Recent Releases of MAPL

MAPL - MAPL 2.59.0

This release of MAPL has some fixes, the most important of which is a fix to stretched grid attributes in ExtData (note: not ExtData2G), see https://github.com/GEOS-ESM/MAPL/pull/3926. This mainly affects our GCHP colleagues.

This release also fixed issues with 0d string handling in pfio.

All tests with GEOSgcm show this to be zero-diff to MAPL 2.58

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.33.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.8.1 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.15.2
- gFTL-shared 1.10.0
- pFUnit 4.11.1 (optional)
- fArgParse 1.9.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.16.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.62.1

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

Fixed 0d string reading and writing
Minor bug fix in pfio test_prefetch_data test
Fixed stretched grid target lat/lon unit conversion in ExtData
Fix a typo in trajectory sampler

Added

Added tests to read and write 0d and 1d string to and from netcdf files

What's Changed

Fix a typo in trajectory sampler by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/3861
Auto GitFlow - main → develop by @github-actions[bot] in https://github.com/GEOS-ESM/MAPL/pull/3895
add tests for string IO by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3876
Fixes #3905: fix 0d string read and write by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3908
v2: Fix minor bug in Test_Client.pf by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3916
Fix incorrect unit conversion for target lat/lon in ExtData by @lizziel in https://github.com/GEOS-ESM/MAPL/pull/3926
Revert to old CS Factory interface keywords to avoid API change by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3941
Prepare for MAPL 2.59.0 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3954
GitFlow: Merge develop into main for 2.59 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3956

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.58.1...v2.59.0

- Fortran
Published by mathomp4 8 months ago

MAPL - MAPL 2.58.1

This is a patch release of MAPL 2.58. It fixes a bug preventing compilation by NAG Fortran.

This release also prettyfies the wall clock print introduced in MAPL 2.58.0.

Zero-diff to MAPL 2.58.0

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.33.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.8.1 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.15.2
- gFTL-shared 1.10.0
- pFUnit 4.11.1 (optional)
- fArgParse 1.9.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.16.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.62.1

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

Fixed typo in wallclock print

Changed

Updated wallclock print to be more readable: Wallclock: 2025/07/17 20:02

What's Changed

Fixes #3893. Fix for Wallclock print by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3894

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.58.0...v2.58.1

- Fortran
Published by mathomp4 9 months ago

MAPL - MAPL 2.58.0

This release of MAPL is mainly for additions to the per-step timer output to also display the walldate and time: GCM Date: 2000/04/14 Time: 21:07:30 Throughput(days/day)[Avg Tot Run]: 36.8 36.8 36.9 TimeRemaining(Est) 000:01:25 0.0% : 0.0% Mem Comm:Used ; 20250717 20:02 At the end is: 20250717 20:02 This will be useful for letting users know when the model was running to allow for better interfacing with computing centers when looking at issues/profiling.

All tests show this is zero-diff to MAPL 2.57

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.33.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.8.1 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.15.2
- gFTL-shared 1.10.0
- pFUnit 4.11.1 (optional)
- fArgParse 1.9.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.16.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.62.1

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

Fix some incorrect links in the documentation

Added

Add new markup link checker based on mlc

Changed

Added RC for Timer call in MAPL_Generic.F90
Adds the wall clock date and time to the GCM stdout log so we can more readily diagnose slow periods of performance during the run

What's Changed

Added RC for Timer call in MAPL_Generic.F90 by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3837
Add markup link checker by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3853
Bump becheran/mlc from 0.22.0 to 1.0.0 by @dependabot[bot] in https://github.com/GEOS-ESM/MAPL/pull/3858
Feature/wmputman/lm v12rc14 wmp by @wmputman in https://github.com/GEOS-ESM/MAPL/pull/3877
Prepare for MAPL 2.58.0 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3880
GitFlow: Merge develop into main for 2.58 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3881

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.57.0...v2.58.0

- Fortran
Published by mathomp4 9 months ago

MAPL - MAPL 2.57.0

This version of MAPL has many new features including:

Added a new EASE Grid Factory (based on code previously in GEOSgcm_GridComp)
Added new option to History, if you specify xlevels instead of levels, it will perform extrapolation below the surface, using ECMWF formulas for height and temperature, otherwise use lowest model level
Added _USERRC macro for use with ESMF commands that return both rc and userrc
Added new option for raw_bw.x to use netcdf rather than binary
Various updates for the trajectory samplers

NOTE: There is one change that can affect some diagnostic prints made by MAPL. The per-step diagnostic print was changed from being hardcoded as AGCM Date to now trigger off of the ROOT_NAME in CAP.rc. So, if ROOT_NAME is GEOSldas, the print will be GEOSldas Date instead of AGCM Date.

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.33.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.8.1 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.15.2
- gFTL-shared 1.10.0
- pFUnit 4.11.1 (optional)
- fArgParse 1.9.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.16.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.62.1

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

StateFilterItem => MAPL_StateFilterItem in ACG
Fix binary writes and reads in benchmark simulators
Removed _HERE macros left in ExtDataGridCompNG.F90 from debugging

Added

Added functions to read and write 0d string to nc4 file.
Added EASE grid Factory so the regridder can use it easily
- NOTE: The public EASE routines moved to MAPL have been prefixed with MAPL_. This allows older versions of GEOSgcm_GridComp to use MAPL 2.57+ but have the old routines
Added new option to History, if you specify xlevels instead of levels, it will perform extrapolation below the surface, using ECMWF formulas for height and temperature, otherwise use lowest model level
Added _USERRC macro for use with ESMF commands that return both rc and userrc
Added new option for raw_bw.x to use netcdf rather than binary
Swapped order of output dimensions for trajectory and mask samplers. Now the leading dimension (Fortran convention) is level.

Changed

Changed per-step diagnostic print from being hardcoded as AGCM Date to now trigger off of the ROOT_NAME in CAP.rc. So, if ROOT_NAME is GEOSldas, the print will be GEOSldas Date instead of AGCM Date.
Update the MAPL_EQsat code to the ramping version from CVS
Add schema.version: 1 to enable trajectory sampler using a single GRID_LABEL item
index_var_names keyword is introduced to simpify the specifications for IODA files
delete obsfile_end_time in trajectory sampler
change geoval_fields to fields in obs_platform
change sampler_spec to sampler_type

What's Changed

StateFilterItem => MAPL_StateFilterItem in ACG by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/3757
Add _USERRC macro from MAPL3, update readmes by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3759
Merge develop into main to get readmes onto main by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3766
Feature/bmauer/below surf extrapolation ecmwf by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3764
fixes #3769 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3770
Fixes #3778 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3779
Fix up Spack CI by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3790
Introduce schema.version option for trajectory sampler by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/3594
Fix binary writes/reads in simulators by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3795
Add writeLZfirst option to sampler code by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/3794
Update MAPL_EQsat to ramping version by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3748
fixes #3802 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3803
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3809
Add EASE grid by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3698
Fix Ford readme by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3811
Generalize per-step profiling print by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3788
Feature/bmauer/raw netcdf for hoot by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3808
Feature/wjiang/add 0d string nc by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3785
Convert system() call for NAG by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3818
Prefix public EASE routines with MAPL_ by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3824
Merge develop into main for 2.57 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3826

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.56.1...v2.57.0

- Fortran
Published by mathomp4 10 months ago

MAPL - MAPL 2.56.1

This is a patch on MAPL 2.56 which fixes an issue so that if ExtData cannot find a file and fail on missing is false, just set collection to /dev/null. This is mainly an issue with GAAS runs of GEOSgcm and most users would not encounter it.

All tests show this is zero-diff to MAPL 2.56.0

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.33.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.8.1 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.15.2
- gFTL-shared 1.10.0
- pFUnit 4.11.1 (optional)
- fArgParse 1.9.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.16.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.62.1

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

Fixed issue so that if ExtData cannot find a file and fail on missing is false, just set collection to /dev/null

What's Changed

Fix up MAPL Docs generation by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3750
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3751
Feature/bmauer/fixes #3752 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3753
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3754

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.56.0...v2.56.1

- Fortran
Published by mathomp4 10 months ago

MAPL - MAPL 2.56.0

This is a minor release of MAPL 2. This has many updates and fixes. Among the notable changes are:

Fixes to sampler output
Fixed uninitialized num_levels bug causing gcc14 to crash a node due to allocating enormous amount of memory
Fix for GNU + MVAPICH 4 disabling ieee halting around MPI_Init_thread()
Added a new StateFilterItem funtion to apply a mask or extra using a combination of variables from a state and return an array with the result, can specify default
Implemented a new feature in to allow users to select the appropriate ESMF_PIN values. Users control this via CAP.rc and the choices are:
- ESMF_PINFLAG: PET --> ESMF_PIN_DE_TO_PET
- ESMF_PINFLAG: VAS --> ESMF_PIN_DE_TO_VAS
- ESMF_PINFLAG: SSI --> ESMF_PIN_DE_TO_SSI
- ESMF_PINFLAG: SSI_CONTIG --> ESMF_PIN_DE_TO_SSI_CONTIG (default with no setting)
Added a new column to the ACG (MAPL2), FILTER, which generates declarations and allocations of arrays (StateFilterItem)

All testing with GEOS shows this to be zero-diff to MAPL 2.55

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.33.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.8.1 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.15.2
- gFTL-shared 1.10.0
- pFUnit 4.11.1 (optional)
- fArgParse 1.9.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.16.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.62.1

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

Fixed sampler history output
Fixed bug with dervied exports in ExtData in filter function
define comp_name in MAPL_GridCreate when GC is not present
Fixed bug in profiler demo
Fixed uninitialized num_levels bug causing gcc14 to crash a node due to allocating enormous amount of memory
Fix for GNU + MVAPICH 4 disabling ieee halting around MPI_Init_thread()
Test if GridCornerLons: and GridCornerLats: attributes are present before removing
Fixed ExtData bug causing time interpolation to be skipped if no current reads

Added

Added logging prints for MAPL_read_bundle
Added a new StateFilterItem funtion to apply a mask or extra using a combination of variables from a state and return an array with the result, can specify default
Implemented a new feature in to allow users to select the appropriate ESMF_PIN values. Users control this via CAP.rc and the choices are:
- ESMF_PINFLAG: PET --> ESMF_PIN_DE_TO_PET
- ESMF_PINFLAG: VAS --> ESMF_PIN_DE_TO_VAS
- ESMF_PINFLAG: SSI --> ESMF_PIN_DE_TO_SSI
- ESMF_PINFLAG: SSI_CONTIG --> ESMF_PIN_DE_TO_SSI_CONTIG (default with no setting)
Added a new column to the ACG (MAPL2), FILTER, which generates declarations and allocations of arrays (StateFilterItem)
Add BUILD_INFO.rc file that contains build info filled in by CMake

Changed

Update components.yaml
- ESMA_env v4.38.0
- Update to Baselibs 7.33.0
  - ESMF 8.8.1 (needed for MAPL3)
  - Fixes for CMake 4
- Cache ENVIRONMENT_MODULES
- ESMA_cmake v3.62.1
- Fix for XCode 16.3
- Fixes for f2py with MPT
- Fixes for f2py on various machines
- Cache proc_description
- Support for ecbuild updates
- Enforce our allowed CMAKE_BUILD_TYPE
Update documentation on ACG in repo
Update CI to use ifx 2025.1
Update Tests to ExtData1G tests are ESSENTIAL and run by default again

What's Changed

Update ESMA_cmake to v3.58.2 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3640
Fix bug in profiler demo by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3626
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3643
Update CI to use Baselibs 7.33.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3663
Feature/wdboggs/update acg documentation by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/3660
Feature/bmauer/fixes #3634 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3662
Update to use Baselibs 7.33.0 by default by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3665
avoid using undefined compname in MAPLGridCreate when gc is not present by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3661
Fixed #3624. Add logger print to MAPLreadbundle by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3625
Update to use ifx 2025.1 in CI by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3688
Port ESMF_PINFLAG change from 2.53 work into develop by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3677
Fix issue with GNU and MVAPICH 4 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3709
fixes #3710 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3715
Fixed: added missing initialization for num_levels by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/3713
Fix NAG issue with StateMasking by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3717
Fix for unneeded AttributeRemove by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3719
fixes #3722 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3723
Add FILTER column to ACG for StateItemFilter by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/3727
Fix ExtData bug causing time interpolation to be skipped by @lizziel in https://github.com/GEOS-ESM/MAPL/pull/3734
Turn extdat1g tests back on by default by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3739
fixed sampler output by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3707
v2: Update ESMAenv and ESMAcmake by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3736
Prepare for MAPL 2.56.0 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3740
GitFlow: Merge Develop into Main for 2.56 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3742
Add DeepWiki Badge by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3706

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.55.1...v2.56.0

- Fortran
Published by mathomp4 10 months ago

MAPL - MAPL 2.53.4

This release of MAPL 2.53 has a fix to correct some ESMF Errors encountered by our UFS colleagues (see https://github.com/ufs-community/ufs-weather-model/issues/1888). We now check first if an ESMF Attribute exists before attempting to remove it.

