SpeciesDistributionToolkit.jl - SDeMo-v1.5.2

SDeMo SDeMo-v1.5.2

Diff since SDeMo-v1.5.1

Merged pull requests: - Adding CRS to construct polygons (#500) (@gottacatchenall) - Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran) - Update to make decision stubs actually work (#502) (@tpoisot)

Closed issues: - Clipped polygons cannot be used to mask layers (#499)

- Julia
Published by github-actions[bot] 9 months ago

SpeciesDistributionToolkit.jl - GBIF-v1.1.1

GBIF GBIF-v1.1.1

Diff since GBIF-v1.1.0

Merged pull requests: - Add bioregions from OneEarth (#448) (@tpoisot) - Add bibliography to the documentation (#450) (@tpoisot) - Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17) - OneEarth CSV Path Fix (#453) (@gottacatchenall) - SimpleSDMPolygons docs + tests (#454) (@tpoisot) - Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot]) - Variable selection checkpointing issue fixed (#459) (@tpoisot) - Iteration over occurrences (#461) (@tpoisot) - Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot) - Change plotting package for polygons to Makie (#467) (@tpoisot) - Update plotting extension to Makie for Phylopic (#468) (@tpoisot) - Doc updates pre CSEE workshop (#473) (@tpoisot) - Fix masking of occurrences by feature collections (#478) (@tpoisot) - Bug fixes for SimpleSDMPolygons (#482) (@tpoisot) - Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot) - Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot) - Experiments with AdaBoost (#488) (@tpoisot) - Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall) - Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot) - Add Phylopic dep for 0.24 (#492) (@tpoisot) - Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall) - boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall) - Training and thresholding improvements for SDeMo (#498) (@tpoisot) - Adding CRS to construct polygons (#500) (@gottacatchenall) - Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran)

Closed issues: - MLJ integration (#83) - Use the resolve endpoint to match GBIF (#181) - OneEarth ecoregions (#442) - Indexing Polygons based on properties (#449) - Can't tag new SimpleSDMPolygons release (#452) - Support iteration for AbstractOccurrences (#460) - Cannot mask occurrences by a feature collection (#476) - Masking a layer with a FeatureCollection is not working (#477) - Bugfixes for polygons (#479) - Resolv should be Resolve (fix + alias for compatibility) (#480) - EPA polygons (I think I know why) are not working (#481) - Cleanup the reference section of the package (#484) - EPA polygons are on the side (#485) - First polygon plotted by Makie has the wrong attributes (#486) - No boundinngbox method for multipolygons (#494) - Improvements to model thresholding (#497) - Clipped polygons cannot be used to mask layers (#499)

- Julia
Published by github-actions[bot] 9 months ago

SpeciesDistributionToolkit.jl - SimpleSDMPolygons-v1.2.2

SimpleSDMPolygons SimpleSDMPolygons-v1.2.2

Diff since SimpleSDMPolygons-v1.2.1

Merged pull requests: - Training and thresholding improvements for SDeMo (#498) (@tpoisot) - Adding CRS to construct polygons (#500) (@gottacatchenall)

Closed issues: - Clipped polygons cannot be used to mask layers (#499)

- Julia
Published by github-actions[bot] 9 months ago

SpeciesDistributionToolkit.jl - SDeMo-v1.5.1

SDeMo SDeMo-v1.5.1

Diff since SDeMo-v1.5.0

Merged pull requests: - Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall) - Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot) - Add Phylopic dep for 0.24 (#492) (@tpoisot) - Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall) - boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall) - Training and thresholding improvements for SDeMo (#498) (@tpoisot)

Closed issues: - No boundinngbox method for multipolygons (#494) - Improvements to model thresholding (#497)

- Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit.jl - SimpleSDMPolygons-v1.2.1

SimpleSDMPolygons SimpleSDMPolygons-v1.2.1

Diff since SimpleSDMPolygons-v1.2.0

Merged pull requests: - Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot) - Add Phylopic dep for 0.24 (#492) (@tpoisot) - Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall) - boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall)

Closed issues: - No boundinngbox method for multipolygons (#494) - Improvements to model thresholding (#497)

- Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit.jl - v1.7.1

SpeciesDistributionToolkit v1.7.1

Diff since v1.7.0

Merged pull requests: - Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall) - Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot) - Add Phylopic dep for 0.24 (#492) (@tpoisot) - boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall)

- Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.3.2

SimpleSDMLayers SimpleSDMLayers-v1.3.2

Diff since SimpleSDMLayers-v1.3.1

Merged pull requests: - Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot) - Change plotting package for polygons to Makie (#467) (@tpoisot) - Update plotting extension to Makie for Phylopic (#468) (@tpoisot) - Doc updates pre CSEE workshop (#473) (@tpoisot) - Fix masking of occurrences by feature collections (#478) (@tpoisot) - Bug fixes for SimpleSDMPolygons (#482) (@tpoisot) - Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot) - Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot) - Experiments with AdaBoost (#488) (@tpoisot) - Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall) - Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot) - Add Phylopic dep for 0.24 (#492) (@tpoisot)

Closed issues: - Cannot mask occurrences by a feature collection (#476) - Masking a layer with a FeatureCollection is not working (#477) - Bugfixes for polygons (#479) - Resolv should be Resolve (fix + alias for compatibility) (#480) - EPA polygons (I think I know why) are not working (#481) - Cleanup the reference section of the package (#484) - EPA polygons are on the side (#485) - First polygon plotted by Makie has the wrong attributes (#486)

- Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit.jl - Phylopic-v1.0.2

Phylopic Phylopic-v1.0.2

Diff since Phylopic-v1.0.1

Merged pull requests: - Doc updates pre CSEE workshop (#473) (@tpoisot) - Fix masking of occurrences by feature collections (#478) (@tpoisot) - Bug fixes for SimpleSDMPolygons (#482) (@tpoisot) - Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot) - Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot) - Experiments with AdaBoost (#488) (@tpoisot) - Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall) - Add Phylopic dep for 0.24 (#492) (@tpoisot)

Closed issues: - Cannot mask occurrences by a feature collection (#476) - Masking a layer with a FeatureCollection is not working (#477) - Bugfixes for polygons (#479) - Resolv should be Resolve (fix + alias for compatibility) (#480) - EPA polygons (I think I know why) are not working (#481) - Cleanup the reference section of the package (#484) - EPA polygons are on the side (#485) - First polygon plotted by Makie has the wrong attributes (#486)

- Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit.jl - SimpleSDMPolygons-v1.2.0

SimpleSDMPolygons SimpleSDMPolygons-v1.2.0

Diff since SimpleSDMPolygons-v1.1.4

Merged pull requests: - Doc updates pre CSEE workshop (#473) (@tpoisot) - Experiments with AdaBoost (#488) (@tpoisot) - Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall)

- Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit.jl - v1.7.0

SpeciesDistributionToolkit v1.7.0

Diff since v1.6.3

Merged pull requests: - Doc updates pre CSEE workshop (#473) (@tpoisot) - Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot) - Experiments with AdaBoost (#488) (@tpoisot)

Closed issues: - EPA polygons are on the side (#485) - First polygon plotted by Makie has the wrong attributes (#486)

- Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit.jl - SDeMo-v1.5.0

SDeMo SDeMo-v1.5.0

Diff since SDeMo-v1.4.1

Merged pull requests: - Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot]) - Iteration over occurrences (#461) (@tpoisot) - Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot) - Change plotting package for polygons to Makie (#467) (@tpoisot) - Update plotting extension to Makie for Phylopic (#468) (@tpoisot) - Doc updates pre CSEE workshop (#473) (@tpoisot) - Fix masking of occurrences by feature collections (#478) (@tpoisot) - Bug fixes for SimpleSDMPolygons (#482) (@tpoisot) - Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot) - Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot) - Experiments with AdaBoost (#488) (@tpoisot)

Closed issues: - MLJ integration (#83) - Support iteration for AbstractOccurrences (#460) - Cannot mask occurrences by a feature collection (#476) - Masking a layer with a FeatureCollection is not working (#477) - Bugfixes for polygons (#479) - Resolv should be Resolve (fix + alias for compatibility) (#480) - EPA polygons (I think I know why) are not working (#481) - Cleanup the reference section of the package (#484) - EPA polygons are on the side (#485) - First polygon plotted by Makie has the wrong attributes (#486)

- Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit.jl - SimpleSDMPolygons-v1.1.4

SimpleSDMPolygons SimpleSDMPolygons-v1.1.4

Diff since SimpleSDMPolygons-v1.1.3

Merged pull requests: - Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot) - Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot)

Closed issues: - Masking a layer with a FeatureCollection is not working (#477) - Cleanup the reference section of the package (#484) - EPA polygons are on the side (#485) - First polygon plotted by Makie has the wrong attributes (#486)

- Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit.jl - v1.6.3

SpeciesDistributionToolkit v1.6.3

Diff since v1.6.2

Merged pull requests: - Bug fixes for SimpleSDMPolygons (#482) (@tpoisot) - Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot)

Closed issues: - Masking a layer with a FeatureCollection is not working (#477) - Bugfixes for polygons (#479) - Resolv should be Resolve (fix + alias for compatibility) (#480) - EPA polygons (I think I know why) are not working (#481)

- Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit.jl - SimpleSDMPolygons-v1.1.3

SimpleSDMPolygons SimpleSDMPolygons-v1.1.3

Diff since SimpleSDMPolygons-v1.1.2

Merged pull requests: - Update plotting extension to Makie for Phylopic (#468) (@tpoisot) - Fix masking of occurrences by feature collections (#478) (@tpoisot) - Bug fixes for SimpleSDMPolygons (#482) (@tpoisot)

Closed issues: - Cannot mask occurrences by a feature collection (#476) - Bugfixes for polygons (#479) - Resolv should be Resolve (fix + alias for compatibility) (#480) - EPA polygons (I think I know why) are not working (#481)

- Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit.jl - v1.6.2

SpeciesDistributionToolkit v1.6.2

Diff since v1.6.1

Merged pull requests: - Download API for GBIF (#323) (@tpoisot) - Fix various occint bugs (#447) (@tpoisot) - Add bioregions from OneEarth (#448) (@tpoisot) - Add bibliography to the documentation (#450) (@tpoisot) - Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17) - OneEarth CSV Path Fix (#453) (@gottacatchenall) - SimpleSDMPolygons docs + tests (#454) (@tpoisot) - Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot]) - Variable selection checkpointing issue fixed (#459) (@tpoisot) - Iteration over occurrences (#461) (@tpoisot) - Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot) - Change plotting package for polygons to Makie (#467) (@tpoisot) - Update plotting extension to Makie for Phylopic (#468) (@tpoisot) - Fix masking of occurrences by feature collections (#478) (@tpoisot)

Closed issues: - MLJ integration (#83) - Use the resolve endpoint to match GBIF (#181) - Download API for GBIF (#308) - Add a reclassify function (#407) - Cellsize was useful... (#416) - Documentation update for OccurrencesInterface (#426) - Some demo occurrences in OccurrencesInterface are wrong (#432) - OneEarth ecoregions (#442) - Indexing Polygons based on properties (#449) - Can't tag new SimpleSDMPolygons release (#452) - Support iteration for AbstractOccurrences (#460) - Cannot mask occurrences by a feature collection (#476)

- Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit.jl - Phylopic-v1.0.1

Phylopic Phylopic-v1.0.1

Diff since Phylopic-v1.0.0

Merged pull requests: - Download API for GBIF (#323) (@tpoisot) - Release SDT post Phylopic 1 (#444) (@tpoisot) - Fix various occint bugs (#447) (@tpoisot) - Add bioregions from OneEarth (#448) (@tpoisot) - Add bibliography to the documentation (#450) (@tpoisot) - Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17) - OneEarth CSV Path Fix (#453) (@gottacatchenall) - SimpleSDMPolygons docs + tests (#454) (@tpoisot) - Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot]) - Variable selection checkpointing issue fixed (#459) (@tpoisot) - Iteration over occurrences (#461) (@tpoisot) - Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot) - Change plotting package for polygons to Makie (#467) (@tpoisot) - Update plotting extension to Makie for Phylopic (#468) (@tpoisot)

Closed issues: - MLJ integration (#83) - Use the resolve endpoint to match GBIF (#181) - Download API for GBIF (#308) - Add a reclassify function (#407) - Cellsize was useful... (#416) - Documentation update for OccurrencesInterface (#426) - Some demo occurrences in OccurrencesInterface are wrong (#432) - OneEarth ecoregions (#442) - Indexing Polygons based on properties (#449) - Can't tag new SimpleSDMPolygons release (#452) - Support iteration for AbstractOccurrences (#460)

- Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit.jl - OccurrencesInterface-v1.2.1

OccurrencesInterface OccurrencesInterface-v1.2.1

Diff since OccurrencesInterface-v1.2.0

Merged pull requests: - Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot]) - Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot) - Change plotting package for polygons to Makie (#467) (@tpoisot)

- Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit.jl - SimpleSDMPolygons-v1.1.2

SimpleSDMPolygons SimpleSDMPolygons-v1.1.2

Diff since SimpleSDMPolygons-v1.1.1

Merged pull requests: - Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot]) - Variable selection checkpointing issue fixed (#459) (@tpoisot) - Iteration over occurrences (#461) (@tpoisot) - Change plotting package for polygons to Makie (#467) (@tpoisot)

Closed issues: - MLJ integration (#83) - Use the resolve endpoint to match GBIF (#181) - Support iteration for AbstractOccurrences (#460)

- Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.3.1

SimpleSDMLayers SimpleSDMLayers-v1.3.1

Diff since SimpleSDMLayers-v1.3.0

Merged pull requests: - Download API for GBIF (#323) (@tpoisot) - Add bioregions from OneEarth (#448) (@tpoisot) - Add bibliography to the documentation (#450) (@tpoisot) - Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17) - OneEarth CSV Path Fix (#453) (@gottacatchenall) - SimpleSDMPolygons docs + tests (#454) (@tpoisot) - Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot]) - Variable selection checkpointing issue fixed (#459) (@tpoisot) - Iteration over occurrences (#461) (@tpoisot)

Closed issues: - MLJ integration (#83) - Use the resolve endpoint to match GBIF (#181) - Download API for GBIF (#308) - OneEarth ecoregions (#442) - Indexing Polygons based on properties (#449) - Can't tag new SimpleSDMPolygons release (#452) - Support iteration for AbstractOccurrences (#460)

- Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit.jl - OccurrencesInterface-v1.2.0

OccurrencesInterface OccurrencesInterface-v1.2.0

Diff since OccurrencesInterface-v1.1.1

Merged pull requests: - Download API for GBIF (#323) (@tpoisot) - Add bioregions from OneEarth (#448) (@tpoisot) - Add bibliography to the documentation (#450) (@tpoisot) - Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17) - OneEarth CSV Path Fix (#453) (@gottacatchenall) - SimpleSDMPolygons docs + tests (#454) (@tpoisot) - Variable selection checkpointing issue fixed (#459) (@tpoisot) - Iteration over occurrences (#461) (@tpoisot)

Closed issues: - MLJ integration (#83) - Use the resolve endpoint to match GBIF (#181) - Download API for GBIF (#308) - Add a reclassify function (#407) - Cellsize was useful... (#416) - OneEarth ecoregions (#442) - Indexing Polygons based on properties (#449) - Can't tag new SimpleSDMPolygons release (#452) - Support iteration for AbstractOccurrences (#460)

- Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit.jl - SDeMo-v1.4.1

SDeMo SDeMo-v1.4.1

Diff since SDeMo-v1.4.0

Merged pull requests: - Download API for GBIF (#323) (@tpoisot) - SDT new version with pseudo absences (#413) (@tpoisot) - Bug in sampling from Bool layers (#415) (@tpoisot) - SimpleSDMPolygons (#417) (@gottacatchenall) - Load and save occurrences from JSON files (#421) (@tpoisot) - Default data and plotting for OccInt (#423) (@tpoisot) - Remove occurrences plotting from SDT (#424) (@tpoisot) - Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot) - semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall) - Makie for layers (#428) (@tpoisot) - SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot) - SDMPolygons Makie.lines (#434) (@gottacatchenall) - Phylopic v1 (#435) (@tpoisot) - Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall) - GADM URL Typo (#440) (@gottacatchenall) - SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall) - Release SDT post Phylopic 1 (#444) (@tpoisot) - Fix various occint bugs (#447) (@tpoisot) - Add bioregions from OneEarth (#448) (@tpoisot) - Add bibliography to the documentation (#450) (@tpoisot) - Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17) - OneEarth CSV Path Fix (#453) (@gottacatchenall) - SimpleSDMPolygons docs + tests (#454) (@tpoisot) - Variable selection checkpointing issue fixed (#459) (@tpoisot)

Closed issues: - Ecoregions (#49) - Download API for GBIF (#308) - Add a reclassify function (#407) - New version using PseudoAbsences (#411) - Sampling from Boolean layers is wrong (#414) - Cellsize was useful... (#416) - Move plotting function in SimpleSDMLayers (#422) - Documentation update for OccurrencesInterface (#426) - Phylopic v1 when? (#430) - Add methods to do lines in addition to poly (#431) - Some demo occurrences in OccurrencesInterface are wrong (#432) - Boundingbox for SimpleSDMPolygons (#433) - Typo in GADM url in SDMPolygons (#438) - OneEarth ecoregions (#442) - Indexing Polygons based on properties (#449) - Can't tag new SimpleSDMPolygons release (#452)

- Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit.jl - SimpleSDMPolygons-v1.1.1

SimpleSDMPolygons SimpleSDMPolygons-v1.1.1

Diff since SimpleSDMPolygons-v1.1.0

Merged pull requests: - SimpleSDMPolygons docs + tests (#454) (@tpoisot)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMPolygons-v1.1.0

SimpleSDMPolygons SimpleSDMPolygons-v1.1.0

Diff since SimpleSDMPolygons-v1.0.5

Merged pull requests: - Add bioregions from OneEarth (#448) (@tpoisot) - OneEarth CSV Path Fix (#453) (@gottacatchenall)

Closed issues: - OneEarth ecoregions (#442) - Indexing Polygons based on properties (#449) - Can't tag new SimpleSDMPolygons release (#452)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMPolygons-v1.0.5

SimpleSDMPolygons SimpleSDMPolygons-v1.0.5

Diff since SimpleSDMPolygons-v1.0.4

Merged pull requests: - Download API for GBIF (#323) (@tpoisot) - Phylopic v1 (#435) (@tpoisot) - Release SDT post Phylopic 1 (#444) (@tpoisot) - Fix various occint bugs (#447) (@tpoisot) - Add bibliography to the documentation (#450) (@tpoisot) - Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17)

Closed issues: - Download API for GBIF (#308) - Add a reclassify function (#407) - Cellsize was useful... (#416) - Documentation update for OccurrencesInterface (#426) - Phylopic v1 when? (#430) - Add methods to do lines in addition to poly (#431) - Some demo occurrences in OccurrencesInterface are wrong (#432) - Boundingbox for SimpleSDMPolygons (#433)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - GBIF-v1.1.0

GBIF GBIF-v1.1.0

Diff since GBIF-v1.0.2

Merged pull requests: - Download API for GBIF (#323) (@tpoisot) - Remove occurrences plotting from SDT (#424) (@tpoisot) - semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall) - Makie for layers (#428) (@tpoisot) - SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot) - SDMPolygons Makie.lines (#434) (@gottacatchenall) - Phylopic v1 (#435) (@tpoisot) - Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall) - GADM URL Typo (#440) (@gottacatchenall) - SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall) - Release SDT post Phylopic 1 (#444) (@tpoisot) - Fix various occint bugs (#447) (@tpoisot)

Closed issues: - Download API for GBIF (#308) - Add a reclassify function (#407) - Cellsize was useful... (#416) - Move plotting function in SimpleSDMLayers (#422) - Documentation update for OccurrencesInterface (#426) - Phylopic v1 when? (#430) - Add methods to do lines in addition to poly (#431) - Some demo occurrences in OccurrencesInterface are wrong (#432) - Boundingbox for SimpleSDMPolygons (#433) - Typo in GADM url in SDMPolygons (#438)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.3.0

SimpleSDMLayers SimpleSDMLayers-v1.3.0

Diff since SimpleSDMLayers-v1.2.2

Merged pull requests: - Remove occurrences plotting from SDT (#424) (@tpoisot) - semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall) - SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot) - SDMPolygons Makie.lines (#434) (@gottacatchenall) - Phylopic v1 (#435) (@tpoisot) - Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall) - GADM URL Typo (#440) (@gottacatchenall) - SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall) - Release SDT post Phylopic 1 (#444) (@tpoisot) - Fix various occint bugs (#447) (@tpoisot)

Closed issues: - Move plotting function in SimpleSDMLayers (#422) - Documentation update for OccurrencesInterface (#426) - Phylopic v1 when? (#430) - Add methods to do lines in addition to poly (#431) - Some demo occurrences in OccurrencesInterface are wrong (#432) - Boundingbox for SimpleSDMPolygons (#433) - Typo in GADM url in SDMPolygons (#438)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - OccurrencesInterface-v1.1.1

OccurrencesInterface OccurrencesInterface-v1.1.1

Diff since OccurrencesInterface-v1.1.0

Merged pull requests: - Remove occurrences plotting from SDT (#424) (@tpoisot) - Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot) - semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall) - Makie for layers (#428) (@tpoisot) - SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot) - SDMPolygons Makie.lines (#434) (@gottacatchenall) - Phylopic v1 (#435) (@tpoisot) - Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall) - GADM URL Typo (#440) (@gottacatchenall) - SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall) - Release SDT post Phylopic 1 (#444) (@tpoisot) - Fix various occint bugs (#447) (@tpoisot)

Closed issues: - Move plotting function in SimpleSDMLayers (#422) - Documentation update for OccurrencesInterface (#426) - Phylopic v1 when? (#430) - Add methods to do lines in addition to poly (#431) - Some demo occurrences in OccurrencesInterface are wrong (#432) - Boundingbox for SimpleSDMPolygons (#433) - Typo in GADM url in SDMPolygons (#438)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.6.1

SpeciesDistributionToolkit v1.6.1

Diff since v1.6.0

Merged pull requests: - Phylopic v1 (#435) (@tpoisot) - Release SDT post Phylopic 1 (#444) (@tpoisot)

Closed issues: - Phylopic v1 when? (#430) - Add methods to do lines in addition to poly (#431) - Boundingbox for SimpleSDMPolygons (#433)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - Phylopic-v1.0.0

Phylopic Phylopic-v1.0.0

Diff since Phylopic-v0.0.5

First stable release, there are no breaking changes

Merged pull requests: - Use CRS for SimpleSDMLayers (#227) (@tpoisot) - CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#229) (@github-actions[bot]) - Fauxcurrences v0.2.0 (#232) (@tpoisot) - SimpleSDMDatasets v0.2.0 (#233) (@tpoisot) - SimpleSDMLayers v1.0.0 (#234) (@tpoisot) - Update TagBot.yml (#246) (@tpoisot) - Update README.md (#247) (@tpoisot) - CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot]) - Github actions for documentation (#249) (@tpoisot) - semver(datasets): v0.2.1 (#250) (@tpoisot) - VitePress for the top level doc site (#251) (@tpoisot) - Cleanup tutorial + howto (#253) (@tpoisot) - Future climate tutorial update (#255) (@tpoisot) - Restore fauxcurrence page (#256) (@tpoisot) - Simplify the navbar (#257) (@tpoisot) - Add interpolate! (#260) (@tpoisot) - Add a tutorial on building the BIOCLIM model (#261) (@tpoisot) - Bug fix: source argument missing from interpolate (#262) (@tpoisot) - Add support to mask/reveal/hide by polygons (#263) (@tpoisot) - CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot]) - Additional fields to the dataset interface (#265) (@tpoisot) - Mosaic with polygons (#266) (@tpoisot) - New interpolate method (#268) (@tpoisot) - Bounding box when reading is now in WGS84 (#271) (@tpoisot) - SDeMo (#272) (@tpoisot) - Prepare main package for SDeMo interop (#273) (@tpoisot) - chore: prep for tag (#274) (@tpoisot) - Update CompatHelper.yml (#275) (@tpoisot) - Create README.md (#276) (@tpoisot) - removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall) - SDeMo update (#282) (@tpoisot) - CHELSA url changed? (#283) (@tpoisot) - SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot) - semver(sdt): v0.1.3 (#286) (@tpoisot) - SDeMo QoL improvements (#289) (@tpoisot) - feat(demo): ensemble counterfactuals (#292) (@tpoisot) - OccurrencesInterface package (#294) (@tpoisot) - Links to all doc websites on PR (#299) (@tpoisot) - chore(occ): LICENSE (#304) (@tpoisot) - Doc improvements for the top-level package (#305) (@tpoisot) - SDeMo bugfix and QOL (#306) (@tpoisot) - Bring VIF back (#307) (@tpoisot) - SDeMo v1.0.0 (#309) (@tpoisot) - Fauxcurrence v1.0.0 (#315) (@tpoisot) - GBIF v1.0.0 (#317) (@tpoisot) - SDT v1.0.0 (#320) (@tpoisot) - Add SDeMo compat (#321) (@tpoisot) - Fix remaining compat entries (#322) (@tpoisot) - Add boundingbox function (#326) (@tpoisot) - GBIF v1.0.1 (#330) (@tpoisot) - Update Project.toml (#331) (@tpoisot) - Improve access to GADM (#333) (@tpoisot) - SDeMo - selection and stratification (#334) (@tpoisot) - Copernicus land cover data (#335) (@tpoisot) - Release SDT to track new data version (#339) (@tpoisot) - Update CHANGELOG.md (#340) (@tpoisot) - Make decision tree faster / more efficient (#341) (@tpoisot) - Masking vectors of layers (#343) (@gottacatchenall) - Performance improvements in SDeMo (#344) (@tpoisot) - mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall) - Export interpolate! (#348) (@tpoisot) - Balanced bootstrap in SDeMo (#349) (@tpoisot) - Add logistic regression to SDeMo (#350) (@tpoisot) - semver(sdt): v0.1.3 (#351) (@tpoisot) - Additional options for logistic regression (#352) (@tpoisot) - Fixed show method (#353) (@tpoisot) - Add support for Clustering (#354) (@tpoisot) - Add SpatialBoundaries support through an extension (#355) (@tpoisot) - Safe threading in SDeMo (#359) (@tpoisot) - Clustering quality (#360) (@tpoisot) - DistanceToEvent performance (#361) (@tpoisot) - Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot) - QoL improvements for SDeMo (#367) (@tpoisot) - Add support for NeutralLandscapes (#369) (@tpoisot) - Fix variable selection verbose output (#373) (@tpoisot) - Support for the STAC package through an extension (#374) (@tpoisot) - Shapley on novel data (#376) (@tpoisot) - Use ZipArchives to get GADM data (#378) (@tpoisot) - Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot) - Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot) - Layers cleanup - coarsen + mvstats (#386) (@tpoisot) - Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall) - Fix the zip file issue (#390) (@tpoisot) - SimpleSDMLayers v1.2.1 (#391) (@tpoisot) - SDeMo various fixes (#393) (@tpoisot) - Improve polygon masking/simplification (#396) (@tpoisot) - Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot) - Make logistic regression more memory efficient (#399) (@tpoisot) - Automatically link to issues from the changelog (#403) (@tpoisot) - PseudoAbsences.jl (#404) (@tpoisot) - Variable selection improvements (#410) (@tpoisot) - SDT new version with pseudo absences (#413) (@tpoisot) - Bug in sampling from Bool layers (#415) (@tpoisot) - SimpleSDMPolygons (#417) (@gottacatchenall) - Load and save occurrences from JSON files (#421) (@tpoisot) - Default data and plotting for OccInt (#423) (@tpoisot) - Remove occurrences plotting from SDT (#424) (@tpoisot) - Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot) - semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall) - Makie for layers (#428) (@tpoisot) - SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot) - SDMPolygons Makie.lines (#434) (@gottacatchenall) - Phylopic v1 (#435) (@tpoisot) - Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall) - GADM URL Typo (#440) (@gottacatchenall) - SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall)

Closed issues: - ecoClimate - Climatic layers from PMIP3 CMIP5 (#33) - Ecoregions (#49) - Wrap MultivariateStats (#203) - DuckDB (#205) - Move test to @testitem (#211) - Move vignettes out of the documentation? (#213) - LUH² (#217) - PaleoClim (#228) - STAC (#230) - Masking/segmentating layer based on vector (#231) - Move documentation to VitePress (#245) - Restore the Fauxcurrences tutorial (#252) - Update the tutorial for future climate data (#254) - Additional method to interpolate when we already have the destination layer (#258) - Add fields to the SimpleSDMDatasets interface (#259) - interpolate layer to same CRS/size as target layer (#267) - zeros/ones for layers is buggy - is it maintaining everything??? (#269) - The bounding box should be converted from WGS84 to the layer CRS (#270) - The fscore formula is wrong (#278) - Dispatch for Ensemble prediction is ambiguous (#279) - Define abstract types for Bagging and Ensemble (#280) - Add pop!, push!, etc to Ensemble (#281) - New versions (note to self) (#285) - SDeMo chokes on some decision trees when a single node is involved (#287) - Add maxdepth to decision trees (#288) - add a dispatch to the ConfusionMatrix functions (#290) - cannot cross-validate when using the consensus argument (#293) - data providers are flaky (#295) - Update gameplan (#296) - Add a "cookbook" section to the manual (#297) - Update the PR comment issue (#298) - Add a benchmark that runs on PRs (#300) - Tag GBIF v1.0.0 (#301) - Tag Fauxcurrences v1.0.0 (#302) - Tag SpeciesDistributionToolkit v1.0.0 (#303) - Copernicus fractional layers (#324) - Generic function to get a bounding box in WGS84 from an arbitrary object (#325) - Add link to the documentation (#327) - calling a performance measure on a tuple should give a nice output (#328) - GBIF needs patch release (#329) - boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336) - Memory leak in variable selection? (#337) - Potential performance improvement for masking a vector of polygons (#342) - coarsen is gone (#347) - Add support for clustering quality (#356) - Update the clustering interface to work on a vector of layers (#357) - Likely erroneous use of Threads.nthreads and Threads.threadid (#358) - Add a method to save a model with logistic classifier (#363) - Improve output for logistic models (#364) - Use the data not part of training to measure valid. loss on Logistic (#365) - Improve the verbose output of variable selection (#366) - Support for NeutralLandscapes (#368) - SDeMo doesn't load some hyper-parameters (#371) - Number of variables reported during variable selection is wrong (#372) - Shapley values on a layer may not work when using a different layer than was used for training (#375) - GADM weirdness (#377) - Use ZipArchives for raster data too (#379) - The UC Davis toaster / server situation (#380) - Add support for NaturalEarth polygons (#381) - Work through documentation to remove all WorldClim and GADM calls (#382) - Use nominatim API to get geojson directly (#385) - Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387) - Bug when reading zip files from SimpleSDMDatasets (#389) - _mcsample is too restrictive about types (#392) - PolygonOps requires that the first and last points are the same (#394) - Mask for polygons should be threaded (#395) - Tweaks to the polygon masking vignette (#398) - Variable selection accidentally resets the model (#400) - Add issue reference in the changelogs (#401) - Split pseudo absences code (#402) - Add variable selection for bagging models (#405) - Add variable selection for ensemble models (#406) - Logistic regression should de-mean the data (#408) - New version using PseudoAbsences (#411) - Sampling from Boolean layers is wrong (#414) - Move plotting function in SimpleSDMLayers (#422) - Phylopic v1 when? (#430) - Typo in GADM url in SDMPolygons (#438)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMPolygons-v1.0.4

