ef_activities

Hands-on activities associated with the Ecological Forecasting book and graduate class

https://github.com/ecoforecast/ef_activities

Science Score: 36.0%

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    5 of 12 committers (41.7%) from academic institutions
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    Low similarity (7.2%) to scientific vocabulary

Keywords from Contributors

cyberinfrastructure data-assimilation ecosystem-model ecosystem-science meta-analysis national-science-foundation pecan plants
Last synced: 10 months ago · JSON representation

Repository

Hands-on activities associated with the Ecological Forecasting book and graduate class

Basic Info
  • Host: GitHub
  • Owner: EcoForecast
  • License: mit
  • Language: AGS Script
  • Default Branch: master
  • Size: 169 MB
Statistics
  • Stars: 89
  • Watchers: 7
  • Forks: 195
  • Open Issues: 1
  • Releases: 0
Created almost 12 years ago · Last pushed 12 months ago
Metadata Files
Readme License

README.md

EF_Activities

Hands-on activities associated with the Ecological Forecasting book and graduate class

Book: Dietze, M. 2017. Ecological Forecasting. Princeton University Press https://ecoforecast.org/book

List of activities by Chapter:

Chapter 1: Introduction

  • Exercise 01 - R primer

Chapter 2: From Models to Forecasts

  • Exercise 02 - From models to forecasts

Chapter 3: Data, Large and Small

  • Exercise 03 - Tools for working with data

Chapter 4: Scientific Workflows and the Informatics of Model-Data Fusion

  • Exercise 04 - Pair Coding and Github

Chapter 5: Introduction to Bayes

  • Exercise 05 - JAGS primer

  • Exercise 05B - Bayesian Regression

Chapter 6:Characterizing Uncertainty

  • Chapter 06 - Fitting Uncertainties

  • Chapter 06 - Hierarchical Bayes

Chapter 8: Latent Variables and State-Space Models

  • Exercise 06 - State Space models

Chapter 9: Fusing Data Sources

  • Exercise 07 - Fusing time-series data

Chapter 11: Propagating, Analyzing, and Reducing Uncertainty

  • Chapter 11 - Uncertainty Propagation and Analysis

Chapter 13: Data Assimilation 1: Analytical Methods

  • Exercise 09 - Kalman Filter

Chapter 14: Data Assimilation 2: Monte Carlo Methods

  • Exercise 10 - Particle Filter

Chapter 16: Assessing Model Performance

  • Exercise 11 - Model Assessment

Chapter 17: Projection and Decision Support

  • Exercise 12 - Decision Support

In addition this repository contains the following folders:

  • data - Data files used in the exercises
  • images - Image files embedded in the exercises
  • tutorial - Additional tutorials contributed by previous students

For a list of Git and Github tutorials see http://gist.github.com/Pakillo/63c15c700c9c76fe8032

Owner

  • Name: EcoForecast
  • Login: EcoForecast
  • Kind: organization

GitHub Events

Total
  • Watch event: 4
  • Push event: 1
  • Pull request event: 2
  • Fork event: 25
Last Year
  • Watch event: 4
  • Push event: 1
  • Pull request event: 2
  • Fork event: 25

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 173
  • Total Committers: 12
  • Avg Commits per committer: 14.417
  • Development Distribution Score (DDS): 0.133
Past Year
  • Commits: 4
  • Committers: 2
  • Avg Commits per committer: 2.0
  • Development Distribution Score (DDS): 0.25
Top Committers
Name Email Commits
Michael Dietze d****e@b****u 150
Paulo Arevalo p****o@b****u 6
Alexey Shiklomanov (LVM64) a****v@g****m 3
Kristina Riemer k****r@w****g 3
Alyssa Willson a****2@n****u 3
rqthomas r****s 2
kzarada k****8@g****m 1
jslingsby 1****y 1
Kathryn Wheeler k****l@b****u 1
Julie Jung j****2@g****m 1
Eric R. Scott s****r@g****m 1
Eric Bullock b****e@b****u 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 3
  • Total pull requests: 22
  • Average time to close issues: 8 days
  • Average time to close pull requests: about 1 month
  • Total issue authors: 2
  • Total pull request authors: 17
  • Average comments per issue: 2.67
  • Average comments per pull request: 0.64
  • Merged pull requests: 12
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • stineb (2)
  • lucialayr (1)
Pull Request Authors
  • parevalo (2)
  • bcow (2)
  • ashiklom (2)
  • bullocke (2)
  • KristinaRiemer (2)
  • rudeboybert (1)
  • Aariq (1)
  • jslingsby (1)
  • slladeau (1)
  • drjuliejung (1)
  • condontd (1)
  • andpineda (1)
  • kzarada (1)
  • rqthomas (1)
  • ejchua (1)
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Dependencies

DESCRIPTION cran
  • MCMCpack * depends
  • MODISTools * depends
  • RCurl * depends
  • XML * depends
  • coda * depends
  • devtools * depends
  • knitr * depends
  • mvtnorm * depends
  • ncdf4 * depends
  • rjags * depends
  • vioplot * depends