Testing shows this is zero-diff to MAPL 2.53.3

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

Test if GridCornerLons: and GridCornerLats: attributes are present before removing

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.53.3...v2.53.4

- Fortran
Published by mathomp4 11 months ago

MAPL - MAPL 2.53.3

This release of MAPL 2.53 adds the ability to set the ESMF_PIN setting via CAP.rc. The allowed settings are: - ESMF_PINFLAG: PET --> ESMF_PIN_DE_TO_PET - ESMF_PINFLAG: VAS --> ESMF_PIN_DE_TO_VAS - ESMF_PINFLAG: SSI --> ESMF_PIN_DE_TO_SSI - ESMF_PINFLAG: SSI_CONTIG --> ESMF_PIN_DE_TO_SSI_CONTIG

The default (to match default behavior in v2.53.2) is SSI_CONTIG and if nothing is set in CAP.rc this will be used.

This was needed for our UFS collaborators who found SSI_CONTIG led to run time issues.

All testing shows this is zero-diff to v2.53.2

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Added

Implemented a new feature in to allow users to select the appropriate ESMF_PIN values. Users control this via CAP.rc and the choices are:
- ESMF_PINFLAG: PET --> ESMF_PIN_DE_TO_PET
- ESMF_PINFLAG: VAS --> ESMF_PIN_DE_TO_VAS
- ESMF_PINFLAG: SSI --> ESMF_PIN_DE_TO_SSI
- ESMF_PINFLAG: SSI_CONTIG --> ESMF_PIN_DE_TO_SSI_CONTIG

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.53.2...v2.53.3

- Fortran
Published by mathomp4 11 months ago

MAPL - MAPL 2.55.1

This is a patch release of MAPL 2.55 which renames a module for conservative vertical regridding code so as to not conflict so an external module. It also adds a few error traps in ExtData when processing vertical coordinate for use in regridding

Testing shows zero-diff to MAPL 2.55.0

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.32.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.8.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.15.2
- gFTL-shared 1.10.0
- pFUnit 4.11.1 (optional)
- fArgParse 1.9.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.16.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.58.1

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

Renamed module for convervative vertical regridding code so as to not conflict so an external module

Added

Added a few error traps in ExtData when processing veritcal coordinate for use in regridding

What's Changed

fixes #3636 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3642

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.55.0...v2.55.1

- Fortran
Published by mathomp4 11 months ago

MAPL - MAPL 2.55.0

This release of MAPL has many new fixes and updates. Among the updates are:

Ability to read and write nc4 tile files
Preliminary capabilities for online vertical remapping in ExtData2G
Updates to CI

And the highlights of fixes include:

Fixed problem in History when no fields appear on the fields: line in a collection (issue #3525)
Relaxed the MPI thread levels to MPI_THREAD_SERIALIZED required by ESMF

All testing shows MAPL 2.55 is zero-diff to MAPL 2.54

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.32.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.8.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.15.2
- gFTL-shared 1.10.0
- pFUnit 4.11.1 (optional)
- fArgParse 1.9.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.16.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.58.1

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

Fixed problem related to stale pointers to temp copies of dummy arguments in MAPL_Cap.F90. Fix is to add TARGET attribute in select locations.
Fix for case where 2nd argument to transfer() was not allocated in the OpenMP support layer. Was not detected by other compilers. The fix is to use a literal integer array instead.
Fixed problem in History when no fields appear on the fields: line in a collection (issue #3525)
Fixed bug that broke SCM model in GEOS
Fix ExtData2G unit test for GNU on Discover
Fixed nesting of internal timers (issue #3412)
Fixed issue of make tests not building all needed executables
Incorrect specification of EOL for Darwin+NAG in MAPL_Config.
Untrapped exceptions in MAPL_LatLonGridFactory.F90

Added

Added subroutine to write nc4 tile file
Added new supported units for vertical regridding in ExtData, now supports kg kg-1, mol mol-1, kg m-2 as well as per second variations of these, i.e. kg kg-1 s-1
Added CI build using spack
Added Release build CI tests for MAPL
Added new option to rule for ExtData2G to disable vertical regridding, default is true, vertical regridding is disabled
Added experimental capabiltiy to regrid from constituents in volume mixing, mass mixing, emissions units from one set of hybrid sigma levels to model levels in ExtData2G
Added subdirectory GetHorzIJIndex in the Tests directory for testing subroutine MAPL_GetHorzIJIndex to ensure the subroutine fails is the cubed-sphere assumption is violated and also if the returned I and J indices are not correct.

Changed

Changed ExtData keyword disable_vertical_regridding (default true) to enable_vertical_regridding (default false)
Relaxed the MPI thread levels to MPI_THREAD_SERIALIZED required by ESMF
Update components.yaml
- ESMA_env v4.36.0
- Update to Baselibs 7.32.0 (gFTL v1.15.2 needed for MAPL3 work)
- Remove SLES12 at NCCS, update to GEOSpyD 24.11.3
- ESMA_cmake v3.58.1
- Remove SLES12 at NCCS, update f2py detection, update ifx flags
- Clean up GCC 10+ warnings
Update .editorconfig for Fortran files enforcing 3-space indents and line length of 132
Migrated much of the CI to GitHub Actions

What's Changed

Fixed nesting of internal timers (see also commit by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/3414
Bump devops-infra/action-pull-request from 0.5.5 to 0.6.0 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/3409
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3424
Update to Baselibs 7.32.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3425
Test get horz ij index by @aoloso in https://github.com/GEOS-ESM/MAPL/pull/3401
Feature/bmauer/identify vertical coord extdata2g by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3434
Fixes #3436 - Changes to get the tests for GetHorzIJIndex to pass on NAG by @aoloso in https://github.com/GEOS-ESM/MAPL/pull/3463
Feature/bmauer/fixes #3442 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3466
Update editorconfig for Fortran by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3427
Fixes #3443. Add execs to build-tests target by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3444
Update the documentation for the automatic code generator by @JulesKouatchou in https://github.com/GEOS-ESM/MAPL/pull/3447
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3471
Use O-server for MAPL sampler codes: Mask sampler (part 1) by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/3395
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3489
relax mpi thread levels by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3493
Add Release build MAPL Tests by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3337
Fix for ExtData2G unit test on discover GNU by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3347
Fixes #3505 - uncaught exceptions by @tclune in https://github.com/GEOS-ESM/MAPL/pull/3506
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3510
Add Spack CI GCC test by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3298
Fixes #3518 by @tclune in https://github.com/GEOS-ESM/MAPL/pull/3519
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3520
Fixes #3525. by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/3526
Update Spack CI MAPL Develop action, Add Spack CI GCC Test by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3537
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3543
Feature/bmauer/volume mixing regridding by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3546
remove some comments and change keyword from negative to positive by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3560
fixes #3562 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3563
Feature/bmauer/fixes #3571 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3572
More cleanup for MAPL CI by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3580
Update components and INSTALL.md by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3517
Add a subroutine to write a nc4 tile file by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3531
Directories with 'Plug' in name are also components by @pchakraborty in https://github.com/GEOS-ESM/MAPL/pull/3596
Prepare for MAPL 2.55.0 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3599
GitFlow: Merge develop into main for 2.55 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3602

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.54.2...v2.55.0

- Fortran
Published by mathomp4 12 months ago

MAPL - MAPL 2.53.2

This is a patch release on MAPL 2.53 that better expresses the MPI Thread level requirements for MAPL. Per discussion with ESMF, it was found that the minimum threading level is MPI_THREAD_SERIALIZED

All tests with GEOS show this to be zero-diff.

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Changed

Relaxed the MPI thread levels to MPITHREADSERIALIZED required by ESMF

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.53.1...v2.53.2

- Fortran
Published by mathomp4 about 1 year ago

MAPL - MAPL 2.54.2

This release of MAPL 2.54 fixes a bug identified by NAG when processing history collection list.

Tests show it is zero-diff to MAPL 2.54.1

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

[2.54.2] - 2025-03-18

Fixed

Fixed bug when processing history collection list identified by NAG

What's Changed

v2: Try to fix docs by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3419
Add scheduled builds of MAPL with ESMF develop by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3470
fixes #3485 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3486

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.54.1...v2.54.2

- Fortran
Published by mathomp4 about 1 year ago

MAPL - MAPL 2.54.1

This is a patch on MAPL 2.54 which fixes a typo in the automatic code generator

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

[2.54.1] - 2025-02-07

Fix typo in ACG: 'numsubtitles' => 'numsubtiles'

What's Changed

Typo ACG typo: 'numsubtitles' => 'numsubtiles' - Mais non! by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/3396
GitFlow: Merge develop into main for 2.54.1 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3399

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.54.0...v2.54.1

- Fortran
Published by mathomp4 about 1 year ago

MAPL - MAPL 2.54.0

This version of MAPL adds a new "column" to the automatic code generator (ACG), ALIAS, that allows a user to set a pointer variable to a different name. This prevents collisions between, say, import and export pointers.

All testing shows this to be zero-diff to MAPL 2.53

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Changed

Add column for ACG (ALIAS) that set the pointer variable to a different name than the short_name
Updated CI to use Baselibs 7.31.0
- Updates to GFE v1.18.0

What's Changed

Add ALIAS column to ACG StateSpec files by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/3379
v2: Update CI with Baselibs 7.31.0 (GFE v1.18.0) by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3386
Prepare for 2.54.0 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3391
GitFlow: Merge develop into main for 2.54 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3394

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.53.1...v2.54.0

- Fortran
Published by mathomp4 about 1 year ago

MAPL - MAPL 2.53.1

This is a patch on MAPL 2.53 which fixed a rare case where runs could deadlock in MAPL_GetHorzijIndex. Most users would not encounter this issue.

All tests show it zero-diff to MAPL 2.53.0

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

Fixed bug with MAPL_GetHorzijIndex when not points are passed on a processor causing a deadlock

What's Changed

fixes #3369 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3370
Prepare for 2.53.1 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3372

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.53.0...v2.53.1

- Fortran
Published by mathomp4 about 1 year ago

MAPL - MAPL 2.53.0

This release of MAPL has a bugfix for an issue discovered by our UFS users. Namely, it fixes a bug when MAPL is used with OpenMP in a certain way such that the correct dimensions for the MPI subdomain could be retrieved from the subgrids where ever needed.

It also updates ExtData so that if files are missing in a sequence the last value will be persisted if one has not chosen exact option

All testing with GEOSgcm shows this to be zero-diff.

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Changed

Updated ExtData so that if files are missing in a sequence the last value will be perisisted if one has not chosen exact option
Update components.yaml
- ESMA_env v4.34.1
- Fix GEOSpyD module on GMAO Desktops

Fixed

Changes were made to add attributes to the subgrids (i.e. created by dividing the MPI subdomain into smaller subdomains equal to the number of OpenMP threads) such that the correct dimensions for the MPI subdomain could be retrieved from the subgrids where ever needed.

What's Changed

Feature/bmauer/fixes #3338 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3351
Remove a print from last commit by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3356
Changes to return correct dimensions for the MPI grid from the OpenMP subgrids by @aoloso in https://github.com/GEOS-ESM/MAPL/pull/3350
Update to ESMA_env v4.34.1 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3355
Prepare for 2.53.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3362
GitFlow: Merge develop into main for 2.53 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3363

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.52.0...v2.53.0

- Fortran
Published by mathomp4 about 1 year ago

MAPL - MAPL 2.52.0

This release of MAPL has many new features and fixes over MAPL 2.52.