SimpleSDMPolygons SimpleSDMPolygons-v1.0.4

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMPolygons-v1.0.3

SimpleSDMPolygons SimpleSDMPolygons-v1.0.3

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.6.0

SpeciesDistributionToolkit v1.6.0

Diff since v1.5.1

Merged pull requests: - semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall) - SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot) - SDMPolygons Makie.lines (#434) (@gottacatchenall) - Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall) - GADM URL Typo (#440) (@gottacatchenall) - SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall)

Closed issues: - Typo in GADM url in SDMPolygons (#438)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.5.1

SpeciesDistributionToolkit v1.5.1

Diff since v1.5.0

Merged pull requests: - SimpleSDMPolygons (#417) (@gottacatchenall) - Load and save occurrences from JSON files (#421) (@tpoisot) - Default data and plotting for OccInt (#423) (@tpoisot) - Remove occurrences plotting from SDT (#424) (@tpoisot) - Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot) - Makie for layers (#428) (@tpoisot)

Closed issues: - Ecoregions (#49) - Move plotting function in SimpleSDMLayers (#422)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.2.2

SimpleSDMLayers SimpleSDMLayers-v1.2.2

Diff since SimpleSDMLayers-v1.2.1

Merged pull requests: - SDeMo various fixes (#393) (@tpoisot) - Improve polygon masking/simplification (#396) (@tpoisot) - Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot) - Make logistic regression more memory efficient (#399) (@tpoisot) - Automatically link to issues from the changelog (#403) (@tpoisot) - PseudoAbsences.jl (#404) (@tpoisot) - Variable selection improvements (#410) (@tpoisot) - SDT new version with pseudo absences (#413) (@tpoisot) - Bug in sampling from Bool layers (#415) (@tpoisot) - SimpleSDMPolygons (#417) (@gottacatchenall) - Load and save occurrences from JSON files (#421) (@tpoisot) - Default data and plotting for OccInt (#423) (@tpoisot) - Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot) - Makie for layers (#428) (@tpoisot)

Closed issues: - Ecoregions (#49) - Add a benchmark that runs on PRs (#300) - SDeMo doesn't load some hyper-parameters (#371) - _mcsample is too restrictive about types (#392) - PolygonOps requires that the first and last points are the same (#394) - Mask for polygons should be threaded (#395) - Tweaks to the polygon masking vignette (#398) - Variable selection accidentally resets the model (#400) - Add issue reference in the changelogs (#401) - Split pseudo absences code (#402) - Add variable selection for bagging models (#405) - Add variable selection for ensemble models (#406) - Logistic regression should de-mean the data (#408) - New version using PseudoAbsences (#411) - Sampling from Boolean layers is wrong (#414)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - GBIF-v1.0.2

GBIF GBIF-v1.0.2

Diff since GBIF-v1.0.1

Merged pull requests: - Improve access to GADM (#333) (@tpoisot) - SDeMo - selection and stratification (#334) (@tpoisot) - Copernicus land cover data (#335) (@tpoisot) - Release SDT to track new data version (#339) (@tpoisot) - Update CHANGELOG.md (#340) (@tpoisot) - Make decision tree faster / more efficient (#341) (@tpoisot) - Masking vectors of layers (#343) (@gottacatchenall) - Performance improvements in SDeMo (#344) (@tpoisot) - mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall) - Export interpolate! (#348) (@tpoisot) - Balanced bootstrap in SDeMo (#349) (@tpoisot) - Add logistic regression to SDeMo (#350) (@tpoisot) - semver(sdt): v0.1.3 (#351) (@tpoisot) - Additional options for logistic regression (#352) (@tpoisot) - Fixed show method (#353) (@tpoisot) - Add support for Clustering (#354) (@tpoisot) - Add SpatialBoundaries support through an extension (#355) (@tpoisot) - Safe threading in SDeMo (#359) (@tpoisot) - Clustering quality (#360) (@tpoisot) - DistanceToEvent performance (#361) (@tpoisot) - Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot) - QoL improvements for SDeMo (#367) (@tpoisot) - Add support for NeutralLandscapes (#369) (@tpoisot) - Fix variable selection verbose output (#373) (@tpoisot) - Support for the STAC package through an extension (#374) (@tpoisot) - Shapley on novel data (#376) (@tpoisot) - Use ZipArchives to get GADM data (#378) (@tpoisot) - Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot) - Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot) - Layers cleanup - coarsen + mvstats (#386) (@tpoisot) - Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall) - Fix the zip file issue (#390) (@tpoisot) - SimpleSDMLayers v1.2.1 (#391) (@tpoisot) - SDeMo various fixes (#393) (@tpoisot) - Improve polygon masking/simplification (#396) (@tpoisot) - Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot) - Make logistic regression more memory efficient (#399) (@tpoisot) - Automatically link to issues from the changelog (#403) (@tpoisot) - PseudoAbsences.jl (#404) (@tpoisot) - Variable selection improvements (#410) (@tpoisot) - SDT new version with pseudo absences (#413) (@tpoisot) - Bug in sampling from Bool layers (#415) (@tpoisot) - SimpleSDMPolygons (#417) (@gottacatchenall) - Load and save occurrences from JSON files (#421) (@tpoisot) - Default data and plotting for OccInt (#423) (@tpoisot) - Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot)

Closed issues: - Ecoregions (#49) - Wrap MultivariateStats (#203) - STAC (#230) - Add a "cookbook" section to the manual (#297) - Add a benchmark that runs on PRs (#300) - Copernicus fractional layers (#324) - Add link to the documentation (#327) - calling a performance measure on a tuple should give a nice output (#328) - boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336) - Memory leak in variable selection? (#337) - Potential performance improvement for masking a vector of polygons (#342) - coarsen is gone (#347) - Add support for clustering quality (#356) - Update the clustering interface to work on a vector of layers (#357) - Likely erroneous use of Threads.nthreads and Threads.threadid (#358) - Add a method to save a model with logistic classifier (#363) - Improve output for logistic models (#364) - Use the data not part of training to measure valid. loss on Logistic (#365) - Improve the verbose output of variable selection (#366) - Support for NeutralLandscapes (#368) - SDeMo doesn't load some hyper-parameters (#371) - Number of variables reported during variable selection is wrong (#372) - Shapley values on a layer may not work when using a different layer than was used for training (#375) - GADM weirdness (#377) - Use ZipArchives for raster data too (#379) - The UC Davis toaster / server situation (#380) - Add support for NaturalEarth polygons (#381) - Work through documentation to remove all WorldClim and GADM calls (#382) - Use nominatim API to get geojson directly (#385) - Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387) - Bug when reading zip files from SimpleSDMDatasets (#389) - _mcsample is too restrictive about types (#392) - PolygonOps requires that the first and last points are the same (#394) - Mask for polygons should be threaded (#395) - Tweaks to the polygon masking vignette (#398) - Variable selection accidentally resets the model (#400) - Add issue reference in the changelogs (#401) - Split pseudo absences code (#402) - Add variable selection for bagging models (#405) - Add variable selection for ensemble models (#406) - Logistic regression should de-mean the data (#408) - New version using PseudoAbsences (#411) - Sampling from Boolean layers is wrong (#414)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - OccurrencesInterface-v1.1.0

OccurrencesInterface OccurrencesInterface-v1.1.0

Diff since OccurrencesInterface-v1.0.0

Merged pull requests: - Doc improvements for the top-level package (#305) (@tpoisot) - SDeMo v1.0.0 (#309) (@tpoisot) - Fauxcurrence v1.0.0 (#315) (@tpoisot) - GBIF v1.0.0 (#317) (@tpoisot) - SDT v1.0.0 (#320) (@tpoisot) - Add SDeMo compat (#321) (@tpoisot) - Fix remaining compat entries (#322) (@tpoisot) - Add boundingbox function (#326) (@tpoisot) - GBIF v1.0.1 (#330) (@tpoisot) - Update Project.toml (#331) (@tpoisot) - Improve access to GADM (#333) (@tpoisot) - SDeMo - selection and stratification (#334) (@tpoisot) - Copernicus land cover data (#335) (@tpoisot) - Release SDT to track new data version (#339) (@tpoisot) - Update CHANGELOG.md (#340) (@tpoisot) - Make decision tree faster / more efficient (#341) (@tpoisot) - Masking vectors of layers (#343) (@gottacatchenall) - Performance improvements in SDeMo (#344) (@tpoisot) - mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall) - Export interpolate! (#348) (@tpoisot) - Balanced bootstrap in SDeMo (#349) (@tpoisot) - Add logistic regression to SDeMo (#350) (@tpoisot) - semver(sdt): v0.1.3 (#351) (@tpoisot) - Additional options for logistic regression (#352) (@tpoisot) - Fixed show method (#353) (@tpoisot) - Add support for Clustering (#354) (@tpoisot) - Add SpatialBoundaries support through an extension (#355) (@tpoisot) - Safe threading in SDeMo (#359) (@tpoisot) - Clustering quality (#360) (@tpoisot) - DistanceToEvent performance (#361) (@tpoisot) - Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot) - QoL improvements for SDeMo (#367) (@tpoisot) - Add support for NeutralLandscapes (#369) (@tpoisot) - Fix variable selection verbose output (#373) (@tpoisot) - Support for the STAC package through an extension (#374) (@tpoisot) - Shapley on novel data (#376) (@tpoisot) - Use ZipArchives to get GADM data (#378) (@tpoisot) - Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot) - Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot) - Layers cleanup - coarsen + mvstats (#386) (@tpoisot) - Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall) - Fix the zip file issue (#390) (@tpoisot) - SimpleSDMLayers v1.2.1 (#391) (@tpoisot) - SDeMo various fixes (#393) (@tpoisot) - Improve polygon masking/simplification (#396) (@tpoisot) - Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot) - Make logistic regression more memory efficient (#399) (@tpoisot) - Automatically link to issues from the changelog (#403) (@tpoisot) - PseudoAbsences.jl (#404) (@tpoisot) - Variable selection improvements (#410) (@tpoisot) - SDT new version with pseudo absences (#413) (@tpoisot) - Bug in sampling from Bool layers (#415) (@tpoisot) - SimpleSDMPolygons (#417) (@gottacatchenall) - Load and save occurrences from JSON files (#421) (@tpoisot) - Default data and plotting for OccInt (#423) (@tpoisot)

Closed issues: - Ecoregions (#49) - Wrap MultivariateStats (#203) - STAC (#230) - data providers are flaky (#295) - Update gameplan (#296) - Add a "cookbook" section to the manual (#297) - Add a benchmark that runs on PRs (#300) - Tag GBIF v1.0.0 (#301) - Tag Fauxcurrences v1.0.0 (#302) - Tag SpeciesDistributionToolkit v1.0.0 (#303) - Copernicus fractional layers (#324) - Generic function to get a bounding box in WGS84 from an arbitrary object (#325) - Add link to the documentation (#327) - calling a performance measure on a tuple should give a nice output (#328) - GBIF needs patch release (#329) - boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336) - Memory leak in variable selection? (#337) - Potential performance improvement for masking a vector of polygons (#342) - coarsen is gone (#347) - Add support for clustering quality (#356) - Update the clustering interface to work on a vector of layers (#357) - Likely erroneous use of Threads.nthreads and Threads.threadid (#358) - Add a method to save a model with logistic classifier (#363) - Improve output for logistic models (#364) - Use the data not part of training to measure valid. loss on Logistic (#365) - Improve the verbose output of variable selection (#366) - Support for NeutralLandscapes (#368) - SDeMo doesn't load some hyper-parameters (#371) - Number of variables reported during variable selection is wrong (#372) - Shapley values on a layer may not work when using a different layer than was used for training (#375) - GADM weirdness (#377) - Use ZipArchives for raster data too (#379) - The UC Davis toaster / server situation (#380) - Add support for NaturalEarth polygons (#381) - Work through documentation to remove all WorldClim and GADM calls (#382) - Use nominatim API to get geojson directly (#385) - Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387) - Bug when reading zip files from SimpleSDMDatasets (#389) - _mcsample is too restrictive about types (#392) - PolygonOps requires that the first and last points are the same (#394) - Mask for polygons should be threaded (#395) - Tweaks to the polygon masking vignette (#398) - Variable selection accidentally resets the model (#400) - Add issue reference in the changelogs (#401) - Split pseudo absences code (#402) - Add variable selection for bagging models (#405) - Add variable selection for ensemble models (#406) - Logistic regression should de-mean the data (#408) - New version using PseudoAbsences (#411) - Sampling from Boolean layers is wrong (#414)

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Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.5.0

SpeciesDistributionToolkit v1.5.0

Diff since v1.4.3

The PseudoAbsences package now handles PA generation

Merged pull requests: - Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot) - Make logistic regression more memory efficient (#399) (@tpoisot) - Automatically link to issues from the changelog (#403) (@tpoisot) - PseudoAbsences.jl (#404) (@tpoisot) - Variable selection improvements (#410) (@tpoisot) - SDT new version with pseudo absences (#413) (@tpoisot) - Bug in sampling from Bool layers (#415) (@tpoisot)

Closed issues: - Add a benchmark that runs on PRs (#300) - Tweaks to the polygon masking vignette (#398) - Variable selection accidentally resets the model (#400) - Add issue reference in the changelogs (#401) - Split pseudo absences code (#402) - Add variable selection for bagging models (#405) - Add variable selection for ensemble models (#406) - Logistic regression should de-mean the data (#408) - New version using PseudoAbsences (#411) - Sampling from Boolean layers is wrong (#414)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - PseudoAbsences-v1.0.1

PseudoAbsences PseudoAbsences-v1.0.1

Diff since PseudoAbsences-v1.0.0

• fixed a bug when sampling background points from Bool layers

Merged pull requests: - Variable selection improvements (#410) (@tpoisot) - Bug in sampling from Bool layers (#415) (@tpoisot)

Closed issues: - Add a benchmark that runs on PRs (#300) - Variable selection accidentally resets the model (#400) - Add variable selection for bagging models (#405) - Add variable selection for ensemble models (#406) - Logistic regression should de-mean the data (#408) - Sampling from Boolean layers is wrong (#414)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.4.0

