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land

Everything within the Land model (Soil Plant Atmosphere Module, Land Hydrology, etc)

https://github.com/clima/land

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 6 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 9 committers (22.2%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (16.0%) to scientific vocabulary

Keywords

canopy fluorescence julia land-surface-model sif soil-plant-atmosphere

Keywords from Contributors

pde interpretability standardization animal hack autograder symbolic-computation report
Last synced: 6 months ago · JSON representation

Repository

Everything within the Land model (Soil Plant Atmosphere Module, Land Hydrology, etc)

Basic Info
Statistics
  • Stars: 104
  • Watchers: 13
  • Forks: 21
  • Open Issues: 9
  • Releases: 4
Topics
canopy fluorescence julia land-surface-model sif soil-plant-atmosphere
Created almost 7 years ago · Last pushed about 2 years ago
Metadata Files
Readme License

README.md

CliMA Land

About

CliMA Land is a next generation Land Surface Model (LSM) designed to use the broadly available remote sensing data as well as ground-based flux measurements. CliMA Land is a highly modular platform to promote research at different scales from tissue to organ, whole plant, and ecosystem. Therefore, we deliver CliMA Land via a patch of packages (also referred to as sub-modules) to reduce the time used to initialize a research project. As a result, the repository is more a collection of tutorials and examples for users, rather than a place to store the code for all sub-modules.

This project is supposed to be a community effort, leveraging all the work that has been done in Land Surface Modeling from various groups around the world. The ultimate goal is to build a bio-physical model that represents the state of the art and can be coupled to the CliMA Earth System Model (ESM), i.e. Caltech's CliMA initiative. The CliMA Land can be customized to represent Soil-Plant-Air-Continuum (SPAC) with different complexities, e.g. multi-layer soil and canopy properties and "observables" that can be used as constraint: - Solar Induced Chlorophyll Fluorescence (SIF) on the leaf-level propagated through the canopy; - Reflectance at various bands as measured from space; - Soil and vegetation moisture content.

A specific focus of CliMA Land will be on water-carbon feedbacks by testing recent developments in optimization theories as well as plant physiology. We will try to implement latest adhere to some coding structure developed by Gordan Bonan but implement parts from other programs, such as SCOPE.

The entire model will be written in Julia (Julia: "Looks like Python, feels like Lisp, runs like Fortran"), which should make the barrier of entry lower for incoming students, PostDocs, etc). If you want to contribute, please contact us (cfranken@caltech.edu).

Fluorescence from Space

Land model

||| |:-------------------|:--------------------------------------------| | Docs Build | docs build | | Documentation | dev | | Unit Test | unit test | | Code Coverage | codecov | | Bors | Bors enabled | |||

Examples

Run CliMA Land for a single site (v0.1)

See https://github.com/CliMA/Land/tree/v0.1 for examples of CliMA Land v0.1.

References

Please cite the following when you use the CliMA Land (v0.1)

General model description

Y. Wang, P. Köhler, L. He, R. K. Braghiere, R. Doughty, J. Wood, C. Frankenberg. 2021. Testing stomatal models at the stand level in deciduous angiosperm and evergreen gymnosperm forests using CliMA Land (v0.1). Geoscientific Model Development. 14(11): 6741-6763. DOI PDF SI CODE

@article{wang2021testing, author = {Wang, Y. and K{\"o}hler, P. and He, L. and Doughty, R. and Braghiere, R. K. and Wood, J. D. and Frankenberg, C.}, year = {2021}, title = {Testing stomatal models at the stand level in deciduous angiosperm and evergreen gymnosperm forests using CliMA Land (v0.1)}, journal = {Geoscientific Model Development}, volume = {14}, number = {11}, pages = {6741--6763} }

Clumping index implementation

R. K. Braghiere, Y. Wang, R. Doughty, D. Souza, T. Magney, J. Widlowski, M. Longo, A. Bloom, J. Worden, P. Gentine, and C. Frankenberg. 2021. Accounting for canopy structure improves hyperspectral radiative transfer and sun-induced chlorophyll fluorescence representations in a new generation Earth System model. Remote Sensing of Environment. 261: 112497. DOI PDF SI CODE