Among the new features are:

Added the ability to read netCDF tile files
Added a new optional start_date and start_time to control the output window for each History collection. No output will be written before then. If not specified, these default to the beginning of the experiment.
Added loggers when writing or reading weight files
Added new option to AGCM.rc overwrite_checkpoint to allow checkpoint files to be overwritten. By default still will not overwrite checkpoints
The trajectory sampler netCDF output variable location_index_in_iodafile can be turned off, after we add two control variables: use_NWP_1_file and restore_2_obs_vector for users. When set to true, the two options will select only one obs file at each Epoch interval, and will rotate the output field index back to the location vector inthe obs file before generating netCDF output.
Support splitfield: 1 in HISTORY.rc for trajectory sampler

The fixes include better freeing of MPI communicators (which were accumulating during long runs) and better behavior of calls when NaNs are present.

All testing with GEOS shows this is zero-diff to MAPL 2.51

NOTE: Below you'll see that we are now generally testing MAPL (in CI) with ESMF 8.8.0. At the moment, ESMF 8.8.0 is not required for MAPL 2. It is a requirement for MAPL 3 but we have not yet added any use of ESMF 8.8 specific features in MAPL 2.

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Added

Added subroutine to read nc4 tile file
Added optional start_date and start_time to control the output window for each History collection. No output will be written before then. If not specified, these default to the beginning of the experiment.
Added utility to prepare inputs for ExtDataDriver.x so that ExtData can simulate a real GEOS run
Added loggers when writing or reading weight files
Added new option to AGCM.rc overwrite_checkpoint to allow checkpoint files to be overwritten. By default still will not overwrite checkpoints
The trajectory sampler netCDF output variable location_index_in_iodafile can be turned off, after we add two control variables: use_NWP_1_file and restore_2_obs_vector for users. When set to true, the two options will select only one obs file at each Epoch interval, and will rotate the output field index back to the location vector inthe obs file before generating netCDF output.
Support splitfield: 1 in HISTORY.rc for trajectory sampler

Changed

Changed MAPL_ESMFRegridder to require the dstMaskValues to be added as grid attribute to use fixed masking, fixes UFS issue
Increased formatting width of time index in ExtData2G diagnostic print
Updated GitHub checkout action to use blobless clones
Update CI to use Baselibs 7.29.0 by default
- This provides ESMF 8.8.0
Update components.yaml
- ESMA_env v4.34.0
- Update to MPT 2.30 at NAS
- Update to Baselibs 7.29.0 (ESMF 8.8.0)
- ESMA_cmake v3.56.0
- Use LOCATION Python FIND_STRATEGY

Fixed

Free MPI communicators after reading and/or writing of restarts
Fixed the behavior of MAPL_MaxMin in presence of NaN
Fixed bug with return codes and macros in udunits2f

What's Changed

Add loggers when reading and writing weights by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3233
fixes #3242 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3243
Fix udsystem bug with macros and return codes by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/3258
Remove comments in UDSystem.F90 by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/3260
fixes #3262 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3269
Feature/bmauer/geos simulator by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3282
Feature/atrayano/history start stop by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/3278
fixes #3280 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3281
Updates for Ford docs by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3285
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3287
Bugfix/atrayano/maxmin support for nan by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/3290
Properly freeing MPI communicators after reading or writing restarts by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/3303
Bugfix/atrayano/fix of mpi comm free fix by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/3310
Added protection for null mpi communicator by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/3316
Update GitHub Actions to use blobless clones by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3318
Trajectory sampler: use a single obs file at each Epoch time and restore obs location for output by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/3326
Added subroutine to read NC4 tile file by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3321
Move to use Baselibs 7.29.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3327
fixed kind=8 by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3340
Prepare for 2.52.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3335
GitFlow: Merge Develop Into Main for 2.52 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3346

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.51.2...v2.52.0

- Fortran
Published by mathomp4 about 1 year ago

MAPL - MAPL 2.47.1.3

This is a tweak patch on top of MAPL 2.47.1.2. This adds the ability to add an option in AGCM.rc to allow MAPL to overwrite checkpoints: overwrite_checkpoints: .true. as requested in https://github.com/GEOS-ESM/MAPL/issues/3262.

By default, the capability is default .false which matches current MAPL behavior.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.13 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.46.0

We recommend most external users set -DUSE_F2PY=OFF

From CHANGELOG.md

Changed

Added new option to AGCM.rc overwrite_checkpoint to allow checkpoint files to be overwritten. By default still will not overwrite checkpoints

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.47.1.2...v2.47.1.3

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.51.2

This patch release of MAPL 2.51 has a fix when using multiple rules for a vector item in ExtData2G. It also relaxes a restriction that vector regridding in ExtData2G must be bilinear.

This release also moves the CI and Docker to us Ubuntu 24-based base images. This also required a fix in one of the profiler unit tests.

All testing shows this to be zero-diff to v2.51.1

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Changed

Removed restriction that vector regridding in ExtData2G must be bilinear
Update CI to use Ubuntu 24 images

Fixed

Fixed by when using multiple rules for a vector item in ExtData2G
Fix profiler ExclusiveColumn test for GCC 14

What's Changed

fixes #3255 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3256

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.51.1...v2.51.2

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.51.1

This is a patch on MAPL 2.51. This release fixes an issue where the per-cell counters in the generic coupler are not initialized properly. They are part of a derived type when gets allocated, but the pointers there are not initialized to NULL.

Testing of GEOS at c24 and c360 shows this to be zero-diff. However, there is the possibility that if you encountered this bug, some output could change.

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

Properly nullified the pointers to the per-grid-cell counters

What's Changed

Fixes #3232. Properly initialized per-cell counters by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/3234
Prepare for 2.51.1 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3236
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3235

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.51.0...v2.51.1

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.51.0

This release of MAPL has many new updates and changes. Some highlights include:

Support for the Intel ifx compiler (including in CI)
- Note that MAPL Unit tests only work with ifx 2025.0, though 2024.2 can work with GEOSgcm
Allow lat-lon grid factory to detect and use CF compliant lat-lon bounds in a file when making a grid
Added a call in GenericRefresh to allow GC's refresh method to be called; in support of CICE6 rewind
Add ability to use an ESMF_CONFIG_FILE environment variable to specify name of file to pass in pre-ESMF_Initialize options to ESMF (see ESMF Docs for allowed flags)
Added commandline options to checkpoint_benchmark.x and restart_benchmark.x to allow for easier testing of different configurations. Note that the old configuration file style of input is allowed via the --config_file option (which overrides any other command line options)
Fixed issue of some Baselibs builds appearing to support zstandard. This is not possible due to Baselibs building HDF5 and netCDF as static libraries
Preliminary support for llvm-flang
- NOTE: MAPL does not yet work with llvm-flang. But some updates were added here for development testing.
Trajectory sampler: fix a bug when group_name does not exist in netCDF file and a bug that omitted the first time point
Fixed a bug where the periodicity around the earth of the lat-lon grid was not being set properly when grid did not span from pole to pole

There are also new build requirements for MAPL 2.51:

CMake 3.24
ESMF 8.6.1

All tests show this to be zero-diff to MAPL 2.50

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Added

Added macro _RETURN(_SUCCESS) to fetch_data
Allow update offsets of ±timestep in ExtData2G
Minor revision (and generalization) of grid-def for GSI purposes
Add ability to use an ESMF_CONFIG_FILE environment variable to specify name of file to pass in pre-ESMF_Initialize options to ESMF (see ESMF Docs for allowed flags.
Allow lat-lon grid factory to detect and use CF compliant lat-lon bounds in a file when making a grid
PFIO/Variable class, new procedures to retrieve string/reals/int attributes from a variable
Added a call in GenericRefresh to allow GC's refresh method to be called; in support of CICE6 rewind

Changed

Change minimum CMake version to 3.24
- This is needed for f2py and meson support
Refactored tableEnd check
Added commandline options to checkpoint_benchmark.x and restart_benchmark.x to allow for easier testing of different configurations. Note that the old configuration file style of input is allowed via the --config_file option (which overrides any other command line options)
Update ESMF version for Baselibs to match that of Spack for consistency
Update components.yaml
- ESMA_env v4.32.0
- Baselibs 7.27.0
  - ESMF 8.7.0
  - curl 8.10.1
  - NCO 5.2.8
  - CDO 2.4.4
  - GSL 2.8
  - jpeg 9f
  - Various build fixes
- ESMA_cmake v3.55.0
- Fixes for using MAPL as a library in spack builds of GEOSgcm
- Various backports from v4
- Code for capturing mepo status output
- Fixes for f2py and meson (NOTE: Requires CMake minimum version of 3.24 in project for complete functionality)
- Fixes for MPI_STACK code run multiple times
Updates to CI
- Use v7.27.0 Baselibs
- Use GCC 14 for GNU tests
- Add pFUnit-less build test
- Enable ifx tests
Improve some writes to be more informative
- In base/MAPL_CFIO.F90, added Iam to a print statement so that when a read fails we know which routine failed
- In gridcomps/ExtData2G/ExtDataConfig.F90, print out the name of the duplicate collection that causes model to fail

Fixed

Fixed issue of some Baselibs builds appearing to support zstandard. This is not possible due to Baselibs building HDF5 and netCDF as static libraries
Workaround ifx bug in pfio/ArrayReference.F90 (NOTE: This currently targets all versions of ifx, but will need to be qualified or removed in the future)
Updates to support llvm-flang
Trajectory sampler: fix a bug when group_name does not exist in netCDF file and a bug that omitted the first time point
Fixed a bug where the periodicity around the earth of the lat-lon grid was not being set properly when grid did not span from pole to pole

What's Changed

Allow update offsets based on timestep for extdata2g by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/3099
Turn off zstandard with Baselibs by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3098
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3110
Update to ESMA_env v4.31.0 (ESMF 8.7.0) by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3114
This grid-def file is used in GSI by @rtodling in https://github.com/GEOS-ESM/MAPL/pull/3120
Update CI to use Baselibs 7.27.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3116
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3134
Update to use GCC 14 in CI GNU runs by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3138
Add options to benchmark scripts by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3097
Add CMake to skip ExtData2G unit test if pfunit not found by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3157
Trajectory sampler: minor bug fix by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/3168
check tableEnd efficiently by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3178
CI changes for GEOSadas by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3197
Updates for f2py-meson support by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3202
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3208
Feature/bmauer/fixes #3210 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3211
Feature/fixes #3175 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3212
Fix up CI image code by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3214
Added return to fetch_data by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3179
More informative error messages by @AgilentGCMS in https://github.com/GEOS-ESM/MAPL/pull/3161
Fixes #2845. Allow ESMFCONFIGFILE to specify ESMF control file by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3174
WIP: Fixes needed for flang by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3176
Workaround for ifx bug by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3185
support for CICE6(or others) to rewind by @zhaobin74 in https://github.com/GEOS-ESM/MAPL/pull/2982
Prepare for 2.51.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3224
GitFlow: Merge develop into main for 2.51 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3226

New Contributors

@rtodling made their first contribution in https://github.com/GEOS-ESM/MAPL/pull/3120
@AgilentGCMS made their first contribution in https://github.com/GEOS-ESM/MAPL/pull/3161
@zhaobin74 made their first contribution in https://github.com/GEOS-ESM/MAPL/pull/2982

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.50.3...v2.51.0

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.50.3

This patch release of MAPL 2.50 fixes a bug where c NULL character is not removed from end of string when reading netcdf attribute in NetCDF4_FileFormatter.F90

All testing shows this to be zero-diff to MAPL 2.50.2.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 and 2021.13 (Note: ifx does not yet work)
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.25.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.51.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.23 or higher.

From `CHANGELOG.md`

Fixed

Fixed bug where c null character is not removed from end of string when reading netcdf attribute in NetCDF4_FileFormatter.F90

What's Changed

fixes #3201 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3203

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.50.2...v2.50.3

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.40.3.1

NOTE: This is a special tweak release of MAPL 2.40.3. We do not recommend users use this version unless specifically told to.