SDeMo SDeMo-v1.4.0

Diff since SDeMo-v1.3.4

• added support Bagging models as a component in an Ensemble
• added support for null classifiers based on Bagging models
• added variable selection for Bagging models [#405]
• added a more general syntax for variable selection (VariableSelectionStrategy)
• added a ChainedTransform type to chain two data transformation steps, useful for PCA + z-score [#408]
• fixed the issue with variable selection reseting the model variables [#400]
• added a method for noselection! where no folds are given

Merged pull requests: - Automatically link to issues from the changelog (#403) (@tpoisot) - PseudoAbsences.jl (#404) (@tpoisot) - Variable selection improvements (#410) (@tpoisot)

Closed issues: - Add a benchmark that runs on PRs (#300) - Tweaks to the polygon masking vignette (#398) - Variable selection accidentally resets the model (#400) - Add issue reference in the changelogs (#401) - Split pseudo absences code (#402) - Add variable selection for bagging models (#405) - Add variable selection for ensemble models (#406) - Logistic regression should de-mean the data (#408)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - PseudoAbsences-v1.0.0

PseudoAbsences PseudoAbsences-v1.0.0

Merged pull requests: - CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot]) - Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot) - Replace collect by values (#18) (@tpoisot) - Fix SimpleSDMLayers tests (#19) (@tpoisot) - CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot]) - Convert to WGS84 using GDALWARP if needed (#34) (@tpoisot) - CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot]) - Allow additional drivers to the geotiff writer (#47) (@tpoisot) - [GBIF] add option to look for vector of taxa (#57) (@tpoisot) - Update the vignette on stats (#58) (@tpoisot) - Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot) - CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot]) - CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot]) - Add additional metadata to the providers (#72) (@tpoisot) - Add a Tables.jl interface for layers (#82) (@tpoisot) - CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot]) - Aggregate code coverage analysis (#87) (@tpoisot) - Work on the dataset cards (#88) (@tpoisot) - Add some tests to SimpleSDMLayers (#89) (@tpoisot) - Merge git tags (#92) (@tpoisot) - [GBIF] Tables.jl (#96) (@tpoisot) - [SimpleSDMLayers] cell size (#98) (@tpoisot) - 📝 README (#100) (@tpoisot) - CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot]) - Make all layers broadcastable (#103) (@tpoisot) - 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot) - CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot]) - CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot]) - CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot]) - CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot]) - CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot]) - CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot]) - CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot]) - Bring Fauxcurrences back in the main package (#137) (@tpoisot) - CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot]) - Fix clipping with exact coordinates (#144) (@gabrieldansereau) - 🐛 correct check on layer inner type (#146) (@tpoisot) - ✨ Split a layer into tiles (#148) (@tpoisot) - Test for clipping with natural coordinates (#152) (@gabrieldansereau) - 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot) - 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot) - GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot) - ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau) - compression/format kwargs for geotiffs (#161) (@gottacatchenall) - fix typos (#162) (@spaette) - Update the documentation (#163) (@tpoisot) - Fix the GBIF issue for single argument queries (#166) (@tpoisot) - Fix the naming issue when imported from a submodule (#167) (@tpoisot) - Phylopic wrapper (#169) (@tpoisot) - Read the GBIF enums from the API endpoints (#170) (@tpoisot) - compat(phylopic): add compat entries (#176) (@tpoisot) - Update the contributing guidelines (#177) (@tpoisot) - Add GBIF/Phylopic integration (#179) (@tpoisot) - Build website for tagged version (#180) (@tpoisot) - CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot]) - CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot]) - CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot]) - Add methods to invert a layer (#188) (@tpoisot) - Fixes the geotiff open (#191) (@tpoisot) - bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot) - Improving WithinRadius performance (#196) (@gottacatchenall) - Adding Offset Arrays back as a dependency (#197) (@gottacatchenall) - Build issue on phylopic (#199) (@tpoisot) - fix(GBIF): some records are missing a synonym field (#200) (@tpoisot) - CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot]) - Change sample and add DistanceToEvent (#207) (@tpoisot) - semver(layers): fix (#209) (@tpoisot) - Bug/layers/method overwrite (#215) (@tpoisot) - CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot]) - CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot]) - CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot]) - CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot]) - Phylopic pre-compilation fix (#224) (@tpoisot) - SurfaceLike -> GridBased (#225) (@tpoisot) - Bug/sdt/surfacelike (#226) (@tpoisot) - Use CRS for SimpleSDMLayers (#227) (@tpoisot) - CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#229) (@github-actions[bot]) - Fauxcurrences v0.2.0 (#232) (@tpoisot) - SimpleSDMDatasets v0.2.0 (#233) (@tpoisot) - SimpleSDMLayers v1.0.0 (#234) (@tpoisot) - Update TagBot.yml (#246) (@tpoisot) - Update README.md (#247) (@tpoisot) - CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot]) - Github actions for documentation (#249) (@tpoisot) - semver(datasets): v0.2.1 (#250) (@tpoisot) - VitePress for the top level doc site (#251) (@tpoisot) - Cleanup tutorial + howto (#253) (@tpoisot) - Future climate tutorial update (#255) (@tpoisot) - Restore fauxcurrence page (#256) (@tpoisot) - Simplify the navbar (#257) (@tpoisot) - Add interpolate! (#260) (@tpoisot) - Add a tutorial on building the BIOCLIM model (#261) (@tpoisot) - Bug fix: source argument missing from interpolate (#262) (@tpoisot) - Add support to mask/reveal/hide by polygons (#263) (@tpoisot) - CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot]) - Additional fields to the dataset interface (#265) (@tpoisot) - Mosaic with polygons (#266) (@tpoisot) - New interpolate method (#268) (@tpoisot) - Bounding box when reading is now in WGS84 (#271) (@tpoisot) - SDeMo (#272) (@tpoisot) - Prepare main package for SDeMo interop (#273) (@tpoisot) - chore: prep for tag (#274) (@tpoisot) - Update CompatHelper.yml (#275) (@tpoisot) - Create README.md (#276) (@tpoisot) - removing unnecessary(?) return in `write_geotiff(#277) (@gottacatchenall) - SDeMo update (#282) (@tpoisot) - CHELSA url changed? (#283) (@tpoisot) - SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot) - semver(sdt): v0.1.3 (#286) (@tpoisot) - SDeMo QoL improvements (#289) (@tpoisot) - feat(demo): ensemble counterfactuals (#292) (@tpoisot) - OccurrencesInterface package (#294) (@tpoisot) - Links to all doc websites on PR (#299) (@tpoisot) - chore(occ): LICENSE (#304) (@tpoisot) - Doc improvements for the top-level package (#305) (@tpoisot) - SDeMo bugfix and QOL (#306) (@tpoisot) - Bring VIF back (#307) (@tpoisot) - SDeMo v1.0.0 (#309) (@tpoisot) - Fauxcurrence v1.0.0 (#315) (@tpoisot) - GBIF v1.0.0 (#317) (@tpoisot) - SDT v1.0.0 (#320) (@tpoisot) - Add SDeMo compat (#321) (@tpoisot) - Fix remaining compat entries (#322) (@tpoisot) - Add boundingbox function (#326) (@tpoisot) - GBIF v1.0.1 (#330) (@tpoisot) - Update Project.toml (#331) (@tpoisot) - Improve access to GADM (#333) (@tpoisot) - SDeMo - selection and stratification (#334) (@tpoisot) - Copernicus land cover data (#335) (@tpoisot) - Release SDT to track new data version (#339) (@tpoisot) - Update CHANGELOG.md (#340) (@tpoisot) - Make decision tree faster / more efficient (#341) (@tpoisot) - Masking vectors of layers (#343) (@gottacatchenall) - Performance improvements in SDeMo (#344) (@tpoisot) -mask(::Vector{<:SDMLayer}, polygon)` dispatch fix (#345) (@gottacatchenall) - Export interpolate! (#348) (@tpoisot) - Balanced bootstrap in SDeMo (#349) (@tpoisot) - Add logistic regression to SDeMo (#350) (@tpoisot) - semver(sdt): v0.1.3 (#351) (@tpoisot) - Additional options for logistic regression (#352) (@tpoisot) - Fixed show method (#353) (@tpoisot) - Add support for Clustering (#354) (@tpoisot) - Add SpatialBoundaries support through an extension (#355) (@tpoisot) - Safe threading in SDeMo (#359) (@tpoisot) - Clustering quality (#360) (@tpoisot) - DistanceToEvent performance (#361) (@tpoisot) - Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot) - QoL improvements for SDeMo (#367) (@tpoisot) - Add support for NeutralLandscapes (#369) (@tpoisot) - Fix variable selection verbose output (#373) (@tpoisot) - Support for the STAC package through an extension (#374) (@tpoisot) - Shapley on novel data (#376) (@tpoisot) - Use ZipArchives to get GADM data (#378) (@tpoisot) - Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot) - Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot) - Layers cleanup - coarsen + mvstats (#386) (@tpoisot) - Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall) - Fix the zip file issue (#390) (@tpoisot) - SimpleSDMLayers v1.2.1 (#391) (@tpoisot) - SDeMo various fixes (#393) (@tpoisot) - Improve polygon masking/simplification (#396) (@tpoisot) - Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot) - Make logistic regression more memory efficient (#399) (@tpoisot) - Automatically link to issues from the changelog (#403) (@tpoisot) - PseudoAbsences.jl (#404) (@tpoisot)

Closed issues: - Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32) - Allow options to ArchGDAL driver when saving Geotiff (#30) - ecoClimate - Climatic layers from PMIP3 CMIP5 (#33) - Add layer description to get human-readable description of layer names (#7) - Add a function to get the URL or reference for a data provider (#8) - Add a way to remove observations that are documented absences (#9) - CHELSA2 NODATA is incompatible with data type (#10) - Move pseudo-absence code to the top-level package (#11) - Unify distance generation in Fauxcurrences and pseudo-absence code (#12) - Update the GBIF docstrings (#13) - Update the model cards (#14) - Method to get the values in a layer should be values and not collect (#16) - Fix SimpleSDMLayers tests (#17) - Logo (#27) - Migrate issues about possible datasets to this repo (#28) - Clean the code handling the CRS transformation in geotiff (#35) - The order of arguments to read/save geotiffs make no sense (#38) - Vignette on scaling and quantiles (#48) - Add a method to get occurences for several taxa (#50) - The vignettes section is getting very large (#60) - The WorldClim tests are going to fail a lot (#61) - Find a way to aggregate the code coverage (#62) - Surface area of cells (#93) - Replace data frames function by a Tables.jl interface (#94) - Prepare repo for release of new versions (#95) - Add Boolean operations on Boolean layers (#99) - Link to documentation in the original repositories (#101) - Update plotting code to work with Makie as a default (#104) - TagBot trigger issue (#140) - Check the weight matrices in Fauxcurrences (#142) - Wrong coordinates returned when clipping with exact coordinates (#143) - IO not exported? (#145) - Split a layer into tiles (#147) - Add a test for clipping with exact coordinates (#149) - Avoid using stride when clipping (#150) - Add expand options to clip (#151) - Stitch returns the wrong bounding box in the end (#154) - Integrate with Phylopic (#157) - Update documentation (#158) - geotiff driver kwarg (#160) - downloaders break when imported as part of another module (#164) - GBIF queries get converted (for some reason) (#165) - Add method to download the high-res png (#171) - Add method to generate an attribution file OR string for Phylopic (#172) - List images by license when searching for silhouettes (#173) - Wrong return format for names when items=1 (#174) - Phylopic/GBIF integration (#175) - Get the website to build for stable versions (#178) - Using an unsupported keyword gives an error (but not the right one) (#186) - No method for -layer (#187) - Generate release notes that list what changes in all the packages (#189) - Default writer should be GTiff (#190) - Writing a layer is creating a file with no extension (#192) - sample does not generate the expected number of background points (#194) - cellsize returns NaN for some cells more or less at random (#198) - Wrap MultivariateStats (#203) - DuckDB (#205) - Distance to observations for background points (#206) - Check SurfaceRangeEnveloppe (#208) - Move test to @testitem (#211) - Array for a vector of layers is slow (#212) - Move vignettes out of the documentation? (#213) - Fauxcurrence overload issue (#214) - LUH² (#217) - CRS (#222) - Phylopic.jl precompiles infinitely without stopping (#223) - PaleoClim (#228) - STAC (#230) - Masking/segmentating layer based on vector (#231) - Move documentation to VitePress (#245) - Restore the Fauxcurrences tutorial (#252) - Update the tutorial for future climate data (#254) - Additional method to interpolate when we already have the destination layer (#258) - Add fields to the SimpleSDMDatasets interface (#259) - interpolate layer to same CRS/size as target layer (#267) - zeros/ones for layers is buggy - is it maintaining everything??? (#269) - The bounding box should be converted from WGS84 to the layer CRS (#270) - The fscore formula is wrong (#278) - Dispatch for Ensemble prediction is ambiguous (#279) - Define abstract types for Bagging and Ensemble (#280) - Add pop!, push!, etc to Ensemble (#281) - New versions (note to self) (#285) - SDeMo chokes on some decision trees when a single node is involved (#287) - Add maxdepth to decision trees (#288) - add a dispatch to the ConfusionMatrix functions (#290) - cannot cross-validate when using the consensus argument (#293) - data providers are flaky (#295) - Update gameplan (#296) - Add a "cookbook" section to the manual (#297) - Update the PR comment issue (#298) - Tag GBIF v1.0.0 (#301) - Tag Fauxcurrences v1.0.0 (#302) - Tag SpeciesDistributionToolkit v1.0.0 (#303) - Copernicus fractional layers (#324) - Generic function to get a bounding box in WGS84 from an arbitrary object (#325) - Add link to the documentation (#327) - calling a performance measure on a tuple should give a nice output (#328) - GBIF needs patch release (#329) - boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336) - Memory leak in variable selection? (#337) - Potential performance improvement for masking a vector of polygons (#342) - coarsen is gone (#347) - Add support for clustering quality (#356) - Update the clustering interface to work on a vector of layers (#357) - Likely erroneous use of Threads.nthreads and Threads.threadid (#358) - Add a method to save a model with logistic classifier (#363) - Improve output for logistic models (#364) - Use the data not part of training to measure valid. loss on Logistic (#365) - Improve the verbose output of variable selection (#366) - Support for NeutralLandscapes (#368) - SDeMo doesn't load some hyper-parameters (#371) - Number of variables reported during variable selection is wrong (#372) - Shapley values on a layer may not work when using a different layer than was used for training (#375) - GADM weirdness (#377) - Use ZipArchives for raster data too (#379) - The UC Davis toaster / server situation (#380) - Add support for NaturalEarth polygons (#381) - Work through documentation to remove all WorldClim and GADM calls (#382) - Use nominatim API to get geojson directly (#385) - Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387) - Bug when reading zip files from SimpleSDMDatasets (#389) - _mcsample is too restrictive about types (#392) - PolygonOps requires that the first and last points are the same (#394) - Mask for polygons should be threaded (#395) - Add issue reference in the changelogs (#401) - Split pseudo absences code (#402)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.3.4