@article{braghiere2021accounting, author = {Braghiere, Renato K and Wang, Yujie and Doughty, Russell and Sousa, Daniel and Magney, Troy and Widlowski, Jean-Luc and Longo, Marcos and Bloom, A Anthony and Worden, John and Gentine, Pierre and Frankenberg, Christian}, year = {2021}, title = {Accounting for canopy structure improves hyperspectral radiative transfer and sun-induced chlorophyll fluorescence representations in a new generation Earth System model}, journal = {Remote Sensing of Environment}, volume = {261}, pages = {112497} }

Canopy complexity

Y. Wang, C. Frankenberg. 2022. On the impact of canopy model complexity on simulated carbon, water, and solar-induced chlorophyll fluorescence fluxes. Biogeosciences. 19(1): 29-45. DOI PDF CODE

@article{wang2022impact, author = {Wang, Y. and Frankenberg, C.}, year = {2022}, title = {On the impact of canopy model complexity on simulated carbon, water, and solar-induced chlorophyll fluorescence fluxes}, journal = {Biogeosciences}, volume = {19}, number = {1}, pages = {29--45} }

Owner

  • Name: Climate Modeling Alliance
  • Login: CliMA
  • Kind: organization
  • Email: clima@caltech.edu

An alliance of scientists, engineers and applied mathematicians, dedicated to pioneering a new, data-informed approach to climate modeling

GitHub Events

Total
  • Issues event: 1
  • Watch event: 8
  • Issue comment event: 2
  • Fork event: 2
Last Year
  • Issues event: 1
  • Watch event: 8
  • Issue comment event: 2
  • Fork event: 2

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 1,266
  • Total Committers: 9
  • Avg Commits per committer: 140.667
  • Development Distribution Score (DDS): 0.125
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Yujie Wang j****r@g****m 1,108
Christian Frankenberg f****e@g****m 115
braghiere r****e@g****m 18
Christian Frankenberg c****n@t****u 7
Charles Kawczynski k****s@g****m 7
Christian Frankenberg c****n@f****u 4
github-actions[bot] 4****] 4
Debsunder Dutta d****a@C****l 2
debsunder d****a@g****m 1
Committer Domains (Top 20 + Academic)
fluo.gps.caltech.edu: 1 tofu.gps.caltech.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 19
  • Total pull requests: 45
  • Average time to close issues: 8 months
  • Average time to close pull requests: 7 days
  • Total issue authors: 12
  • Total pull request authors: 5
  • Average comments per issue: 1.53
  • Average comments per pull request: 2.64
  • Merged pull requests: 33
  • Bot issues: 0
  • Bot pull requests: 7
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 3.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • cfranken (3)
  • Yujie-W (3)
  • charleskawczynski (3)
  • waywardpidgeon (2)
  • bishtgautam (1)
  • MitraAMitra (1)
  • Rohanms444 (1)
  • manmeet3591 (1)
  • YunanLin97 (1)
  • rafaqz (1)
  • relghawi (1)
  • zmoon (1)
Pull Request Authors
  • Yujie-W (19)
  • cfranken (12)
  • github-actions[bot] (7)
  • braghiere (5)
  • charleskawczynski (3)
Top Labels
Issue Labels
documentation (1) ClimaParameters :control_knobs: (1)
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads: unknown
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 0
    (may contain duplicates)
  • Total versions: 2
proxy.golang.org: github.com/clima/land
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 7.0%
Average: 8.2%
Dependent repos count: 9.3%
Last synced: 6 months ago
proxy.golang.org: github.com/CliMA/Land
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 7.0%
Average: 8.2%
Dependent repos count: 9.3%
Last synced: 6 months ago

Dependencies

.github/workflows/CompatHelper.yml actions
  • actions/checkout v1 composite
  • julia-actions/setup-julia v1 composite
.github/workflows/Documentation.yml actions
  • actions/checkout v1 composite
  • julia-actions/setup-julia v1 composite
.github/workflows/Julia-1.6.yml actions
  • actions/checkout v1 composite
  • julia-actions/julia-runtest latest composite
  • julia-actions/setup-julia v1 composite
.github/workflows/JuliaStable.yml actions
  • actions/checkout v1 composite
  • codecov/codecov-action v1 composite
  • julia-actions/julia-processcoverage v1 composite
  • julia-actions/julia-runtest latest composite
  • julia-actions/setup-julia v1 composite
.github/workflows/TagBot.yml actions
  • JuliaRegistries/TagBot v1 composite