This version of MAPL is essentialy v2.40.3 but with changes and fixes for ESMF 8.6.1 backported from newer tags. Thus, unlike MAPL 2.40.3, this version requires at least ESMF 8.6.1 (due to CMake changes).

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.6.1
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.31.1

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Changed

Backport changes to use ESMF 8.6.1 to 2.40.3
- Update to use ESMF::ESMF target
- Update to ESMF 8.6.1 FindESMF.cmake file
- Remove excessive prints in generic/OpenMP_Support.F90

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.40.3...v2.40.3.1

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.50.2

This patch release of MAPL 2.50 fixes a bug with the placement of a cycle in a coupler loop in History. This bug was exposed in the pert code used in GEOSadas.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 and 2021.13 (Note: ifx does not yet work)
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.25.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.51.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.23 or higher.

From `CHANGELOG.md`

Fixed

Fixed bug with cycle placement in coupler loop in History

What's Changed

fixes #3131 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3132

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.50.1...v2.50.2

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.47.1.2

This is a tweak patch on top of v2.47.1.1. It has a fix for a timer bug when using History and the GEOS Pert application.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.13 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.46.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Changed

Fixed timer bug in History with GEOS pert application

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.47.1.1...v2.47.1.2

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.47.1.1

This is a tweak release on MAPL v2.47.1 with a fix needed for GEOSadas development. It has a minor revision (and generalization) of MAPL_DefGridName for GSI purposes

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.13 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.46.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Changed

Minor revision (and generalization) of grid-def for GSI purposes

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.47.1...v2.47.1.1

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.50.1

This is a patch release on MAPL 2.50. It fixes an uninitialized variable found when running with GNU and ExtData2G when built with Debugging compiler options.

All tests show this is zero-diff to MAPL 2.50.0.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 and 2021.13 (Note: ifx does not yet work)
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.25.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.51.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.23 or higher.

From `CHANGELOG.md`

Fixed

Fixed unitialized variable bug in ExtData exposed by gfortran

What's Changed

Fixes #3073 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3107

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.50.0...v2.50.1

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.50.0

This release of MAPL has a fix for using point source emissions with stretched cube-sphere grids. This code was introduced in MAPL 2.45.0 and before this fix, leads to point sources on wrong faces of the cube (see this comment for before-and-after).

Beyond this, we also set the new minimum CMake version required to 3.23 as well as better error trapping.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 and 2021.13 (Note: ifx does not yet work)
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.25.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.51.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.23 or higher.

From `CHANGELOG.md`

Added

Added MAPL_Reverse_Schmidt to reverse the stretched grid for indices computation

Changed

Propagated the error message from MAPL_HorzIJIndex subroutine
Updated minimum CMake version to 3.23

Fixed

Trapped more errors from Extdata's i-server

What's Changed

Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3083
IJ indices for stretched grid and bubble up error from MAPL_getHorzIJindex subroutine by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2851
trapped more error from i-server by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3067
Prepare for 2.50.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3087
GitFlow: Merge develop into main for 2.50 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3090

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.49.1...v2.50.0

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.49.1

This is a patch release of MAPL 2.49. It fixes erroneous asserts that blocked some use cases when creating route handles.

All testing shows it to be zero-diff to 2.49.0

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 and 2021.13 (Note: ifx does not yet work)
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.25.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8 -- NEW DEPENDENCY FOR MAPL 2.48

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.51.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Removed erroneous asserts that blocked some use cases in creating route handles

What's Changed

GitFlow: Merge 2.46.4 hotfix into main by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3081

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.49.0...v2.49.1

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.46.4

This is a patch release of MAPL 2.46. It fixes erroneous asserts that blocked some use cases when creating route handles.

This should be zero-diff to 2.46.3.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.12 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.45.1

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Removed erroneous asserts that blocked some use cases in creating route handles

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.46.3...v2.46.4

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.49.0

This is a minor release of MAPL 2.

The main new functionality is support for zstandard compression in MAPL History. Note that this requires zstandard support built into netCDF (and HDF5). At the moment ESMA-Baselibs cannot exercise this as ESMA-Baselibs builds HDF5 and netCDF as static libraries so the zstandard plugin is not available. But spack builds of MAPL can use the new functionality. MAPL does have a test to make sure zstandard support is available and if not, if someone tries to use it, the system will fail out.

We also have bug fixes for macOS and NVHPC in this release.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 and 2021.13 (Note: ifx does not yet work)
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.25.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8 -- NEW DEPENDENCY FOR MAPL 2.48

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.51.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Added zstandard compression support
- Note this requires netCDF-C to have been compiled with zstandard support. We have a CMake test to check for this and enabling zstandard output in History will fail if the library does not support it

Changed

ExtDataDriver.x now uses ExtData2G by default
Update components.yaml
- ecbuild geos/v1.4.0
- Fixes bug between GCC, macOS, and the -pipe flag

Fixed

Workaround for NVHPC 24.9 involving use statement in block construct

What's Changed

fixes #3042 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3058
Update to ecbuild geos/v1.4.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3066
Fixes #1618. Add zstandard support by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3056
Workarounds for NVHPC 24.9 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3068
GitFlow: Merge develop into main for 2.49 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3071

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.48.0...v2.49.0

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.48.0

This is a minor release of MAPL. It has various updates and fixes compared to MAPL 2.47. All testing shows it to be zero-diff to MAPL 2.47.

The complete list of changes is delineated below but some highlights are:

Support for GCC 14 and Intel 2021.13
Added Fortran interface to UDUNITS2
- NOTE: This now means MAPL depends on UDUNITS2 (and transitively, expat)
Added 5 new ExtData tests to test compression, bit-shaving, and quantization
Add restart benchmark code restart_simulator.x in benchmark directory
Start implementing changes for vertical regridding in ExtData
Made the POSITIVE field attribute defaults to "down" in case it is not found
Added ability to read the attribute with explicit type "string" of a netcdf variable.
Add support for preliminary CF Conventions quantization properties

Note the with the last point, we added a new quantization keyword granular_bitround to History. This will be the preferred keyword for quantization in the future replacing GranularBR (which we formally deprecated and will remove in MAPL3).

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 and 2021.13 (Note: ifx does not yet work)
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.25.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1
- GFE 1.16.0
- gFTL 1.14.0
- gFTL-shared 1.9.0
- pFUnit 4.10.0 (optional)
- fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8 -- NEW DEPENDENCY FOR MAPL 2.48

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.51.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Added 5 new ExtData tests to test compression, bit-shaving, and quantization

Changed

Rename all single-digit ExtData tests to have a leading zero (i.e., case1 -> case01)
Add restart benchmark code restart_simulator.x in benchmark directory
Start implementing changes for vertical regridding in ExtData
Made the POSITIVE field attribute defaults to "down" in case it is not found
VLOCATION is not querried in MAPL_VerticalMethods.F90 for rank 2 fields
Fixed time print in Cap GC (from slashes to colons)
Added ability to read the attribute with explicit type "string" of a netcdf variable.
Add ability to connect export of the MAPL hierachy to ExtData via CAP.rc file
Added new driver, CapDriver.x, to excerise the MAPL_Cap with the configuratable component also used by ExtDataDriver.x
Added Fortran interface to UDUNITS2
- NOTE: This now means MAPL depends on UDUNITS2 (and transitively, expat)
Improve mask sampler by adding an MPI step and a LS_chunk (intermediate step)
CI Updates
- Update Baselibs in CI to 7.25.0
- Update to circleci-tools orb v4
- This adds the ability to do an ifx test along with the ifort test (though ifx is not yet enabled)
Update components.yaml
- ESMA_env v4.30.1
- Update to Baselibs 7.25.0
  - ESMF 8.6.1
  - GFE v1.16.0
  - gFTL v1.14.0
  - gFTL-shared v1.9.0
  - fArgParse v1.8.0
  - pFUnit v4.10.0
  - yaFyaml v1.4.0
  - curl 8.8.0
  - NCO 5.2.6
  - Other various fixes from the v8 branch
- Move to use Intel ifort 2021.13 at NCCS SLES15, NAS, and GMAO Desktops
- Move to use Intel MPI at NCCS SLES15 and GMAO Desktops
- Move to GEOSpyD Min24.4.4 Python 3.11
- Fix for csh at NAS
- ESMA_cmake v3.51.0
- Update esma_add_fortran_submodules function
- Move MPI detection out of FindBaselibs
- Add SMOD to submodule generator
- NAG OpenMP Workaround
- Support for Jemalloc and LLVM Flang
Add support for preliminary CF Conventions quantization properties
- Add new quantization keyword granular_bitround to History. This will be the preferred keyword for quantization in the future replacing GranularBR

Fixed

Fix profiler PercentageColumn test for GCC 14
Fix bug in ExtData Tests. CMake was overwriting the EXTDATA2G_SMALL_TESTS LABEL with ESSENTIAL

Deprecated

Deprecate GranularBR as a quantization method keyword in History. We will prefer granular_bitround in the future to match draft CF conventions. This will be removed in MAPL 3.

What's Changed

Improved mask sampler by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2890
Update to ESMA_cmake v3.48.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2905
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2915
Update CI Baselibs to 7.25.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2897
Add Refactor to PR Template by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2932
Pull UDUNITS fortran interface into develop by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2934
Clarify changelog for udunits dependency, reorder cmake by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2936
Update to ESMA_env v4.30.0 (Baselibs 7.25, Intel 2021.13) by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2927
Update to ESMA_cmake v3.49.0 (SMOD for submodules) by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2941
Fix GCC 14 issue with profiler test by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2946
Fix bug in CMake for ExtData2G Tests by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2947
some prep work for extdata2g vertical regridding development by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2949
Fixes #2926. Update quantization properties by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2940
Clean up CODEOWNERS by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2958
Clean up NAG + OpenMP CMake by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2960
GitFlow: Merge main into develop 2024-Aug-16 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2973
Fixes #2969 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2975
VERIFY Statement after MPI call by @JulesKouatchou in https://github.com/GEOS-ESM/MAPL/pull/2919
Add future ability to test ifx in CI by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2956
Feature/bmauer/add extdata imports by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2994
Update to ESMA_cmake v3.51.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3005
Feature/bmauer/containers extdata2g by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3007
Move from stale bot to stale action by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2990
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3011
Update to ESMA_env v4.30.1 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3015
Update stale action to remove stale label when unstale by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3017
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/3022
read explicit "string" type of an attribute of a netcdf variable by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/3026
Feature/fixes #3025 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3028
Fixes #3034. Convert Cap time print to colons by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3035
querring VLOCATION on MAPL_VerticalMethods.F90 for rank 2 fields by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/3039
new restart_simulator.x code by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/3040
Add extdata tests to test compression, bit-shaving, and quantization by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3047
Prepare for 2.48.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3049
GitFlow: Merge develop into main for 2.48 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/3051

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.47.2...v2.48.0

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.47.2

This is a patch release of MAPL 2.47. It fixes a bug when using externally initialized MPI.