SDeMo SDeMo-v1.3.4

Diff since SDeMo-v1.3.3

Merged pull requests: - Improve polygon masking/simplification (#396) (@tpoisot) - Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot) - Make logistic regression more memory efficient (#399) (@tpoisot)

Closed issues: - PolygonOps requires that the first and last points are the same (#394) - Mask for polygons should be threaded (#395)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMDatasets-v1.0.3

SimpleSDMDatasets SimpleSDMDatasets-v1.0.3

Diff since SimpleSDMDatasets-v1.0.2

Merged pull requests: - SimpleSDMLayers v1.2.1 (#391) (@tpoisot) - SDeMo various fixes (#393) (@tpoisot) - Improve polygon masking/simplification (#396) (@tpoisot) - Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot)

Closed issues: - SDeMo doesn't load some hyper-parameters (#371) - _mcsample is too restrictive about types (#392) - PolygonOps requires that the first and last points are the same (#394) - Mask for polygons should be threaded (#395)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.4.3

SpeciesDistributionToolkit v1.4.3

Diff since v1.4.2

Merged pull requests: - Layers cleanup - coarsen + mvstats (#386) (@tpoisot) - Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall) - Fix the zip file issue (#390) (@tpoisot) - SimpleSDMLayers v1.2.1 (#391) (@tpoisot) - SDeMo various fixes (#393) (@tpoisot) - Improve polygon masking/simplification (#396) (@tpoisot)

Closed issues: - Wrap MultivariateStats (#203) - Add a "cookbook" section to the manual (#297) - coarsen is gone (#347) - SDeMo doesn't load some hyper-parameters (#371) - Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387) - Bug when reading zip files from SimpleSDMDatasets (#389) - _mcsample is too restrictive about types (#392) - PolygonOps requires that the first and last points are the same (#394) - Mask for polygons should be threaded (#395)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.3.3

SDeMo SDeMo-v1.3.3

Diff since SDeMo-v1.3.2

Merged pull requests: - Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot) - Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot) - Layers cleanup - coarsen + mvstats (#386) (@tpoisot) - Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall) - Fix the zip file issue (#390) (@tpoisot) - SimpleSDMLayers v1.2.1 (#391) (@tpoisot) - SDeMo various fixes (#393) (@tpoisot)

Closed issues: - Wrap MultivariateStats (#203) - Add a "cookbook" section to the manual (#297) - coarsen is gone (#347) - SDeMo doesn't load some hyper-parameters (#371) - Use ZipArchives for raster data too (#379) - The UC Davis toaster / server situation (#380) - Add support for NaturalEarth polygons (#381) - Work through documentation to remove all WorldClim and GADM calls (#382) - Use nominatim API to get geojson directly (#385) - Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387) - Bug when reading zip files from SimpleSDMDatasets (#389) - _mcsample is too restrictive about types (#392)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.2.1

SimpleSDMLayers SimpleSDMLayers-v1.2.1

Diff since SimpleSDMLayers-v1.1.1

Merged pull requests: - DistanceToEvent performance (#361) (@tpoisot) - Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot) - QoL improvements for SDeMo (#367) (@tpoisot) - Add support for NeutralLandscapes (#369) (@tpoisot) - Fix variable selection verbose output (#373) (@tpoisot) - Support for the STAC package through an extension (#374) (@tpoisot) - Shapley on novel data (#376) (@tpoisot) - Use ZipArchives to get GADM data (#378) (@tpoisot) - Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot) - Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot) - Layers cleanup - coarsen + mvstats (#386) (@tpoisot) - Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall) - Fix the zip file issue (#390) (@tpoisot) - SimpleSDMLayers v1.2.1 (#391) (@tpoisot)

Closed issues: - Wrap MultivariateStats (#203) - STAC (#230) - Add a "cookbook" section to the manual (#297) - calling a performance measure on a tuple should give a nice output (#328) - boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336) - coarsen is gone (#347) - Add a method to save a model with logistic classifier (#363) - Improve output for logistic models (#364) - Use the data not part of training to measure valid. loss on Logistic (#365) - Improve the verbose output of variable selection (#366) - Support for NeutralLandscapes (#368) - Number of variables reported during variable selection is wrong (#372) - Shapley values on a layer may not work when using a different layer than was used for training (#375) - GADM weirdness (#377) - Use ZipArchives for raster data too (#379) - The UC Davis toaster / server situation (#380) - Add support for NaturalEarth polygons (#381) - Work through documentation to remove all WorldClim and GADM calls (#382) - Use nominatim API to get geojson directly (#385) - Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387) - Bug when reading zip files from SimpleSDMDatasets (#389)

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Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMDatasets-v1.0.2

SimpleSDMDatasets SimpleSDMDatasets-v1.0.2

Diff since SimpleSDMDatasets-v1.0.1

Merged pull requests: - Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot) - Layers cleanup - coarsen + mvstats (#386) (@tpoisot) - Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall) - Fix the zip file issue (#390) (@tpoisot)

Closed issues: - Wrap MultivariateStats (#203) - Add a "cookbook" section to the manual (#297) - coarsen is gone (#347) - The UC Davis toaster / server situation (#380) - Add support for NaturalEarth polygons (#381) - Work through documentation to remove all WorldClim and GADM calls (#382) - Use nominatim API to get geojson directly (#385) - Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387) - Bug when reading zip files from SimpleSDMDatasets (#389)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.4.2

SpeciesDistributionToolkit v1.4.2

Diff since v1.4.1

Merged pull requests: - Shapley on novel data (#376) (@tpoisot) - Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot) - Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot)

Closed issues: - Shapley values on a layer may not work when using a different layer than was used for training (#375) - Use ZipArchives for raster data too (#379) - The UC Davis toaster / server situation (#380) - Add support for NaturalEarth polygons (#381) - Work through documentation to remove all WorldClim and GADM calls (#382) - Use nominatim API to get geojson directly (#385)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMDatasets-v1.0.1

SimpleSDMDatasets SimpleSDMDatasets-v1.0.1

Diff since SimpleSDMDatasets-v1.0.0

Merged pull requests: - Release SDT to track new data version (#339) (@tpoisot) - Update CHANGELOG.md (#340) (@tpoisot) - Make decision tree faster / more efficient (#341) (@tpoisot) - Masking vectors of layers (#343) (@gottacatchenall) - Performance improvements in SDeMo (#344) (@tpoisot) - mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall) - Export interpolate! (#348) (@tpoisot) - Balanced bootstrap in SDeMo (#349) (@tpoisot) - Add logistic regression to SDeMo (#350) (@tpoisot) - semver(sdt): v0.1.3 (#351) (@tpoisot) - Additional options for logistic regression (#352) (@tpoisot) - Fixed show method (#353) (@tpoisot) - Add support for Clustering (#354) (@tpoisot) - Add SpatialBoundaries support through an extension (#355) (@tpoisot) - Safe threading in SDeMo (#359) (@tpoisot) - Clustering quality (#360) (@tpoisot) - DistanceToEvent performance (#361) (@tpoisot) - Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot) - QoL improvements for SDeMo (#367) (@tpoisot) - Add support for NeutralLandscapes (#369) (@tpoisot) - Fix variable selection verbose output (#373) (@tpoisot) - Support for the STAC package through an extension (#374) (@tpoisot) - Shapley on novel data (#376) (@tpoisot) - Use ZipArchives to get GADM data (#378) (@tpoisot) - Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot)

Closed issues: - STAC (#230) - calling a performance measure on a tuple should give a nice output (#328) - boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336) - Memory leak in variable selection? (#337) - Potential performance improvement for masking a vector of polygons (#342) - Add support for clustering quality (#356) - Update the clustering interface to work on a vector of layers (#357) - Likely erroneous use of Threads.nthreads and Threads.threadid (#358) - Add a method to save a model with logistic classifier (#363) - Improve output for logistic models (#364) - Use the data not part of training to measure valid. loss on Logistic (#365) - Improve the verbose output of variable selection (#366) - Support for NeutralLandscapes (#368) - Number of variables reported during variable selection is wrong (#372) - Shapley values on a layer may not work when using a different layer than was used for training (#375) - GADM weirdness (#377) - Use ZipArchives for raster data too (#379)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.3.2

SDeMo SDeMo-v1.3.2

Diff since SDeMo-v1.3.1

Merged pull requests: - Support for the STAC package through an extension (#374) (@tpoisot) - Shapley on novel data (#376) (@tpoisot) - Use ZipArchives to get GADM data (#378) (@tpoisot)

Closed issues: - STAC (#230) - Shapley values on a layer may not work when using a different layer than was used for training (#375) - GADM weirdness (#377)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.4.1

SpeciesDistributionToolkit v1.4.1

Diff since v1.4.0

Merged pull requests: - Use ZipArchives to get GADM data (#378) (@tpoisot)

Closed issues: - GADM weirdness (#377)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.4.0

SpeciesDistributionToolkit v1.4.0

Diff since v1.3.2

Merged pull requests: - QoL improvements for SDeMo (#367) (@tpoisot) - Add support for NeutralLandscapes (#369) (@tpoisot) - Fix variable selection verbose output (#373) (@tpoisot) - Support for the STAC package through an extension (#374) (@tpoisot)

Closed issues: - STAC (#230) - Add a method to save a model with logistic classifier (#363) - Improve output for logistic models (#364) - Use the data not part of training to measure valid. loss on Logistic (#365) - Improve the verbose output of variable selection (#366) - Support for NeutralLandscapes (#368) - Number of variables reported during variable selection is wrong (#372)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.3.1

SDeMo SDeMo-v1.3.1

Diff since SDeMo-v1.3.0

Merged pull requests: - Fix variable selection verbose output (#373) (@tpoisot)

Closed issues: - Number of variables reported during variable selection is wrong (#372)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.3.0

SDeMo SDeMo-v1.3.0

Diff since SDeMo-v1.2.3

Merged pull requests: - Clustering quality (#360) (@tpoisot) - DistanceToEvent performance (#361) (@tpoisot) - Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot) - QoL improvements for SDeMo (#367) (@tpoisot) - Add support for NeutralLandscapes (#369) (@tpoisot)

Closed issues: - calling a performance measure on a tuple should give a nice output (#328) - boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336) - Add support for clustering quality (#356) - Update the clustering interface to work on a vector of layers (#357) - Add a method to save a model with logistic classifier (#363) - Improve output for logistic models (#364) - Use the data not part of training to measure valid. loss on Logistic (#365) - Improve the verbose output of variable selection (#366) - Support for NeutralLandscapes (#368)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.3.2

SpeciesDistributionToolkit v1.3.2

Diff since v1.3.1

Merged pull requests: - Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot)

Closed issues: - calling a performance measure on a tuple should give a nice output (#328) - boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.3.1

SpeciesDistributionToolkit v1.3.1

Diff since v1.3.0

Merged pull requests: - Safe threading in SDeMo (#359) (@tpoisot) - Clustering quality (#360) (@tpoisot) - DistanceToEvent performance (#361) (@tpoisot)

Closed issues: - Add support for clustering quality (#356) - Update the clustering interface to work on a vector of layers (#357) - Likely erroneous use of Threads.nthreads and Threads.threadid (#358)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.1.1

SimpleSDMLayers SimpleSDMLayers-v1.1.1

Diff since SimpleSDMLayers-v1.1.0

Merged pull requests: - Add SpatialBoundaries support through an extension (#355) (@tpoisot) - Safe threading in SDeMo (#359) (@tpoisot) - Clustering quality (#360) (@tpoisot)

Closed issues: - Add support for clustering quality (#356) - Update the clustering interface to work on a vector of layers (#357) - Likely erroneous use of Threads.nthreads and Threads.threadid (#358)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.2.3

SDeMo SDeMo-v1.2.3

Diff since SDeMo-v1.2.2

Merged pull requests: - Fixed show method (#353) (@tpoisot) - Add support for Clustering (#354) (@tpoisot) - Add SpatialBoundaries support through an extension (#355) (@tpoisot) - Safe threading in SDeMo (#359) (@tpoisot)

Closed issues: - Likely erroneous use of Threads.nthreads and Threads.threadid (#358)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.3.0

SpeciesDistributionToolkit v1.3.0

Diff since v1.2.3

Merged pull requests: - Additional options for logistic regression (#352) (@tpoisot) - Fixed show method (#353) (@tpoisot) - Add support for Clustering (#354) (@tpoisot) - Add SpatialBoundaries support through an extension (#355) (@tpoisot)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.1.0

SimpleSDMLayers SimpleSDMLayers-v1.1.0

Diff since SimpleSDMLayers-v1.0.7

Merged pull requests: - Add support for Clustering (#354) (@tpoisot)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.0.7

SimpleSDMLayers SimpleSDMLayers-v1.0.7

Diff since SimpleSDMLayers-v1.0.6

Merged pull requests: - Balanced bootstrap in SDeMo (#349) (@tpoisot) - Add logistic regression to SDeMo (#350) (@tpoisot) - semver(sdt): v0.1.3 (#351) (@tpoisot) - Additional options for logistic regression (#352) (@tpoisot) - Fixed show method (#353) (@tpoisot)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.2.2

SDeMo SDeMo-v1.2.2

Diff since SDeMo-v1.2.1

Merged pull requests: - semver(sdt): v0.1.3 (#351) (@tpoisot) - Additional options for logistic regression (#352) (@tpoisot)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - v1.2.3

SpeciesDistributionToolkit v1.2.3

Diff since v1.2.2

Merged pull requests: - Performance improvements in SDeMo (#344) (@tpoisot) - Export interpolate! (#348) (@tpoisot) - Balanced bootstrap in SDeMo (#349) (@tpoisot) - Add logistic regression to SDeMo (#350) (@tpoisot) - semver(sdt): v0.1.3 (#351) (@tpoisot)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.2.1

SDeMo SDeMo-v1.2.1

Diff since SDeMo-v1.2.0

Merged pull requests: - Add logistic regression to SDeMo (#350) (@tpoisot)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.2.0

SDeMo SDeMo-v1.2.0

Diff since SDeMo-v1.1.2

Merged pull requests: - Export interpolate! (#348) (@tpoisot) - Balanced bootstrap in SDeMo (#349) (@tpoisot)

- Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.0.6

SimpleSDMLayers SimpleSDMLayers-v1.0.6

Diff since SimpleSDMLayers-v1.0.5

Merged pull requests: - Prepare main package for SDeMo interop (#273) (@tpoisot) - SDeMo update (#282) (@tpoisot) - CHELSA url changed? (#283) (@tpoisot) - SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot) - semver(sdt): v0.1.3 (#286) (@tpoisot) - SDeMo QoL improvements (#289) (@tpoisot) - feat(demo): ensemble counterfactuals (#292) (@tpoisot) - OccurrencesInterface package (#294) (@tpoisot) - Links to all doc websites on PR (#299) (@tpoisot) - chore(occ): LICENSE (#304) (@tpoisot) - Doc improvements for the top-level package (#305) (@tpoisot) - SDeMo bugfix and QOL (#306) (@tpoisot) - Bring VIF back (#307) (@tpoisot) - SDeMo v1.0.0 (#309) (@tpoisot) - Fauxcurrence v1.0.0 (#315) (@tpoisot) - GBIF v1.0.0 (#317) (@tpoisot) - SDT v1.0.0 (#320) (@tpoisot) - Add SDeMo compat (#321) (@tpoisot) - Fix remaining compat entries (#322) (@tpoisot) - Add boundingbox function (#326) (@tpoisot) - GBIF v1.0.1 (#330) (@tpoisot) - Update Project.toml (#331) (@tpoisot) - Improve access to GADM (#333) (@tpoisot) - SDeMo - selection and stratification (#334) (@tpoisot) - Copernicus land cover data (#335) (@tpoisot) - Release SDT to track new data version (#339) (@tpoisot) - Update CHANGELOG.md (#340) (@tpoisot) - Make decision tree faster / more efficient (#341) (@tpoisot) - Masking vectors of layers (#343) (@gottacatchenall) - Performance improvements in SDeMo (#344) (@tpoisot) - mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall) - Export interpolate! (#348) (@tpoisot)

