com/traitecoevo/hmde/pull/28
New Contributors
- @dfalster made their first contribution in https://github.com/traitecoevo/hmde/pull/22
Full Changelog: https://github.com/traitecoevo/hmde/compare/0.0.0.920...0.1.0
- HTML
Published by Tess-LaCoil over 1 year ago
hmde - Stan template
Basic structure for simple Stan R package
- HTML
Published by fontikar about 2 years ago