Notice to users: External code should initialize MPI with MPI_THREAD_MULTIPLE as that is what MAPL expects. Also, code might need to call: call ESMF_InitializePreMPI() for all features of MAPL to be supported, namely if ESMF Single System Image (SSI) code is enabled. If users do not use this (or know what it is), it most likely is not needed.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.13 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.46.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fix bug in supporting externally initialized MPI

What's Changed

Add Refactor to PR Template by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2930
Fix support for external MPI by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2970
Hotfix: Fix support for external MPI by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2972

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.47.1...v2.47.2

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.46.3

This is a patch release of MAPL 2.46. It fixes a bug when using externally initialized MPI.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.12 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.45.1

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fix bug in supporting externally initialized MPI

What's Changed

Fix support for external MPI by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2970

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.46.2...v2.46.3

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.47.1

This is a patch release of MAPL 2.47. It fixes a bug in FieldSet routines when passing R8 ESMF fields

This is zero-diff to MAPL 2.47.0

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.13 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.46.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fixed bug in FieldSet routines when passing R8 ESMF fields

What's Changed

fixes #2913 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2914

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.47.0...v2.47.1

- Fortran
Published by mathomp4 over 1 year ago

MAPL - MAPL 2.47.0

This is a minor release of MAPL. It has various fixes and updates compared to MAPL 2.46 including:

Add new option to Regrid_Util.x to write and re-use ESMF pregenerated weights
Add capability to mangle LONG_NAME in ACG with a different prefix
Updated checkpoint_simulator to not create and close file if not writing
Improved timing for station sampler with GHCNd input: used LocStream with CS background, LS with uniform distributed points, and MPI_GatherV
Update ExtData tests to add new category of SLOW tests that take 10-30 seconds and remove them from the ESSENTIAL label
Bug fixes for NVHPC

All testing shows this is zero-diff to MAPL 2.46

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.12 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.46.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Add new option to Regrid_Util.x to write and re-use ESMF pregenerated weights
If file path length exceeds ESMF_MAXSTR, add _FAIL in subroutine fglob
Add GNU UFS-like CI test
Add capability to mangle LONG_NAME in ACG with a different prefix

Changed

pFIO Clients don't send "Done" message when there is no request
Update components.yaml
- ESMA_cmake v3.46.0
- Fix bugs in meson detection
- Fix for building on older macOS
- Add esma_add_fortran_submodules function
Updated checkpoint_simulator to not create and close file if not writing
Update ExtData tests
- Add new category of SLOW tests that take 10-30 seconds and remove them from the ESSENTIAL label run in CI
- Remove ExtData1G tests from ESSENTIAL label, but run them in the UFS-like CI test
Improved timing for station sampler with GHCNd input: used LocStream with CS background, LS with uniform distributed points, and MPI_GatherV

Fixed

Fixed a bug in generate_newnxy in MAPL_SwathGridFactory.F90 (NX*NY=Ncore)
Fixes for NVHPC 24.5
- Convert MAPL_GeosatMaskMod to "interface-in-both-files" submodule style

What's Changed

Update to ESMA_cmake v3.45.1 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2809
Add GNU UFS-Like CI test by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2819
Do not create file if not writing by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2815
Added timer to sampler codes in history directory by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2831
Add debug information to fglob function by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2830
avoid "done" message when there is no request by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2808
Fix a bug for Nx Ny in swath grid by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2840
Regrid_Util.x and file weights by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2848
Update CI for latest GEOSgcm by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2865
Remove slow tests from ESSENTIAL ExtData tests, turn off ExtData1G as ESSENTIAL by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2870
Allow alternative mangle for LONG_NAME by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/2858
Fixes for NVHPC 24.5 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2856
Update to ESMA_cmake v3.46.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2877
Improved station sampler by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2838
Prepare for 2.47.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2876
GitFlow: Merge develop into main for 2.47 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2887

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.46.2...v2.47.0

- Fortran
Published by mathomp4 almost 2 years ago

MAPL - MAPL 2.46.2

This is a patch release of MAPL 2.46. This release removes excessive print statements in generic/OpenMP_Support.F90 (see #2853).

As all that is different is removal of print statements, this is trivially zero-diff to MAPL 2.46.1

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.12 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.45.1

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Removed

Remove excessive print statements in generic/OpenMP_Support.F90

What's Changed

rm debugging print statement by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2854

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.46.1...v2.46.2

- Fortran
Published by mathomp4 almost 2 years ago

MAPL - MAPL 2.40.5

This is a patch release on MAPL 2.40 which removes some print statements when using the MAPL OpenMP support (see #2853).

As all this does is remove prints, this is trivially zero-diff to MAPL v2.40.4

The libraries this version of MAPL is currently tested with are below. (This is a change since MAPL 2.39)

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.31.1

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Removed

Remove extra print statement in generic/OpenMP_Support.F90

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.40.4...v2.40.5

- Fortran
Published by mathomp4 almost 2 years ago

MAPL - MAPL 2.8.0.10

This is a tweak release on MAPL 2.8.0.9 which adds support for Python3 for use in older tags.

From `CHANGELOG.md`

Changed

Backport Python3 changes for Python/ code to 2.8
Change shebang in Apps/MAPL_GridCompSpecs_ACG.py to use python3

What's Changed

Backport Python3 changes to MAPL 2.8.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2801

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.8.0.9...v2.8.0.10

- Fortran
Published by mathomp4 almost 2 years ago

MAPL - MAPL 2.46.1

This patch release of MAPL 2.46 updates the ESMA_cmake version in components.yaml to v3.45.1. This release fixes a bug in f2py3 handling for detecting when to use meson vs distutils for f2py use.

It is zero-diff to MAPL 2.46.0

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.12 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.45.1

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Update components.yaml to avoid f2py error with python 3.11
- ESMA_cmake v3.45.1
- Fix bug in meson detection

What's Changed

Update to ESMA_cmake v3.45.1 on main by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2822

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.46.0...v2.46.1

- Fortran
Published by mathomp4 almost 2 years ago

MAPL - MAPL 2.46.0

This release of MAPL has fixes for non-Baselibs (aka Spack) builds of MAPL. With MAPL 2.44 and 2.45 spack builds were broken due to odd CMake issues.

With this release, spack install mapl will work again (once the spack mapl package is updated). Note that spack builds of MAPL 2.46 require building with ESMF 8.6.1 at least. (ESMF 8.6.1b04 also works).

Baselibs builds of MAPL (and GEOSgcm) do not have any issues and all testing shows this to be zero-diff to MAPL 2.45

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.12 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.45.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Update FindESMF.cmake to match that in ESMF 8.6.1

Changed

Set required version of ESMF to 8.6.1
Update components.yaml
- ESMA_cmake v3.45.0
- BUILT_ON_SLES15 set to FALSE on NCCS if not built on SLES15
- Update FindESMF.cmake to match that in ESMF 8.6.1
- Suppress remarks in Intel Fortran Classic 2021.12
- ESMA_env v4.29.0 (Baselibs 7.24.0)
- Update to ESMF 8.6.1b04
- NCO 5.2.4
- curl 8.7.1

Fixed

Fixed non-Baselibs build using ESMF::ESMF target

What's Changed

Fixes for non-Baselibs (spack) build by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2682
GitFlow: Merge develop into main for 2.46 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2804
Fix GNU docker build by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2810

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.45.0...v2.46.0

- Fortran
Published by mathomp4 almost 2 years ago

MAPL - MAPL 2.45.0

This release of MAPL has many updates and fixes. Among the highlights are:

Fix inconsistency in History cubed-sphere output where multi-dimensional coordinate variables are also compressed if requested in the collection
Removed unnecessary memory allocation for tile reads. This is critical for high res runs on SCU17
Add new per-collection timer output for History
New SPLIT_CHECKPOINT option replacing the write-by-face option. This will write a file per writer
Various fixes and additions for trajectory, swath and station work
Allow arithmetic operations to be performed on fields from bundles in History
Added two options, dependson and dependson_children, to ACG
Support for GCC 13 and NAG 7.2 (with GFE v1.15.0)
And many many more (see below)

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.12 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.23.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.0 (required)
- GFE 1.15.0
- gFTL 1.13.0
- gFTL-shared 1.8.0
- pFUnit 4.9.0 (optional)
- fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.44.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Add glob function in sampler code, supporting wild character, e.g., filename template = amsr2_gcom-w1.%y4%m2%d2T%h2%n2*.nc4
Checked resource for o-server. It quits if the numer requested is inconsistent with being used
Replace local HorzIJIndex sear with the GlobalHorzIJindex search
Change grdisok function to avoid collective call
Allow fields with ungridded dimension and bundles to be created in ExtDataDriver.x
Allow arithmetic operations to be performed on fields from bundles in History
Adapted subroutine RegridVector from GriddedIO.F90 to MAPL_EpochSwathMod.F90 (changing class name for this)
Give informative error message when swath grid Epoch does not equal swath sampler frequency
Add mask sampler for geostationary satellite (GEOS-R series)
Add geostation name into NC for station sampler
Add mapping between the IODA locindex and trajectory NC output locindex
Add allocate(X, _STAT) to sampler codes
Skip destroyregengrid when list(n)%end_alarm is active (the last time step in sampler)
Add extractunquoteditem(STR1) to fix a bug in geovalxname(mxngeoval) in trajectory sampler
Add if (compute_transpose) to sub. destroyroutehandle to avoid destroying a nonexisting route handle
Add option to MAPL regridding layer to write and retrieve ESMF weights.
Add options to History and ExtData to turn on the ability to write and read route handle weights
Add option to renable the transpose computation when calling make_regridder
Added procedures to remove an attribute from a FileMetadata object and from a Variable object in PFIO
Add per-collection timer output for History
Add python utilities to split and recombine restarts
Add a new "SPLIT_CHECKPOINT:" option that has replaced the write-by-face option. This will write a file per writer
Implemented a new algorthm to read tile files
Added two options, dependson and dependson_children, to ACG
Add CI job to test Ford build (does not publish)

Changed

Release the pfio memory as early as possible
Trajectory sampler: lsrt -> lschunk (via mpigatherV) -> lsdistributed(bk=csgrid; via ESMFFieldRedistStore), aiming to save computational time. To gather 3D data via mpi, options for level by level and single-3D are added via ifdef.
The MAPL_ESMFRegridder manage now does compute the transpose by default
Bypassed the I-Server reading call when there is no extdata
Created new ESSENTIAL ctest label for tests that must pass for a release
- These are "simple" quick tests that don't require a lot of resources
- With ESMA_cmake v3.43.0, make tests will only run tests with the ESSENTIAL label. To run all tests, use make tests-all
Update components.yaml
- ESMA_cmake v3.43.0
- Updates to MPI detection
- Enable -quiet flag for NAG
- make tests now only runs tests with the ESSENTIAL label. To run all tests, use make tests-all
- BUILT_ON_SLES15 set to FALSE on NCCS if not built on SLES15
- ESMA_env v4.28.0 (Baselibs 7.23.0)
- Updates to GFE v1.15
- Fixes for NAG
- Use GCC 11.4 as Intel backing compiler at NCCS SLES15
Update CI to use Baselibs 7.23.0 and GCC 13.2 for GNU tests

Fixed

Change to IntArray's pointer to store data to avoid Intel Ifort bug
Fix inconsistency in History output so that multi-dimensional coordinate variables are also compressed if requested in the collection
Minor workaround to enable NAG 7.2.01 to compile. (Reproducer submitted to NAG.)
Fixed bug with split restart files
Removed unnecessary memory allocation for tile reads. This is critical for high res runs on SCU17
Fixes to allow SCM model to run

Removed

Removed CMake logic for macOS + Intel as that is an unsupported configuration

What's Changed

Feature/atrayano/io fixes by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/2592
New SPLIT_CHECKPOINT option to replace read/write by face by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2394
ignore iclients call when no exdata is needed by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2619
Feature/bmauer/per collection timer by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2622
Fixes to allow SCM model to run by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2602
Add remove attribute procedure to FileMetadata by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2626
Bump CircleCI-Public/trigger-circleci-pipeline-action from 1.1.0 to 1.2.0 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/2621
Fix but with split restarts by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2629
Store regrid weights by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2631
restore line by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2634
Fix a bug in subroutine destroyroutehandle by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2637
Fix bug with GriddedIO and Extdata1G by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2639
Mask sampler for geostationary satellite by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2600
Minor improvement on swath sampler by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2645
Update to ESMA_cmake v3.42.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2651
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2661
Feature/tclune#2663 port to nag 7.201 by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2664
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2669
Feature/bmauer/fixes #2440 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2670
remove block that was for debugging by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2673
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2679
changes needed for R21C by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2685
Merge R21C into develop: Compress lats and lons in CS output if deflate requested by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2689
Add DEPENDSON and DEPENDSON_CHILDREN options to ACG by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/2676
Add ESSENTIAL label by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2659
Add MPIgaththerV as an intermediate step between LSroot and LSdistributed(bk=csgrid) by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2660
Add missing INT64 use by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2705
Update to Baselibs 7.23.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2627
unify HorzIJIndex search by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2636
Clean up CI by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2717
Update pull request template and github actions by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2715
GitFlow: Handmerge main to develop 2024-Apr-11 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2726
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2727
check if the number of nodes of o-server is consistent by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2701
Use glob function to allow wild character in template by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2746
Add Ford CI job by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2760
Backport Ford fixes from MAPL3 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2764
Fix an error in filename when wild character is introduced into template by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2769
Add missing c_ptr declaration for ESMF 8.6.1b04 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2776
Update GitHub Actions to use GCC 13.2 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2777
Remove macOS + Intel CMake logic by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2778
work around #2703 and release pfio memory as early as possible by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2732
Prepare for 2.45.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2786
Gitflow: Merge develop into main for 2.45 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2787

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.44.3...v2.45.0

- Fortran
Published by mathomp4 almost 2 years ago

MAPL - MAPL 2.44.3

This is a patch release of MAPL 2.44 which fixes a unit test. This is zero-diff to MAPL 2.44.2 and should have no effect on users of MAPL.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.10.0 seems to work, ifx does not yet work)
GCC 12.3.0 (13 not supported)
NAG 7.1

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.43 and earlier, namely ESMF and GFE

Baselibs 7.17.2
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.0 (required)
- GFE 1.12.0
- gFTL 1.11.0
- gFTL-shared 1.7.0
- pFUnit 4.8.0 (optional)
- fArgParse 1.6.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.11.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.40.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

The bundle I/O unit test was failing on NAG. Partly due to an untrapped return code, but also some weird issue with setting values in ESMF Config. Probably not a bug in the compiler but something in ESMF or MAPL handling line continuations.