Closed issues: - DuckDB (#205) - Move test to @testitem (#211) - The fscore formula is wrong (#278) - Dispatch for Ensemble prediction is ambiguous (#279) - Define abstract types for Bagging and Ensemble (#280) - Add pop!, push!, etc to Ensemble (#281) - New versions (note to self) (#285) - SDeMo chokes on some decision trees when a single node is involved (#287) - Add maxdepth to decision trees (#288) - add a dispatch to the ConfusionMatrix functions (#290) - cannot cross-validate when using the consensus argument (#293) - data providers are flaky (#295) - Update gameplan (#296) - Update the PR comment issue (#298) - Tag GBIF v1.0.0 (#301) - Tag Fauxcurrences v1.0.0 (#302) - Tag SpeciesDistributionToolkit v1.0.0 (#303) - Copernicus fractional layers (#324) - Generic function to get a bounding box in WGS84 from an arbitrary object (#325) - Add link to the documentation (#327) - GBIF needs patch release (#329) - Memory leak in variable selection? (#337) - Potential performance improvement for masking a vector of polygons (#342)

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Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.1.2

SDeMo SDeMo-v1.1.2

Diff since SDeMo-v1.1.1

Merged pull requests: - Masking vectors of layers (#343) (@gottacatchenall) - Performance improvements in SDeMo (#344) (@tpoisot) - mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall)

Closed issues: - Potential performance improvement for masking a vector of polygons (#342)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - v1.2.2

SpeciesDistributionToolkit v1.2.2

Diff since v1.2.1

Merged pull requests: - mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall)

Closed issues: - Potential performance improvement for masking a vector of polygons (#342)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - v1.2.1

SpeciesDistributionToolkit v1.2.1

Diff since v1.2.0

Merged pull requests: - Make decision tree faster / more efficient (#341) (@tpoisot) - Masking vectors of layers (#343) (@gottacatchenall)

Closed issues: - Memory leak in variable selection? (#337)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.1.1

SDeMo SDeMo-v1.1.1

Diff since SDeMo-v1.1.0

Merged pull requests: - Copernicus land cover data (#335) (@tpoisot) - Release SDT to track new data version (#339) (@tpoisot) - Update CHANGELOG.md (#340) (@tpoisot) - Make decision tree faster / more efficient (#341) (@tpoisot)

Closed issues: - Copernicus fractional layers (#324) - Add link to the documentation (#327) - Memory leak in variable selection? (#337)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - v1.2.0

SpeciesDistributionToolkit v1.2.0

Diff since v1.1.1

Merged pull requests: - SDeMo - selection and stratification (#334) (@tpoisot) - Copernicus land cover data (#335) (@tpoisot) - Release SDT to track new data version (#339) (@tpoisot) - Update CHANGELOG.md (#340) (@tpoisot)

Closed issues: - Copernicus fractional layers (#324) - Add link to the documentation (#327)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMDatasets-v1.0.0

SimpleSDMDatasets SimpleSDMDatasets-v1.0.0

Diff since SimpleSDMDatasets-v0.2.3

Merged pull requests: - Prepare main package for SDeMo interop (#273) (@tpoisot) - SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot) - semver(sdt): v0.1.3 (#286) (@tpoisot) - SDeMo QoL improvements (#289) (@tpoisot) - feat(demo): ensemble counterfactuals (#292) (@tpoisot) - OccurrencesInterface package (#294) (@tpoisot) - Links to all doc websites on PR (#299) (@tpoisot) - chore(occ): LICENSE (#304) (@tpoisot) - Doc improvements for the top-level package (#305) (@tpoisot) - SDeMo bugfix and QOL (#306) (@tpoisot) - Bring VIF back (#307) (@tpoisot) - SDeMo v1.0.0 (#309) (@tpoisot) - Fauxcurrence v1.0.0 (#315) (@tpoisot) - GBIF v1.0.0 (#317) (@tpoisot) - SDT v1.0.0 (#320) (@tpoisot) - Add SDeMo compat (#321) (@tpoisot) - Fix remaining compat entries (#322) (@tpoisot) - Add boundingbox function (#326) (@tpoisot) - GBIF v1.0.1 (#330) (@tpoisot) - Update Project.toml (#331) (@tpoisot) - Improve access to GADM (#333) (@tpoisot) - SDeMo - selection and stratification (#334) (@tpoisot) - Copernicus land cover data (#335) (@tpoisot)

Closed issues: - DuckDB (#205) - Move test to @testitem (#211) - New versions (note to self) (#285) - SDeMo chokes on some decision trees when a single node is involved (#287) - Add maxdepth to decision trees (#288) - add a dispatch to the ConfusionMatrix functions (#290) - cannot cross-validate when using the consensus argument (#293) - data providers are flaky (#295) - Update gameplan (#296) - Update the PR comment issue (#298) - Tag GBIF v1.0.0 (#301) - Tag Fauxcurrences v1.0.0 (#302) - Tag SpeciesDistributionToolkit v1.0.0 (#303) - Copernicus fractional layers (#324) - Generic function to get a bounding box in WGS84 from an arbitrary object (#325) - Add link to the documentation (#327) - GBIF needs patch release (#329)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.1.0

SDeMo SDeMo-v1.1.0

Diff since SDeMo-v1.0.0

Merged pull requests: - SDT v1.0.0 (#320) (@tpoisot) - Add SDeMo compat (#321) (@tpoisot) - Fix remaining compat entries (#322) (@tpoisot) - Add boundingbox function (#326) (@tpoisot) - GBIF v1.0.1 (#330) (@tpoisot) - Update Project.toml (#331) (@tpoisot) - Improve access to GADM (#333) (@tpoisot) - SDeMo - selection and stratification (#334) (@tpoisot)

Closed issues: - Update gameplan (#296) - Tag SpeciesDistributionToolkit v1.0.0 (#303) - Generic function to get a bounding box in WGS84 from an arbitrary object (#325) - GBIF needs patch release (#329)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - v1.1.1

SpeciesDistributionToolkit v1.1.1

Diff since v1.1.0

Merged pull requests: - GBIF v1.0.1 (#330) (@tpoisot) - Update Project.toml (#331) (@tpoisot) - Improve access to GADM (#333) (@tpoisot)

Closed issues: - GBIF needs patch release (#329)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - GBIF-v1.0.1

GBIF GBIF-v1.0.1

Diff since GBIF-v1.0.0

Merged pull requests: - SDeMo v1.0.0 (#309) (@tpoisot) - SDT v1.0.0 (#320) (@tpoisot) - Add SDeMo compat (#321) (@tpoisot) - Fix remaining compat entries (#322) (@tpoisot) - Add boundingbox function (#326) (@tpoisot) - GBIF v1.0.1 (#330) (@tpoisot) - Update Project.toml (#331) (@tpoisot)

Closed issues: - Update gameplan (#296) - Tag SpeciesDistributionToolkit v1.0.0 (#303) - Generic function to get a bounding box in WGS84 from an arbitrary object (#325) - GBIF needs patch release (#329)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - v1.1.0

SpeciesDistributionToolkit v1.1.0

Diff since v1.0.0

Merged pull requests: - Add boundingbox function (#326) (@tpoisot)

Closed issues: - Generic function to get a bounding box in WGS84 from an arbitrary object (#325)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - v1.0.0

SpeciesDistributionToolkit v1.0.0

Diff since v0.1.3

Merged pull requests: - SDeMo QoL improvements (#289) (@tpoisot) - feat(demo): ensemble counterfactuals (#292) (@tpoisot) - OccurrencesInterface package (#294) (@tpoisot) - Links to all doc websites on PR (#299) (@tpoisot) - chore(occ): LICENSE (#304) (@tpoisot) - Doc improvements for the top-level package (#305) (@tpoisot) - SDeMo bugfix and QOL (#306) (@tpoisot) - Bring VIF back (#307) (@tpoisot) - SDeMo v1.0.0 (#309) (@tpoisot) - Fauxcurrence v1.0.0 (#315) (@tpoisot) - GBIF v1.0.0 (#317) (@tpoisot) - SDT v1.0.0 (#320) (@tpoisot) - Add SDeMo compat (#321) (@tpoisot) - Fix remaining compat entries (#322) (@tpoisot)

Closed issues: - DuckDB (#205) - Move test to @testitem (#211) - SDeMo chokes on some decision trees when a single node is involved (#287) - Add maxdepth to decision trees (#288) - add a dispatch to the ConfusionMatrix functions (#290) - cannot cross-validate when using the consensus argument (#293) - data providers are flaky (#295) - Update gameplan (#296) - Update the PR comment issue (#298) - Tag GBIF v1.0.0 (#301) - Tag Fauxcurrences v1.0.0 (#302) - Tag SpeciesDistributionToolkit v1.0.0 (#303)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v1.0.0

SDeMo SDeMo-v1.0.0

Diff since SDeMo-v0.0.7

Merged pull requests: - Doc improvements for the top-level package (#305) (@tpoisot) - SDeMo v1.0.0 (#309) (@tpoisot) - Fauxcurrence v1.0.0 (#315) (@tpoisot) - GBIF v1.0.0 (#317) (@tpoisot)

Closed issues: - data providers are flaky (#295) - Tag GBIF v1.0.0 (#301) - Tag Fauxcurrences v1.0.0 (#302)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - GBIF-v1.0.0

GBIF GBIF-v1.0.0

Diff since GBIF-v0.4.5

Merged pull requests: - Use CRS for SimpleSDMLayers (#227) (@tpoisot) - CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#229) (@github-actions[bot]) - Fauxcurrences v0.2.0 (#232) (@tpoisot) - SimpleSDMDatasets v0.2.0 (#233) (@tpoisot) - SimpleSDMLayers v1.0.0 (#234) (@tpoisot) - Update TagBot.yml (#246) (@tpoisot) - Update README.md (#247) (@tpoisot) - CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot]) - Github actions for documentation (#249) (@tpoisot) - semver(datasets): v0.2.1 (#250) (@tpoisot) - VitePress for the top level doc site (#251) (@tpoisot) - Cleanup tutorial + howto (#253) (@tpoisot) - Future climate tutorial update (#255) (@tpoisot) - Restore fauxcurrence page (#256) (@tpoisot) - Simplify the navbar (#257) (@tpoisot) - Add interpolate! (#260) (@tpoisot) - Add a tutorial on building the BIOCLIM model (#261) (@tpoisot) - Bug fix: source argument missing from interpolate (#262) (@tpoisot) - Add support to mask/reveal/hide by polygons (#263) (@tpoisot) - CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot]) - Additional fields to the dataset interface (#265) (@tpoisot) - Mosaic with polygons (#266) (@tpoisot) - New interpolate method (#268) (@tpoisot) - Bounding box when reading is now in WGS84 (#271) (@tpoisot) - SDeMo (#272) (@tpoisot) - Prepare main package for SDeMo interop (#273) (@tpoisot) - chore: prep for tag (#274) (@tpoisot) - Update CompatHelper.yml (#275) (@tpoisot) - Create README.md (#276) (@tpoisot) - removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall) - SDeMo update (#282) (@tpoisot) - CHELSA url changed? (#283) (@tpoisot) - SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot) - semver(sdt): v0.1.3 (#286) (@tpoisot) - SDeMo QoL improvements (#289) (@tpoisot) - feat(demo): ensemble counterfactuals (#292) (@tpoisot) - OccurrencesInterface package (#294) (@tpoisot) - Links to all doc websites on PR (#299) (@tpoisot) - chore(occ): LICENSE (#304) (@tpoisot) - Doc improvements for the top-level package (#305) (@tpoisot) - SDeMo bugfix and QOL (#306) (@tpoisot) - Bring VIF back (#307) (@tpoisot) - Fauxcurrence v1.0.0 (#315) (@tpoisot) - GBIF v1.0.0 (#317) (@tpoisot)

Closed issues: - ecoClimate - Climatic layers from PMIP3 CMIP5 (#33) - Logo (#27) - Generate release notes that list what changes in all the packages (#189) - DuckDB (#205) - Move test to @testitem (#211) - Move vignettes out of the documentation? (#213) - LUH² (#217) - PaleoClim (#228) - Masking/segmentating layer based on vector (#231) - Move documentation to VitePress (#245) - Restore the Fauxcurrences tutorial (#252) - Update the tutorial for future climate data (#254) - Additional method to interpolate when we already have the destination layer (#258) - Add fields to the SimpleSDMDatasets interface (#259) - interpolate layer to same CRS/size as target layer (#267) - zeros/ones for layers is buggy - is it maintaining everything??? (#269) - The bounding box should be converted from WGS84 to the layer CRS (#270) - The fscore formula is wrong (#278) - Dispatch for Ensemble prediction is ambiguous (#279) - Define abstract types for Bagging and Ensemble (#280) - Add pop!, push!, etc to Ensemble (#281) - New versions (note to self) (#285) - SDeMo chokes on some decision trees when a single node is involved (#287) - Add maxdepth to decision trees (#288) - add a dispatch to the ConfusionMatrix functions (#290) - cannot cross-validate when using the consensus argument (#293) - data providers are flaky (#295) - Update the PR comment issue (#298) - Tag GBIF v1.0.0 (#301) - Tag Fauxcurrences v1.0.0 (#302)

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Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - Fauxcurrences-v1.0.0

Fauxcurrences Fauxcurrences-v1.0.0

Diff since Fauxcurrences-v0.2.0

Merged pull requests: - CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot]) - Github actions for documentation (#249) (@tpoisot) - semver(datasets): v0.2.1 (#250) (@tpoisot) - VitePress for the top level doc site (#251) (@tpoisot) - Cleanup tutorial + howto (#253) (@tpoisot) - Future climate tutorial update (#255) (@tpoisot) - Restore fauxcurrence page (#256) (@tpoisot) - Simplify the navbar (#257) (@tpoisot) - Add interpolate! (#260) (@tpoisot) - Add a tutorial on building the BIOCLIM model (#261) (@tpoisot) - Bug fix: source argument missing from interpolate (#262) (@tpoisot) - Add support to mask/reveal/hide by polygons (#263) (@tpoisot) - CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot]) - Additional fields to the dataset interface (#265) (@tpoisot) - Mosaic with polygons (#266) (@tpoisot) - New interpolate method (#268) (@tpoisot) - Bounding box when reading is now in WGS84 (#271) (@tpoisot) - SDeMo (#272) (@tpoisot) - Prepare main package for SDeMo interop (#273) (@tpoisot) - chore: prep for tag (#274) (@tpoisot) - Update CompatHelper.yml (#275) (@tpoisot) - Create README.md (#276) (@tpoisot) - removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall) - SDeMo update (#282) (@tpoisot) - CHELSA url changed? (#283) (@tpoisot) - SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot) - semver(sdt): v0.1.3 (#286) (@tpoisot) - SDeMo QoL improvements (#289) (@tpoisot) - feat(demo): ensemble counterfactuals (#292) (@tpoisot) - OccurrencesInterface package (#294) (@tpoisot) - Links to all doc websites on PR (#299) (@tpoisot) - chore(occ): LICENSE (#304) (@tpoisot) - Doc improvements for the top-level package (#305) (@tpoisot) - SDeMo bugfix and QOL (#306) (@tpoisot) - Bring VIF back (#307) (@tpoisot) - Fauxcurrence v1.0.0 (#315) (@tpoisot)

Closed issues: - DuckDB (#205) - Move test to @testitem (#211) - LUH² (#217) - Masking/segmentating layer based on vector (#231) - Move documentation to VitePress (#245) - Restore the Fauxcurrences tutorial (#252) - Update the tutorial for future climate data (#254) - Additional method to interpolate when we already have the destination layer (#258) - Add fields to the SimpleSDMDatasets interface (#259) - interpolate layer to same CRS/size as target layer (#267) - zeros/ones for layers is buggy - is it maintaining everything??? (#269) - The bounding box should be converted from WGS84 to the layer CRS (#270) - The fscore formula is wrong (#278) - Dispatch for Ensemble prediction is ambiguous (#279) - Define abstract types for Bagging and Ensemble (#280) - Add pop!, push!, etc to Ensemble (#281) - New versions (note to self) (#285) - SDeMo chokes on some decision trees when a single node is involved (#287) - Add maxdepth to decision trees (#288) - add a dispatch to the ConfusionMatrix functions (#290) - cannot cross-validate when using the consensus argument (#293) - data providers are flaky (#295) - Update the PR comment issue (#298) - Tag Fauxcurrences v1.0.0 (#302)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - OccurrencesInterface-v1.0.0

OccurrencesInterface OccurrencesInterface-v1.0.0

Merged pull requests: - CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot]) - Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot) - Replace collect by values (#18) (@tpoisot) - Fix SimpleSDMLayers tests (#19) (@tpoisot) - CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot]) - Convert to WGS84 using GDALWARP if needed (#34) (@tpoisot) - CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot]) - Allow additional drivers to the geotiff writer (#47) (@tpoisot) - [GBIF] add option to look for vector of taxa (#57) (@tpoisot) - Update the vignette on stats (#58) (@tpoisot) - Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot) - CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot]) - CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot]) - Add additional metadata to the providers (#72) (@tpoisot) - Add a Tables.jl interface for layers (#82) (@tpoisot) - CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot]) - Aggregate code coverage analysis (#87) (@tpoisot) - Work on the dataset cards (#88) (@tpoisot) - Add some tests to SimpleSDMLayers (#89) (@tpoisot) - Merge git tags (#92) (@tpoisot) - [GBIF] Tables.jl (#96) (@tpoisot) - [SimpleSDMLayers] cell size (#98) (@tpoisot) - 📝 README (#100) (@tpoisot) - CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot]) - Make all layers broadcastable (#103) (@tpoisot) - 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot) - CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot]) - CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot]) - CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot]) - CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot]) - CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot]) - CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot]) - CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot]) - Bring Fauxcurrences back in the main package (#137) (@tpoisot) - CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot]) - Fix clipping with exact coordinates (#144) (@gabrieldansereau) - 🐛 correct check on layer inner type (#146) (@tpoisot) - ✨ Split a layer into tiles (#148) (@tpoisot) - Test for clipping with natural coordinates (#152) (@gabrieldansereau) - 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot) - 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot) - GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot) - ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau) - compression/format kwargs for geotiffs (#161) (@gottacatchenall) - fix typos (#162) (@spaette) - Update the documentation (#163) (@tpoisot) - Fix the GBIF issue for single argument queries (#166) (@tpoisot) - Fix the naming issue when imported from a submodule (#167) (@tpoisot) - Phylopic wrapper (#169) (@tpoisot) - Read the GBIF enums from the API endpoints (#170) (@tpoisot) - compat(phylopic): add compat entries (#176) (@tpoisot) - Update the contributing guidelines (#177) (@tpoisot) - Add GBIF/Phylopic integration (#179) (@tpoisot) - Build website for tagged version (#180) (@tpoisot) - CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot]) - CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot]) - CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot]) - Add methods to invert a layer (#188) (@tpoisot) - Fixes the geotiff open (#191) (@tpoisot) - bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot) - Improving WithinRadius performance (#196) (@gottacatchenall) - Adding Offset Arrays back as a dependency (#197) (@gottacatchenall) - Build issue on phylopic (#199) (@tpoisot) - fix(GBIF): some records are missing a synonym field (#200) (@tpoisot) - CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot]) - Change sample and add DistanceToEvent (#207) (@tpoisot) - semver(layers): fix (#209) (@tpoisot) - Bug/layers/method overwrite (#215) (@tpoisot) - CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot]) - CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot]) - CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot]) - CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot]) - Phylopic pre-compilation fix (#224) (@tpoisot) - SurfaceLike -> GridBased (#225) (@tpoisot) - Bug/sdt/surfacelike (#226) (@tpoisot) - Use CRS for SimpleSDMLayers (#227) (@tpoisot) - CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#229) (@github-actions[bot]) - Fauxcurrences v0.2.0 (#232) (@tpoisot) - SimpleSDMDatasets v0.2.0 (#233) (@tpoisot) - SimpleSDMLayers v1.0.0 (#234) (@tpoisot) - Update TagBot.yml (#246) (@tpoisot) - Update README.md (#247) (@tpoisot) - CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot]) - Github actions for documentation (#249) (@tpoisot) - semver(datasets): v0.2.1 (#250) (@tpoisot) - VitePress for the top level doc site (#251) (@tpoisot) - Cleanup tutorial + howto (#253) (@tpoisot) - Future climate tutorial update (#255) (@tpoisot) - Restore fauxcurrence page (#256) (@tpoisot) - Simplify the navbar (#257) (@tpoisot) - Add interpolate! (#260) (@tpoisot) - Add a tutorial on building the BIOCLIM model (#261) (@tpoisot) - Bug fix: source argument missing from interpolate (#262) (@tpoisot) - Add support to mask/reveal/hide by polygons (#263) (@tpoisot) - CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot]) - Additional fields to the dataset interface (#265) (@tpoisot) - Mosaic with polygons (#266) (@tpoisot) - New interpolate method (#268) (@tpoisot) - Bounding box when reading is now in WGS84 (#271) (@tpoisot) - SDeMo (#272) (@tpoisot) - Prepare main package for SDeMo interop (#273) (@tpoisot) - chore: prep for tag (#274) (@tpoisot) - Update CompatHelper.yml (#275) (@tpoisot) - Create README.md (#276) (@tpoisot) - removing unnecessary(?) return in `write_geotiff` (#277) (@gottacatchenall) - SDeMo update (#282) (@tpoisot) - CHELSA url changed? (#283) (@tpoisot) - SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot) - semver(sdt): v0.1.3 (#286) (@tpoisot) - SDeMo QoL improvements (#289) (@tpoisot) - feat(demo): ensemble counterfactuals (#292) (@tpoisot) - OccurrencesInterface package (#294) (@tpoisot) - Links to all doc websites on PR (#299) (@tpoisot) - chore(occ): LICENSE (#304) (@tpoisot)

Closed issues: - Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32) - Allow options to ArchGDAL driver when saving Geotiff (#30) - ecoClimate - Climatic layers from PMIP3 CMIP5 (#33) - Add layer description to get human-readable description of layer names (#7) - Add a function to get the URL or reference for a data provider (#8) - Add a way to remove observations that are documented absences (#9) - CHELSA2 NODATA is incompatible with data type (#10) - Move pseudo-absence code to the top-level package (#11) - Unify distance generation in Fauxcurrences and pseudo-absence code (#12) - Update the GBIF docstrings (#13) - Update the model cards (#14) - Method to get the values in a layer should be values and not collect (#16) - Fix SimpleSDMLayers tests (#17) - Logo (#27) - Migrate issues about possible datasets to this repo (#28) - Clean the code handling the CRS transformation in geotiff (#35) - The order of arguments to read/save geotiffs make no sense (#38) - Vignette on scaling and quantiles (#48) - Add a method to get occurences for several taxa (#50) - The vignettes section is getting very large (#60) - The WorldClim tests are going to fail a lot (#61) - Find a way to aggregate the code coverage (#62) - Surface area of cells (#93) - Replace data frames function by a Tables.jl interface (#94) - Prepare repo for release of new versions (#95) - Add Boolean operations on Boolean layers (#99) - Link to documentation in the original repositories (#101) - Update plotting code to work with Makie as a default (#104) - TagBot trigger issue (#140) - Check the weight matrices in Fauxcurrences (#142) - Wrong coordinates returned when clipping with exact coordinates (#143) - IO not exported? (#145) - Split a layer into tiles (#147) - Add a test for clipping with exact coordinates (#149) - Avoid using stride when clipping (#150) - Add expand options to clip (#151) - Stitch returns the wrong bounding box in the end (#154) - Integrate with Phylopic (#157) - Update documentation (#158) - geotiff driver kwarg (#160) - downloaders break when imported as part of another module (#164) - GBIF queries get converted (for some reason) (#165) - Add method to download the high-res png (#171) - Add method to generate an attribution file OR string for Phylopic (#172) - List images by license when searching for silhouettes (#173) - Wrong return format for names when items=1 (#174) - Phylopic/GBIF integration (#175) - Get the website to build for stable versions (#178) - Using an unsupported keyword gives an error (but not the right one) (#186) - No method for -layer (#187) - Generate release notes that list what changes in all the packages (#189) - Default writer should be GTiff (#190) - Writing a layer is creating a file with no extension (#192) - sample does not generate the expected number of background points (#194) - cellsize returns NaN for some cells more or less at random (#198) - Distance to observations for background points (#206) - Check SurfaceRangeEnveloppe (#208) - Move test to @testitem (#211) - Array for a vector of layers is slow (#212) - Move vignettes out of the documentation? (#213) - Fauxcurrence overload issue (#214) - LUH² (#217) - CRS (#222) - Phylopic.jl precompiles infinitely without stopping (#223) - PaleoClim (#228) - Masking/segmentating layer based on vector (#231) - Move documentation to VitePress (#245) - Restore the Fauxcurrences tutorial (#252) - Update the tutorial for future climate data (#254) - Additional method to interpolate when we already have the destination layer (#258) - Add fields to the SimpleSDMDatasets interface (#259) - interpolate layer to same CRS/size as target layer (#267) - zeros/ones for layers is buggy - is it maintaining everything??? (#269) - The bounding box should be converted from WGS84 to the layer CRS (#270) - The fscore formula is wrong (#278) - Dispatch for Ensemble prediction is ambiguous (#279) - Define abstract types for Bagging and Ensemble (#280) - Add pop!, push!, etc to Ensemble (#281) - New versions (note to self) (#285) - SDeMo chokes on some decision trees when a single node is involved (#287) - Add maxdepth to decision trees (#288) - Update the PR comment issue (#298)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v0.0.7

SDeMo SDeMo-v0.0.7

Diff since SDeMo-v0.0.6

Merged pull requests: - Bring VIF back (#307) (@tpoisot)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v0.0.6

SDeMo SDeMo-v0.0.6

Diff since SDeMo-v0.0.5

Merged pull requests: - OccurrencesInterface package (#294) (@tpoisot) - Links to all doc websites on PR (#299) (@tpoisot) - chore(occ): LICENSE (#304) (@tpoisot) - SDeMo bugfix and QOL (#306) (@tpoisot)

Closed issues: - Move test to @testitem (#211) - add a dispatch to the ConfusionMatrix functions (#290) - cannot cross-validate when using the consensus argument (#293) - Update the PR comment issue (#298)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v0.0.5

SDeMo SDeMo-v0.0.5

Diff since SDeMo-v0.0.4

Merged pull requests: - feat(demo): ensemble counterfactuals (#292) (@tpoisot)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v0.0.4

SDeMo SDeMo-v0.0.4

Diff since SDeMo-v0.0.3

Merged pull requests: - semver(sdt): v0.1.3 (#286) (@tpoisot) - SDeMo QoL improvements (#289) (@tpoisot)

Closed issues: - New versions (note to self) (#285) - SDeMo chokes on some decision trees when a single node is involved (#287) - Add maxdepth to decision trees (#288)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - v0.1.3

SpeciesDistributionToolkit v0.1.3

Diff since v0.1.2

Merged pull requests: - SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot) - semver(sdt): v0.1.3 (#286) (@tpoisot)

Closed issues: - New versions (note to self) (#285)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SDeMo-v0.0.3