What's Changed

Fixes #2686 by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2687

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.44.2...v2.44.3

- Fortran
Published by mathomp4 about 2 years ago

MAPL - MAPL 2.44.2

This is a patch release of MAPL 2.44. This release fixes a bug with time_ave_util.x when the input files have a level size of 1.

This is trivially zero-diff for GEOSgcm to MAPL 2.44.1 as it only affects this utility.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.10.0 seems to work, ifx does not yet work)
GCC 12.3.0 (13 not supported)
NAG 7.1

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.43 and earlier, namely ESMF and GFE

Baselibs 7.17.2
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.0 (required)
- GFE 1.12.0
- gFTL 1.11.0
- gFTL-shared 1.7.0
- pFUnit 4.8.0 (optional)
- fArgParse 1.6.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.11.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.40.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fixed bug in time_ave_util.x when the input files have a level size of 1

What's Changed

Fix up Ford Docs by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2668
fixes #2675 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2677
Prepare for 2.44.2 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2678

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.44.1...v2.44.2

- Fortran
Published by mathomp4 about 2 years ago

MAPL - MAPL 2.44.1

This is a patch release of MAPL 2.44. This release fixes a bug where bit-shaved, instantaneous binary output in History was modifying the original export state passed.

Note this means that if you were outputting bit-shaved instantaneous History output, this possibly could be non-zero-diff (if one of the exports in this collection was not purely diagnostic). We have only seen this with GEOSldas, the GEOSgcm does not usually output binary history.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.10.0 seems to work, ifx does not yet work)
GCC 12.3.0 (13 not supported)
NAG 7.1

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.43 and earlier, namely ESMF and GFE

Baselibs 7.17.2
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.0 (required)
- GFE 1.12.0
- gFTL 1.11.0
- gFTL-shared 1.7.0
- pFUnit 4.8.0 (optional)
- fArgParse 1.6.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.11.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.40.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fix bug where bit-shaved, instantaneous binary output in History was modifying the original export state passed

What's Changed

fixes #2657 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2658

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.44.0...v2.44.1

- Fortran
Published by mathomp4 about 2 years ago

MAPL - MAPL 2.44.0

This release of MAPL has many new features and fixes. Among the new features and fixes are:

Various improvements to History "Samplers" that sample model data at geolocations of simulated instruments. These include support for both trajectories (time dependent lat/lon) and swaths (time-dependent scans)
Added memory utility, MAPL_MemReport that can be used in any code linking MAPL
Added capability in the MAPL ESMF regridding wrapper to apply a destination mask if the destination grid contains a mask
Updates for using MAPL with GEOS in a hybrid MPI+OpenMP paradigm
Various fixes for NVHPC work

Also, with this version of MAPL, we now require ESMF 8.6.0 as MAPL now uses functionality only supported in that version. Moreover, all references to ESMF as a CMake target are now done as ESMF::ESMF. This is supported in Baselibs build with ESMAcmake v3.40.0 (**required_** for Baselibs builds) and for non-Baselibs builds (i.e., spack) via a newer FindESMF.cmake file (currently from ESMF develop and will be in ESMF 8.6.1+).

Note though that builds using MAPL and using Baselibs (aka as GEOSgcm is currently run) are not required to move to the ESMF::ESMF target everywhere. ESMA_cmake adds aliases so that esmf, ESMF and ESMF::ESMF are all supported. The change to ESMF::ESMF was for external users who found that MAPL was bringing in ESMF as a target, but ESMF was not available so CMake was then added -lESMF to link lines which caused failures.

MAPL is currently tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.10.0 seems to work, ifx does not yet work)
GCC 12.3.0 (13 not supported)
NAG 7.1

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.43 and earlier, namely ESMF and GFE

Baselibs 7.17.2
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.0 (required)
- GFE 1.12.0
- gFTL 1.11.0
- gFTL-shared 1.7.0
- pFUnit 4.8.0 (optional)
- fArgParse 1.6.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.11.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.40.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Added nf90 interface to read and write 1d string
Convert from ABI Fixed Grid to lon/lat coordinates used in MAPL_XYGridFactory (supporting geostationary GOES-R series)
Modify trajectory sampler for a collection with multiple platforms: P3B (air craft) + FIREX
Modify swath sampler to handle two Epoch swath grids
Handle regrid accumulate for time step (1 sec) during which no obs exists
Use IntState%stampoffset(n) to adjust filenames for an epoch time
parse "GOCART::CO2" from 'geovals_fields' entry in PLATFORM
Add call MAPL_InitializeShmem to ExtDataDriverGridComp.F90
Read swath data on root, call MAPLCommsBcast [which sends data to Shmem (when Shmem initialized) or to MAPLcomm otherwise]. This approach avoids race in reading nc files [e.g. 37 files for 3 hr swath data]
Added memory utility, MAPL_MemReport that can be used in any code linking MAPL
Added capability in XY grid factory to add a mask to the grid any points are missing needed for geostationary input data
Added capability in the MAPL ESMF regridding wrapper to apply a destination mask if the destination grid contains a mask
Added INSTALL.md file to provide instructions on how to install MAPL

Changed

Updated ESMF required version to 8.6.0
Allocate gridded fields to use the pinflag option needed for the Single System Image (SSI) capability.
Made changes to allocate fields to use farray instead of farrayPtr. This allows explicit specification of indexflag required by the new MAPL field split functionality. This functionality allows a clean way to create a new field from an exiting field where the new field is a 'slice' of the existing field with the slicing index being that of the trailing ungiridded dim of the existing field.
Replaced RC=STATUS plus _VERIFY(RC) in Base_Base_implementation.F90 with just _RC in line with our new convention.
Updated CI to use Open MPI 5.0.0 for GNU
Enable Ninja for CI builds of MAPL
Removed use of ESMF_HAS_ACHAR_BUG CMake option and code use in MAPL_Config.F90. Testing has shown that with ESMF 8.6 (which is now required), NAG no longer needs this workaround.
Refactor the CircleCI workflows for more flexibility
Fix field utils issue - add npes argument to test subroutine decorators.
Change MAPL CMake to use ESMF::ESMF target instead of esmf or ESMF as the imported target name
- Updated FindESMF.cmake to match that of ESMF develop as of commit da8f410. This will be in ESMF 8.6.1+
- Requires ESMA_cmake 3.40.0 or later as this adds the ESMF::ESMF target ALIAS for Baselibs and non-Baselibs builds
Changed CMakePresets.json
- Updated to version 7 and required CMake 3.27.0 (the minimum version that supports CMakePresets.json v7)
- Changed build style on NCCS machines to by default put build and install directories in a user-specified directory so as not to pollute swdev

Fixed

Restore missing submodule interfaces
Explictly use some iso_c_binding types previously pulled in through ESMF. This is fixed in future ESMF versions (8.7+) and so we anticipate this here
Add explicit Fortran_MODULE_DIRECTORY to CMakeLists.txt in benchmarks to avoid race condition in Ninja builds
Add check to make sure ESMF was not built as mpiuni
Fixed failing tests for field_utils.
Various fixes for NVHPC work

What's Changed

Field allocation for SSI capability by @aoloso in https://github.com/GEOS-ESM/MAPL/pull/2471
Add generic memory profiling utility by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2509
Update CI to use Open MPI 5.0.0 for GNU by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2519
Enable Ninja Builds of GEOS in CI by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2517
Fix wrong type of RETURN by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2522
updates for geostationary output part 1 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2528
Explicitly use isocbinding types by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2531
Remove ESMFHASACHARBUG CMake and cpp macro, update to ESMAcmake v3.37.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2524
Restore missing interfaces by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2518
Refactor CircleCI workflows by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2536
Revise sampler code in History by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2527
Fix fields utils, Issue #2530 by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/2538
updates for geostationary output part 2 by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2546
Bump styfle/cancel-workflow-action from 0.12.0 to 0.12.1 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/2555
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2560
Fixes #2553. Detect mpiuni builds of ESMF by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2556
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2572
Add Special NCCS Build Preset by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2566
added nf90 interface to read and write 1d string by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2568
Fixes #2569. Convert MAPL to use ESMF::ESMF target by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2575
Fix field utils tests by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/2584
Add INSTALL.md by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2583
Fixes for NVHPC by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2395
Prepare for 2.44.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2590
GitFlow: Merge develop into main for release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2593

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.43.2...v2.44.0

- Fortran
Published by mathomp4 about 2 years ago

MAPL - MAPL 2.43.2

This is a hotfix on MAPL 2.43 which fixes a memory leak affecting regional masking. Temporary ESMF field was created but never destroyed.

This is zero-diff to MAPL 2.43.1

MAPL is currently tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.10.0 seems to work, ifx does not yet work)
GCC 12.3.0 (13 not supported)
NAG 7.1

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.34.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fixed memory leak affecting regional masking. Temporary ESMF field was created but never destroyed

What's Changed

Fixed a memory leak affecting regional masking by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/2571
Update changelog and cmake for 2.43.2 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2573

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.43.1...v2.43.2

- Fortran
Published by mathomp4 about 2 years ago

MAPL - MAPL 2.43.1

This is a hotfix for MAPL 2.43 which fixes an issue with PFIO when client root process passes no data AND using multi group server (see #2557).

MAPL is currently tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.10.0 seems to work, ifx does not yet work)
GCC 12.3.0 (13 not supported)
NAG 7.1

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.34.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Added 0-size message to o-server root processes (fixes #2557)

What's Changed

add message to oserver-root even it is 0-sized by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2559
Prepare for 2.43.1 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2561

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.43.0...v2.43.1

- Fortran
Published by mathomp4 about 2 years ago

MAPL - MAPL 2.43.0

This is a minor release of MAPL. It has various updates and fixes as delineated below. Some highlights are:

Updates for ongoing work with trajectory and station sampling
Examples on how to use the Automatic Code Generator
Fixes for use of the MAPL Python code with Python 3
Fixes for GCC 13 which is still NOT SUPPORTED but this allows for further testing
Fix to allow ExtData2G to be built as static library

MAPL is currently tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.10.0 seems to work, ifx does not yet work)
GCC 12.3.0 (13 not supported)
NAG 7.1

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.34.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Station sampler: add support to Global Historical Climatology Network Daily (GHCN-D)
Add to trajectory sampler DEFINEOBSPLATFORM for reading multiple IODA files. To do this, we add union_platform function for observation.
New directory (docs/tutorial/grid_comps/automatic_code_generator) containing an example showing how to automatically generate the source code using the MAPL_GridCompSpecs_ACG.py tool.
Added/modified a few _ASSERT calls in ExtData, to better explain what is wrong in .yaml file

Changed

Change the verification of the grid in MAPL_GetGlobalHorzIJIndex to avoid collective call
Swath grid step 1: allow for destroying and regenerating swath grid and regenerating regridder route handle, and creating allocatable metadata in griddedIO. Modifications are made to GriddedIO.F90, MAPLAbstractRegridder.F90, and MAPLEsmfRegridder.F90.
Swath grid step 2: add control keywords for swath grid. Allow for filename template with DOY. Allow for missing obs files. User needs to specify indexnamelon/lat, varnamelon/lat/time, tunit, obsfilebegin/end/interval, Epoch and Epoch_init.
Update CI to Baselibs 7.17.0 (for future MAPL3 work) and the BCs v11.3.0 (to fix coupled run)
Update components.yaml
- ESMA_env v4.24.0 (Baselibs 7.17.0)
Update CI to use circleci-tools v2
Changed the Python MAPL __init__.py file to restore behavior from pre-Python3 transition where we did from foo import *. Also fix up other Python2 code to Python3.

Fixed

Fixed bug broken multi-step file output in History under certain template conditions
[#2433] Implemented workarounds for gfortran-13
Missing TARGET in GriddedIO - exposed runtime error when using NAG + debug.
Allow ExtData2G to be built as SHARED or STATIC

What's Changed

Automatic Code Generator Sample Code (0 diff) by @JulesKouatchou in https://github.com/GEOS-ESM/MAPL/pull/2420
avoid collective call inside subroutine MAPL_GetGlobalHorzIJIndex by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2436
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2442
Fixes #2433 Minor changes for gfortran-13. by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2443
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2449
Update CI and components to match latest GEOSgcm by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2459
Swath grid for MAPL_HistoryGridComp by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2458
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2461
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2472
Update to circleci-tools v2 orb; ESMA_env v4.24 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2466
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2480
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2488
fixes #2487 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2490
Bump actions/upload-artifact from 3 to 4 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/2493
Fixes #2499: Allow ExtData2G to be built static by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2500
Print helpful information for certain ExtData problems. by @mmanyin in https://github.com/GEOS-ESM/MAPL/pull/2452
Add type obs_platform to Trajectory Sampler by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2465
Station sampler: add support to Global Historical Climatology Network Daily (GHCN-D) by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2477
Restore MAPL Python2 import behavior by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2496
Prepare for MAPL 2.43.0 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2503
GitFlow: Merge develop into main for release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2504

New Contributors

@mmanyin made their first contribution in https://github.com/GEOS-ESM/MAPL/pull/2452

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.42.4...v2.43.0

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.42.4

This is a patch release of MAPL 2.42. It fixes issues found by NAG in our unit tests.

All testing shows it zero-diff to MAPL 2.42.3

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.34.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Changed

Improved error message for missing labels in GridManager.

Fixed

Corrected some unit tests (and test utilities) to fix dangling pointers detected by NAG. Most (possibly all) of these changes are already on release/MAPL-v3, but it was getting annoying to have NAG fail unit tests with develop branch.
Fix for CMake an Apple. Needs to set __DARWIN as an fpp flag. (Only used by NAG, but ...)

What's Changed

Hotfix/nag dangling pointers by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2484

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.42.3...v2.42.4

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.42.3

This is a patch release of MAPL 2.42. It fixes an issue with MAPL_Abort() which was passing an uninitialized integer to MPI_Abort() resulting in spurious false successes when running ctest.

This is zero-diff to MAPL 2.42.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.34.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

MAPL_Abort() was passing an uninitialized integer to MPI_Abort() resulting in spurious false successes when running ctest. Maybe was happening frequently, but CI would be blind to this.

What's Changed

Hotfix/tclune/#2478 mapl abort by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2479
Prepare for 2.42.3 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2481

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.42.2...v2.42.3

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.42.2

This is a patch release of MAPL 2.42 with fixes for the NAG compiler.

All changes show zero-diff for GEOSgcm compared to MAPL 2.42.1

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.34.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Corrected some unit tests (and test utilities) to fix dangling pointers detected by NAG. Most (possibly all) of these changes are already on release/MAPL-v3, but it was getting annoying to have NAG fail unit tests with develop branch.

What's Changed

Fixes to let Ford docs work by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2453
Update Ford for gFTL v1.11 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2467
Fixes for NAG dangling pointers. by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2469
Update changelog and cmake for release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2473

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.42.1...v2.42.2

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.42.1

This is a patch release of MAPL 2.42 which fixes a missing USE statement for C_PTR in FieldPointerUtilities.F90

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.34.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Inserted missing USE statement for C_PTR in FieldPointerUtilities.F90

What's Changed

Add ability to trigger docs GitHub Action workflow by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2441
Fixes #2447 by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2448

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.42.0...v2.42.1

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.42.0

This is a minor release of MAPL. There are many new fixes and additions to this release including:

Changes

Various workarounds for building MAPL with MPICH
Added a new benchmark to simulate writing a cubed-sphere file using various tunable strategies
Update to components.yaml
- ESMA_cmake v3.36.0 (Support for SLES15 at NCCS, support for Intel 2021.10)
- ESMA_env v4.20.5 (Support for SLES15 at NCCS)

Fixes

Introduced workaround for Intel 2021.10 bug in generic layer.
Updated writebyoserver logic so that the decision to write by the oserver is based on whether the output server client is passed in
Fixed incorrect History print during runtime

All testing show it is zero-diff to MAPL 2.41.

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.34.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Various workarounds for building MAPL with MPICH
- Non-support for C_PTR in MPI_Alloc_Mem ((MPICH Issue #6691)[https://github.com/pmodels/mpich/issues/6691])
- Non-support for ierror keyword arguments with use mpi ((MPICH Issue #6693)[https://github.com/pmodels/mpich/issues/6693])
Add new benchmark to simulation writing a cubed-sphere file using various tunable strategies

Changed

Modified fpp macro _UNUSED_DUMMY(x) to use ASSOCIATE instead of PRINT. With this change it can be used in PURE procedures.
Make error handling in PlainnetCDFTime consistent with MAPL standard error handling
Extend unit tests for FileSystemUtilities.
Updated handling of NetCDF time values
Update components.yaml
- ESMA_cmake v3.36.0 (Support for SLES15 at NCCS, support for Intel 2021.10)
- ESMA_env v4.20.5 (Support for SLES15 at NCCS)

Fixed

Introduced workaround for Intel 2021.10 bug in generic layer.
Updated writebyoserver logic so that the decision to write by the oserver is based on whether the output server client is passed in
Updated CI GEOSadas build to use special branch (as stock ADAS at the moment is too far behind GEOSgcm main)
Fix incorrect History print during runtime

What's Changed

Fixes #2373 - improved unused dummy macro by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2374
Reduces compiler warnings for nag. by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2377
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2383
Update PlainnetCDFTime to use standard MAPL error handling by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/2386
Fix for NAG and Unused Dummy at runtime by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2392
Update parsing for MAPL_NetCDF datetime with real datetime support and public subroutine return values by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/2170
Bump styfle/cancel-workflow-action from 0.11.0 to 0.12.0 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/2397
Remove commented code with ESMF_Attribute by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2389
Extend test_FileSystemUtilities to test files with no extension and files with base names that include a period by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/2387
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2401
checkpoint simulator by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2403
Update checkpoint_simulator.F90 by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2405
Update GEOSadas CI Build by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2409
Fixes #2407. Fix bad history print by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2410
Workarounds for MPICH by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2381
Automatic Code Generator Docymentation(0-diff) by @JulesKouatchou in https://github.com/GEOS-ESM/MAPL/pull/2413
Feature/bmauer/fixes #2418 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2419
Fix to allow Intel Fortran 2021.10 to compile by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2414
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2427
Prepare for 2.42.0 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2428
GitFlow: Merge develop into main for 2.42.0 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2429

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.41.2...v2.42.0

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.41.2

This patch release of MAPL 2.41 fixes a missing initialize of pFlogger in pfio test.

All tests show this is zero-diff to MAPL 2.41.1

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.34.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fixed missing initialize of pFlogger in a pfio test. Not clear why this was not failing for other compilers - detected with ifort 2021.10.0.

What's Changed

Fixed missing pflogger initialization. by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2425

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.41.1...v2.41.2

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.41.1

This is a patch release of MAPL 2.41. It fixes a missing status check when reading import checkpoint in MAPL_GenericInitialize

It is zero-diff to MAPL 2.41.0

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.34.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Adding missing check on the return status when reading import checkpoint in MAPL_GenericInitialize

What's Changed

Move the Ford/ folder into the docs/ folder (0 diff) by @JulesKouatchou in https://github.com/GEOS-ESM/MAPL/pull/2382
Turn on Ford Graphs, clean up README by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2378
Fixes #2398 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2399

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.41.0...v2.41.1

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.41.0

This is a minor release of MAPL with many changes and fixes to MAPL 2.40. Prominent updates include:

Updates for ongoing trajectory sampling work
Updates and improvements to documentation
Changes to MAPL_Resource.F90 to allow NVIDIA compilers to build this file
Adding a new benchmark suite
Cleaning up much of the code to reduce compiler warnings and remarks at compile time:
- Converted all uses of mpif.h to use mpi
- Converted all uses of character* to character(len=)
- Removed many unused variables
- Added many _UNUSED_DUMMY() calls
- Converted statement functions to internal functions
and more as noted in the CHANGELOG.md below

All tests show this to be zero-diff to MAPL 2.40

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you should use:

ESMA_cmake v3.34.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Saved weights and points for the vertical interpolation
Added new benchmark suite. Initial benchmarks are:
1. measuring raw bandwidth of a filesystem with multiple independent streams
2. measuring the MPI_Gatherv() used in writing checkpoints.
3. a combo benchmark that does both operations
Added the ability to read string attributes of variables. This is as opposed to "character" attributes - a distinction made by NetCDF. Previously a small kludge had been used to allow reading string attributes, but was limited to attributes on the global var.
Added markdown documentation for select items such as ExtData, History and a few other sources
Trajectory sampler with Epoch time span
Added utility to convert binary files used by MAPL_ReadForcing to NetCDF
Allow a negative "update_offset" keyword in the sampling section of ExtData2G's input file by prepending the ISO time duration with a negative sign. I.E -PT12H for example
Added three new macros
- _HERE: Returns the current file and line number
- _RETURN_IF(cond): Returns if the condition is true
- _RETURN_UNLESS(cond): Returns if the condition is false
Created a new docs directory that has the following subdirectories
- tutorial: what used to be a top directory (with the same content)
- user_guide: a new directory that will serve as MAPL User's Guide.
OSSE project: trajectory sampler (regrid to IODA file locations), capable of ingesting multiple files and regridding via one route-handle

Changed

Converted hinterp.F to free format (hinterp.F90)
Modified tilegrid creation to use index flag ESMFINDEXDELOCAL instead of ESMFINDEXUSER
Renamed "geom" subdir and library to "field_utils"
Updated CircleCI to use v11.2.0 bcs
Backported changes in pfio from release/MAPL-v3 to enable pfio unit tests
Update components.yaml
- ESMA_cmake v3.34.0 (Support for Intel Fortran under Rosetta2, updated NAG flags)
Cleanup Fortran
- Converted all uses of mpif.h to use mpi
- Converted all uses of character* to character(len=)
- Removed many unused variables
- Added many _UNUSED_DUMMY() calls
- Converted statement functions to internal functions
Lowered optimization of ExtDataGridCompMod.F90 and ExtDataGridCompNG.F90 to -O1 on Intel to speed build

Fixed

Fixed the lines order to get the right idle_worker in MultiGroupServer.F90
Corrected a typo for checking if fpp macro _FILE_ was previously defined.
Add call to initialize pFlogger layer for the unit tests.
Rename mpi_comm to comm in MAPL_HistoryGridComp.F90 to avoid GNU
- MPT bug at NAS
Fix problem with macros in base/MAPL_Resource.F90 uncovered while compiling with the NVIDIA Fortran compiler. The macros in MAPL_Resource.F90 had long lines which exceeded the line length limit of the NVIDIA compiler. Change the macros into include files (.h) with macros and Fortran code.

Removed

Deleted MAPL_HeapMod.F90. This file was doing crazy nonstandard things and is not used anywhere else. A new cleaner implementation based upon containers could be readily created if the functionality is ever missed.