SDeMo SDeMo-v0.0.3

Merged pull requests: - CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot]) - Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot) - Replace collect by values (#18) (@tpoisot) - Fix SimpleSDMLayers tests (#19) (@tpoisot) - CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot]) - Convert to WGS84 using GDALWARP if needed (#34) (@tpoisot) - CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot]) - Allow additional drivers to the geotiff writer (#47) (@tpoisot) - [GBIF] add option to look for vector of taxa (#57) (@tpoisot) - Update the vignette on stats (#58) (@tpoisot) - Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot) - CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot]) - CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot]) - Add additional metadata to the providers (#72) (@tpoisot) - Add a Tables.jl interface for layers (#82) (@tpoisot) - CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot]) - Aggregate code coverage analysis (#87) (@tpoisot) - Work on the dataset cards (#88) (@tpoisot) - Add some tests to SimpleSDMLayers (#89) (@tpoisot) - Merge git tags (#92) (@tpoisot) - [GBIF] Tables.jl (#96) (@tpoisot) - [SimpleSDMLayers] cell size (#98) (@tpoisot) - 📝 README (#100) (@tpoisot) - CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot]) - Make all layers broadcastable (#103) (@tpoisot) - 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot) - CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot]) - CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot]) - CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot]) - CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot]) - CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot]) - CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot]) - CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot]) - Bring Fauxcurrences back in the main package (#137) (@tpoisot) - CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot]) - Fix clipping with exact coordinates (#144) (@gabrieldansereau) - 🐛 correct check on layer inner type (#146) (@tpoisot) - ✨ Split a layer into tiles (#148) (@tpoisot) - Test for clipping with natural coordinates (#152) (@gabrieldansereau) - 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot) - 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot) - GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot) - ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau) - compression/format kwargs for geotiffs (#161) (@gottacatchenall) - fix typos (#162) (@spaette) - Update the documentation (#163) (@tpoisot) - Fix the GBIF issue for single argument queries (#166) (@tpoisot) - Fix the naming issue when imported from a submodule (#167) (@tpoisot) - Phylopic wrapper (#169) (@tpoisot) - Read the GBIF enums from the API endpoints (#170) (@tpoisot) - compat(phylopic): add compat entries (#176) (@tpoisot) - Update the contributing guidelines (#177) (@tpoisot) - Add GBIF/Phylopic integration (#179) (@tpoisot) - Build website for tagged version (#180) (@tpoisot) - CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot]) - CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot]) - CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot]) - Add methods to invert a layer (#188) (@tpoisot) - Fixes the geotiff open (#191) (@tpoisot) - bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot) - Improving WithinRadius performance (#196) (@gottacatchenall) - Adding Offset Arrays back as a dependency (#197) (@gottacatchenall) - Build issue on phylopic (#199) (@tpoisot) - fix(GBIF): some records are missing a synonym field (#200) (@tpoisot) - CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot]) - Change sample and add DistanceToEvent (#207) (@tpoisot) - semver(layers): fix (#209) (@tpoisot) - Bug/layers/method overwrite (#215) (@tpoisot) - CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot]) - CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot]) - CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot]) - CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot]) - Phylopic pre-compilation fix (#224) (@tpoisot) - SurfaceLike -> GridBased (#225) (@tpoisot) - Bug/sdt/surfacelike (#226) (@tpoisot) - Use CRS for SimpleSDMLayers (#227) (@tpoisot) - CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#229) (@github-actions[bot]) - Fauxcurrences v0.2.0 (#232) (@tpoisot) - SimpleSDMDatasets v0.2.0 (#233) (@tpoisot) - SimpleSDMLayers v1.0.0 (#234) (@tpoisot) - Update TagBot.yml (#246) (@tpoisot) - Update README.md (#247) (@tpoisot) - CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot]) - Github actions for documentation (#249) (@tpoisot) - semver(datasets): v0.2.1 (#250) (@tpoisot) - VitePress for the top level doc site (#251) (@tpoisot) - Cleanup tutorial + howto (#253) (@tpoisot) - Future climate tutorial update (#255) (@tpoisot) - Restore fauxcurrence page (#256) (@tpoisot) - Simplify the navbar (#257) (@tpoisot) - Add interpolate! (#260) (@tpoisot) - Add a tutorial on building the BIOCLIM model (#261) (@tpoisot) - Bug fix: source argument missing from interpolate (#262) (@tpoisot) - Add support to mask/reveal/hide by polygons (#263) (@tpoisot) - CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot]) - Additional fields to the dataset interface (#265) (@tpoisot) - Mosaic with polygons (#266) (@tpoisot) - New interpolate method (#268) (@tpoisot) - Bounding box when reading is now in WGS84 (#271) (@tpoisot) - SDeMo (#272) (@tpoisot) - Prepare main package for SDeMo interop (#273) (@tpoisot) - chore: prep for tag (#274) (@tpoisot) - Update CompatHelper.yml (#275) (@tpoisot) - Create README.md (#276) (@tpoisot) - removing unnecessary(?) return in `write_geotiff` (#277) (@gottacatchenall) - SDeMo update (#282) (@tpoisot) - CHELSA url changed? (#283) (@tpoisot) - SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot)

Closed issues: - Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32) - Allow options to ArchGDAL driver when saving Geotiff (#30) - ecoClimate - Climatic layers from PMIP3 CMIP5 (#33) - Add layer description to get human-readable description of layer names (#7) - Add a function to get the URL or reference for a data provider (#8) - Add a way to remove observations that are documented absences (#9) - CHELSA2 NODATA is incompatible with data type (#10) - Move pseudo-absence code to the top-level package (#11) - Unify distance generation in Fauxcurrences and pseudo-absence code (#12) - Update the GBIF docstrings (#13) - Update the model cards (#14) - Method to get the values in a layer should be values and not collect (#16) - Fix SimpleSDMLayers tests (#17) - Logo (#27) - Migrate issues about possible datasets to this repo (#28) - Clean the code handling the CRS transformation in geotiff (#35) - The order of arguments to read/save geotiffs make no sense (#38) - Vignette on scaling and quantiles (#48) - Add a method to get occurences for several taxa (#50) - The vignettes section is getting very large (#60) - The WorldClim tests are going to fail a lot (#61) - Find a way to aggregate the code coverage (#62) - Surface area of cells (#93) - Replace data frames function by a Tables.jl interface (#94) - Prepare repo for release of new versions (#95) - Add Boolean operations on Boolean layers (#99) - Link to documentation in the original repositories (#101) - Update plotting code to work with Makie as a default (#104) - TagBot trigger issue (#140) - Check the weight matrices in Fauxcurrences (#142) - Wrong coordinates returned when clipping with exact coordinates (#143) - IO not exported? (#145) - Split a layer into tiles (#147) - Add a test for clipping with exact coordinates (#149) - Avoid using stride when clipping (#150) - Add expand options to clip (#151) - Stitch returns the wrong bounding box in the end (#154) - Integrate with Phylopic (#157) - Update documentation (#158) - geotiff driver kwarg (#160) - downloaders break when imported as part of another module (#164) - GBIF queries get converted (for some reason) (#165) - Add method to download the high-res png (#171) - Add method to generate an attribution file OR string for Phylopic (#172) - List images by license when searching for silhouettes (#173) - Wrong return format for names when items=1 (#174) - Phylopic/GBIF integration (#175) - Get the website to build for stable versions (#178) - Using an unsupported keyword gives an error (but not the right one) (#186) - No method for -layer (#187) - Generate release notes that list what changes in all the packages (#189) - Default writer should be GTiff (#190) - Writing a layer is creating a file with no extension (#192) - sample does not generate the expected number of background points (#194) - cellsize returns NaN for some cells more or less at random (#198) - Distance to observations for background points (#206) - Check SurfaceRangeEnveloppe (#208) - Array for a vector of layers is slow (#212) - Move vignettes out of the documentation? (#213) - Fauxcurrence overload issue (#214) - LUH² (#217) - CRS (#222) - Phylopic.jl precompiles infinitely without stopping (#223) - PaleoClim (#228) - Masking/segmentating layer based on vector (#231) - Move documentation to VitePress (#245) - Restore the Fauxcurrences tutorial (#252) - Update the tutorial for future climate data (#254) - Additional method to interpolate when we already have the destination layer (#258) - Add fields to the SimpleSDMDatasets interface (#259) - interpolate layer to same CRS/size as target layer (#267) - zeros/ones for layers is buggy - is it maintaining everything??? (#269) - The bounding box should be converted from WGS84 to the layer CRS (#270) - The fscore formula is wrong (#278) - Dispatch for Ensemble prediction is ambiguous (#279) - Define abstract types for Bagging and Ensemble (#280) - Add pop!, push!, etc to Ensemble (#281)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - v0.1.2

SpeciesDistributionToolkit v0.1.2

Diff since v0.1.1

Merged pull requests: - Add support to mask/reveal/hide by polygons (#263) (@tpoisot) - CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot]) - Additional fields to the dataset interface (#265) (@tpoisot) - Mosaic with polygons (#266) (@tpoisot) - New interpolate method (#268) (@tpoisot) - Bounding box when reading is now in WGS84 (#271) (@tpoisot) - SDeMo (#272) (@tpoisot) - Prepare main package for SDeMo interop (#273) (@tpoisot) - chore: prep for tag (#274) (@tpoisot) - Update CompatHelper.yml (#275) (@tpoisot) - Create README.md (#276) (@tpoisot) - removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall) - SDeMo update (#282) (@tpoisot) - CHELSA url changed? (#283) (@tpoisot)

Closed issues: - LUH² (#217) - Masking/segmentating layer based on vector (#231) - Add fields to the SimpleSDMDatasets interface (#259) - interpolate layer to same CRS/size as target layer (#267) - zeros/ones for layers is buggy - is it maintaining everything??? (#269) - The bounding box should be converted from WGS84 to the layer CRS (#270) - The fscore formula is wrong (#278) - Dispatch for Ensemble prediction is ambiguous (#279) - Define abstract types for Bagging and Ensemble (#280) - Add pop!, push!, etc to Ensemble (#281)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMDatasets-v0.2.3

SimpleSDMDatasets SimpleSDMDatasets-v0.2.3

Diff since SimpleSDMDatasets-v0.2.2

Merged pull requests: - Mosaic with polygons (#266) (@tpoisot) - New interpolate method (#268) (@tpoisot) - Bounding box when reading is now in WGS84 (#271) (@tpoisot) - SDeMo (#272) (@tpoisot) - chore: prep for tag (#274) (@tpoisot) - Update CompatHelper.yml (#275) (@tpoisot) - Create README.md (#276) (@tpoisot) - removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall) - SDeMo update (#282) (@tpoisot) - CHELSA url changed? (#283) (@tpoisot)

Closed issues: - interpolate layer to same CRS/size as target layer (#267) - zeros/ones for layers is buggy - is it maintaining everything??? (#269) - The bounding box should be converted from WGS84 to the layer CRS (#270) - The fscore formula is wrong (#278) - Dispatch for Ensemble prediction is ambiguous (#279) - Define abstract types for Bagging and Ensemble (#280) - Add pop!, push!, etc to Ensemble (#281)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.0.5

SimpleSDMLayers SimpleSDMLayers-v1.0.5

Diff since SimpleSDMLayers-v1.0.4

Merged pull requests: - SDeMo (#272) (@tpoisot) - chore: prep for tag (#274) (@tpoisot) - Update CompatHelper.yml (#275) (@tpoisot) - Create README.md (#276) (@tpoisot) - removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.0.4

SimpleSDMLayers SimpleSDMLayers-v1.0.4

Diff since SimpleSDMLayers-v1.0.3

Merged pull requests: - Mosaic with polygons (#266) (@tpoisot) - Bounding box when reading is now in WGS84 (#271) (@tpoisot)

Closed issues: - zeros/ones for layers is buggy - is it maintaining everything??? (#269) - The bounding box should be converted from WGS84 to the layer CRS (#270)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.0.3

SimpleSDMLayers SimpleSDMLayers-v1.0.3

Diff since SimpleSDMLayers-v1.0.2

Merged pull requests: - Add a tutorial on building the BIOCLIM model (#261) (@tpoisot) - Add support to mask/reveal/hide by polygons (#263) (@tpoisot) - CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot]) - Additional fields to the dataset interface (#265) (@tpoisot) - New interpolate method (#268) (@tpoisot)

Closed issues: - LUH² (#217) - Masking/segmentating layer based on vector (#231) - Add fields to the SimpleSDMDatasets interface (#259) - interpolate layer to same CRS/size as target layer (#267)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMDatasets-v0.2.2

SimpleSDMDatasets SimpleSDMDatasets-v0.2.2

Diff since SimpleSDMDatasets-v0.2.1

Merged pull requests: - VitePress for the top level doc site (#251) (@tpoisot) - Cleanup tutorial + howto (#253) (@tpoisot) - Future climate tutorial update (#255) (@tpoisot) - Restore fauxcurrence page (#256) (@tpoisot) - Simplify the navbar (#257) (@tpoisot) - Add interpolate! (#260) (@tpoisot) - Add a tutorial on building the BIOCLIM model (#261) (@tpoisot) - Bug fix: source argument missing from interpolate (#262) (@tpoisot) - Add support to mask/reveal/hide by polygons (#263) (@tpoisot) - CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot]) - Additional fields to the dataset interface (#265) (@tpoisot)

Closed issues: - LUH² (#217) - Masking/segmentating layer based on vector (#231) - Move documentation to VitePress (#245) - Restore the Fauxcurrences tutorial (#252) - Update the tutorial for future climate data (#254) - Additional method to interpolate when we already have the destination layer (#258) - Add fields to the SimpleSDMDatasets interface (#259)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - v0.1.1

SpeciesDistributionToolkit v0.1.1

Diff since v0.1.0

Merged pull requests: - semver(datasets): v0.2.1 (#250) (@tpoisot) - VitePress for the top level doc site (#251) (@tpoisot) - Cleanup tutorial + howto (#253) (@tpoisot) - Future climate tutorial update (#255) (@tpoisot) - Restore fauxcurrence page (#256) (@tpoisot) - Simplify the navbar (#257) (@tpoisot) - Add interpolate! (#260) (@tpoisot) - Add a tutorial on building the BIOCLIM model (#261) (@tpoisot) - Bug fix: source argument missing from interpolate (#262) (@tpoisot)

Closed issues: - Move documentation to VitePress (#245) - Restore the Fauxcurrences tutorial (#252) - Update the tutorial for future climate data (#254) - Additional method to interpolate when we already have the destination layer (#258)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.0.2

SimpleSDMLayers SimpleSDMLayers-v1.0.2

Diff since SimpleSDMLayers-v1.0.1

Merged pull requests: - Bug fix: source argument missing from interpolate (#262) (@tpoisot)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.0.1

SimpleSDMLayers SimpleSDMLayers-v1.0.1

Diff since SimpleSDMLayers-v1.0.0

Merged pull requests: - CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot]) - Github actions for documentation (#249) (@tpoisot) - semver(datasets): v0.2.1 (#250) (@tpoisot) - VitePress for the top level doc site (#251) (@tpoisot) - Cleanup tutorial + howto (#253) (@tpoisot) - Future climate tutorial update (#255) (@tpoisot) - Restore fauxcurrence page (#256) (@tpoisot) - Simplify the navbar (#257) (@tpoisot) - Add interpolate! (#260) (@tpoisot)

Closed issues: - Move documentation to VitePress (#245) - Restore the Fauxcurrences tutorial (#252) - Update the tutorial for future climate data (#254) - Additional method to interpolate when we already have the destination layer (#258)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMDatasets-v0.2.1

What's Changed

• Update README.md by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/247
• Fauxcurrences v0.2.0 by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/232
• CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) by @github-actions in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/248
• Github actions for documentation by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/249
• semver(datasets): v0.2.1 by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/250

Full Changelog: https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/compare/SimpleSDMDatasets-v0.2.0...SimpleSDMDatasets-v0.2.1

- Julia
Published by tpoisot over 1 year ago

SpeciesDistributionToolkit.jl - v0.1.0

SpeciesDistributionToolkit v0.1.0

Diff since v0.0.11

Merged pull requests: - Use CRS for SimpleSDMLayers (#227) (@tpoisot) - Fauxcurrences v0.2.0 (#232) (@tpoisot) - SimpleSDMDatasets v0.2.0 (#233) (@tpoisot) - SimpleSDMLayers v1.0.0 (#234) (@tpoisot) - Update TagBot.yml (#246) (@tpoisot) - Update README.md (#247) (@tpoisot) - CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot]) - Github actions for documentation (#249) (@tpoisot)

Closed issues: - ecoClimate - Climatic layers from PMIP3 CMIP5 (#33) - PaleoClim (#228)

- Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit.jl - Fauxcurrences-v0.2.0

What's Changed

• Update README.md by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/247
• Fauxcurrences v0.2.0 by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/232

Full Changelog: https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/compare/SimpleSDMDatasets-v0.2.0...Fauxcurrences-v0.2.0

- Julia
Published by tpoisot over 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMDatasets-v0.2.0

What's Changed

• Update TagBot.yml by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/246
• SimpleSDMDatasets v0.2.0 by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/233

Full Changelog: https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/compare/SimpleSDMLayers-v1.0.0...SimpleSDMDatasets-v0.2.0

- Julia
Published by tpoisot over 1 year ago

SpeciesDistributionToolkit.jl - SimpleSDMLayers-v1.0.0

What's Changed

• Use CRS for SimpleSDMLayers by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/227
• SimpleSDMLayers v1.0.0 by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/234

Full Changelog: https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/compare/v0.0.11...SimpleSDMLayers-v1.0.0

- Julia
Published by tpoisot over 1 year ago