What's Changed

Trajectory sampler by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2265
Fixes #2268 - rename geom subdir by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2269
Clean up more geom to field_utils by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2272
ReadForcing binary file converter by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2276
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2279
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2285
Update tile_formatter.py by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2288
Fixes #2290 - pflogger in unit tests by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2291
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2297
Feature/hack for ExtData for using G5NR files with sample inputs for AIST project by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2296
Feature/jk/doc check by @JulesKouatchou in https://github.com/GEOS-ESM/MAPL/pull/2301
Feature/atrayano/#2304 index user by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/2305
change for new EASE gridname in bcs by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2307
Read string attribute from netCDF variable by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2313
Feature/bmauer/markup docs in source by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2311
Update to BCs 11.2.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2316
Backport pfio changes from MAPL3 to enable tests by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2321
Update ESMA_cmake for Intel Fortran Rosetta support by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2323
Feature/tclune/reduce compiler warnings by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2324
Bump actions/checkout from 3 to 4 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/2328
Fix MPT + GNU bug at NAS by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2345
get back to main to get the right idle_worker by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2348
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2350
Tweak optimization for faster Intel Release build by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2354
Bugfix/wdboggs/convert mapl resource macros by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/2326
Cleanup more MAPL Intel Debug Messages by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2346
Trajectory sampler to ingest multiple IODA files via one route handle by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2353
Remove a few more unused variables by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2364
Feature/jk/docs by @JulesKouatchou in https://github.com/GEOS-ESM/MAPL/pull/2356
Feature/tclune/io bench by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2361
Feature/wjiang/vertical indices by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2210
Prepare for 2.41.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2369
Gitflow: Merge Develop into Main by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2370

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.40.4...v2.41.0

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.40.4

This is a patch release of MAPL 2.40 which has a attempted fix for using MAPL-as-a-library via find_package(MAPL). The issue seemed to be due to not having any find_dependencies() calls in the resulting mapl-import.cmake file created on installation so MAPL itself did not describe what it needed correctly.

This is zero-diff to v2.40.3

The libraries this version of MAPL is currently tested with are below. (This is a change since MAPL 2.39)

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.31.1

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fixed handling of MAPL dependencies for when find_package(MAPL) is used

What's Changed

Fix MAPL dependencies for MAPL-as-library in CMake by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2320

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.40.3...v2.40.4

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.40.3

This patch release of MAPL 2.40 has fixes for using the NAG compiler on Linux. MAPL 2.40.1 broke NAG compatibility with Linux when fixing for macOS. When using the NAG compiler with MAPL 2.40.3, you must use ESMA_cmake v3.31.1 as well for the right flags. Note that for Intel and GNU, this is a no-op change.

All tests show zero-diff to MAPL 2.40.2

The libraries this version of MAPL is currently tested with are below. (This is a change since MAPL 2.39)

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.31.1

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Changed

Update components.yaml
- ESMA_cmake v3.31.1 (Fixes for NAG)

Fixed

Undoing previous workaround for NAG + MAPL_Config.F90 in v2.40.1 which was a workaround was not portable to Linux. Instead, this uses changes in ESMA_cmake v3.31.1 for flags with NAG.
Updated FindESMF.cmake file to match that of ESMF v8.5.0

What's Changed

Fixes #2292 - NAG + Darwin issue for ESMF_Config by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2293
Update FindESMF.cmake file to match ESMF 8.5.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2295

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.40.2...v2.40.3

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.40.2

This is a patch release of MAPL 2.40 which fixes some missing TARGET attributes in some code detected by the NAG compiler.

All tests show it zero-diff to MAPL 2.40.0

The libraries this version of MAPL is currently tested with are below. (This is a change since MAPL 2.39)

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.31.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fixed missing TARGET attribute on dummy argument. NAG aggressively uses copy-in/copy-out which exposes these missing attributes. This fix probably did not find all - just the ones exercised by one failing test.

What's Changed

Fixes #2283 - NAG and dangling pointers by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2284

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.40.1...v2.40.2

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.40.1

This patch release of MAPL 2.40 has a minor workaround for using NAG which prevents reading values from ESMF Config files that have been set using SetAttribute().

All tests show it to be zero-diff to MAPL 2.40.0

The libraries this version of MAPL is currently tested with are below. (This is a change since MAPL 2.39)

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.31.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Workaround for NAG which prevents reading values from ESMF Config files that have been set using SetAttribute(). The immediate issue appears to be due to a wrong CPP conditional on `ESMFHASACHAR_BUG', but it is not immediately clear if this is due to recent changes in ESMF or some change in NAG. Probably ESMF though. Once the ESMF core team analyzes we will potentially update this fix.

What's Changed

Fixes #2274 by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2277
Prepare for 2.40.1 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2280

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.40.0...v2.40.1

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.40.0

This minor release of MAPL includes many new features as well as new requirements for building.

The main new feature is the ability of ExtData to now fill variables on MAPL "tile" grids as well as the ability for ExtDataDriver.x to run on "tile" grids.

Also, with this version of MAPL, we now require ESMF 8.5.0 because MAPL has now replaced yaFyaml for YAML support with ESMF_HConfig. Per the release notes:

One major new development available with 8.5.0 is the addition of a hierarchical configuration class: ESMF_HConfig. This class provides YAML 1.2 support through the ESMF Fortran API. The ESMFHConfig class integrates with the existing configuration class ESMFConfig for backward compatibility, and allows ESMF user code to seamlessly access, modify, and create information in YAML format. This new capability is leveraged within ESMF and NUOPC to provide a YAML alternative when specifying ESMF_Initialize() parameters, NUOPC attribute, petList, or run sequence information.

Note that MAPL 2.40 now has new requirements for building. MAPL now requires:

ESMF 8.5.0
gFTL 1.10.0
gFTL-shared 1.6.1
fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Of these, only ESMF and gFTL-shared are hard "code will not build" requirements. However, the other GFE libraries minimum versions were updated to latest versions to capture bugfixes.

Also, since we now use ESMFHconfig for YAML support in MAPL, yaFyaml is no longer used. Likewise, we have deprecated FLAP use and by default `BUILDWITH_FLAPisNO`.

The libraries this version of MAPL is currently tested with are below. (This is a change since MAPL 2.39)

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.5.0 (required)
- GFE 1.11.0
- gFTL 1.10.0
- gFTL-shared 1.6.1
- pFUnit 4.7.3 (optional)
- fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.31.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Add ability of ExtData to fill variables on MAPL "tile" grids.
Added print of regrid method during History initialization
Added ability to use an ESMF.rc file to pass in pre-ESMF_Initialize options to ESMF (see ESMF Docs for allowed flags.
- NOTE: File must be called ESMF.rc
Added ability to run ExtDataDriver.x on a MAPL "tile" grid
Add ability to introduce a time-step delay in ExtDataDriver.x to simulate the timestep latency of a real model
Added a MAPL_Sleep function, equivalent to some vendor supplied but non-standard sleep function
sampling IODA file with trajectory sampler (step-1): make it run
Convert ExtData to use ESMF HConfig for YAML parsing rather than YaFYAML
- Set required ESMF version to 8.5.0
Add StationSamplerMod for station sampler
Added ReplaceMetadata message and method to replace oserver's metadata
Added field utilities to perform basic numeric operations on fields
Update arithemetic parser to work with any rank and type of ESMF fields
For ExtDataDriver.x only, added logging config to Tests/ExtDataDriverMod.F90 to enable Logger there
Added new fill option and run mode for ExtDataDriver.x

Changed

Updates to GFE library dependency
- Require gFTL v1.10.0
- Require gFTL-shared v1.6.1
- Require fArgParse v1.5.0
- Require pFlogger v1.9.5
- Removed yaFyaml as dependency
Updated programs using FLAP for command line parsing to use fArgParse instead
Updated components.yaml to use Baselibs 7.14.0
- ESMA_env v4.9.1 → v4.19.0
- Baselibs 7.14.0
  - esmf v8.5.0
  - GFE v1.11.0
  - curl 8.2.1
  - HDF5 1.10.10
  - netCDF-C 4.9.2
  - netCDF-Fortran 4.6.1
  - CDO 2.2.1
  - NCO 5.1.7
- Move to MPT 2.28 at NAS, and other various changes for TOSS4 at NAS
- Remove Haswell from build.csh
- ESMA_cmake v3.28.0 → v3.31.0
- Clean up for TOSS4 changes at NAS
- Add QUIET_DEBUG flag
- Suppress some common warnings with Intel Debug
Make the GEOSadas CI build separate as it often fails due to race conditions in GSI
Update CI to use BCs v11.1.0 and Baselibs 7.14.0
Updates to support building MAPL with spack instead of Baselibs
- Add FindESMF.cmake file to cmake directory (as it can't easily be found via spack)
- Move CMAKE_MODULE_PATH append statement up to find FindESMF.cmake before we find_package(ESMF)
- Default BUILD_WITH_FLAP to OFF as we don't build it in spack
- Explicitly build GEOSadas in CI with -DBUILD_WITH_FLAP=ON as GEOSadas is still behind in moving to use fArgParse

Fixed

Created cubed-sphere grid factory with files split by face
Removed unneeded and confusing default in History Grid Comp (see #2081)
Fixes in CMake for fArgParse transition

Deprecated

Deprecate the use of FLAP for command line parsing in favor of fArgParse. FLAP support will be removed in MAPL 3

What's Changed

Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2140
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2156
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2164
Move GEOSadas CI build to separate job by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2165
create cubed-sphere grid from files split by face by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2159
Update to ESMA_env 4.17.0, move from FLAP to fArgParse by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2068
Bump mheap/github-action-required-labels from 4 to 5 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/2179
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2181
Fixes #2147 field operations by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2160
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2189
ExtDataDriver.x updates for benchmarking by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2191
Add Logging config to Tests/ExtDataDriverMod.F90 by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2175
add ReplaceMetadata message and method for pfio by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2186
Feature/bmauer/fixes #2149 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2196
Update CI BCs to v11.1.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2203
station sampler by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2176
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2208
Fixes #2081. Remove unneeded and confusing default in History by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2211
Move ExtData2G to HConfig by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2218
Trajectory sampler for IODA file: step-1 by @metdyn in https://github.com/GEOS-ESM/MAPL/pull/2220
Require ESMF 8.5.0 and 8.5.0b22 at least by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2221
Fixes for fargparse use in CMake by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2222
Temporary action fix for push to dev by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2223
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2227
Feature/bmauer/extdatadriver delay by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2237
GitFlow: Handmerge main into develop - 2023-Jul-18 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2242
Get ExtDataDriver.x running on tiles by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2246
Fixes #2133. Add ability to set ESMF Logging mode at Run Time by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2233
Updates to allow building MAPL with Spack instead of Baselibs by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2229
Fixes #2244. Add print of regrid method to history init by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2245
Feature/bmaure/extdata on tiles by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2252
Update to Baselibs 7.14.0 (ESMF 8.5.0, GFE 1.11.0) by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2255
Prepare for MAPL 2.40.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2257
GitFlow: Merge develop into main by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2258

New Contributors

@metdyn made their first contribution in https://github.com/GEOS-ESM/MAPL/pull/2175

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.39.7...v2.40.0

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.39.7

This is a patch release of MAPL that fixes an issue so the pFIO MultigroupServer does not allow a file written by multiple processes at the same time.

All testing shows it zero diff to MAPL 2.39.6

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fix a bug so that MultigroupServer does not allow a file written by multiple processes at the same time.

What's Changed

Fix a bug so that MultigroupServer does not allow a file written by m… by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2238

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.39.6...v2.39.7

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.39.6

This patch release of MAPL 2.39 fixes issues with the tripolar grid and with the time_ave_util.x utility.

All testing shows it zero-diff to MAPL 2.39.5.

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Changed

Relaxed restriction in the tripolar grid factory so that grids can be made even when the decomposition deos not evenly divide the grid dimension so that the factory can be used in utilities where the core count makes such a condition impossible to satisfiy

Fixed

Fix a bug in time_ave_util.x so that it can work with files with no vertical coordinate

What's Changed

fixes #2232 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2234
Fixes for 2.39.6 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2239

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.39.5...v2.39.6

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.39.5

This is a patch release of MAPL has a fix for HISTORY (see #2058). Namely, a user would specify an alias in HISTORY.rc for a variable with a single bin/ungridded dimension and the alias would be ignored. So before this: 'CA.brEXTTAU' , 'CA.br' , 'BREXTTAU' , would lead to output of CA.brEXTTAU001 instead of BREXTTAU or BREXTTAU001.

In MAPL 2.39.5, this will now result in a variable called BREXTTAU without the 001. If a user desires that name, they can update the alias in HISTORY.

Beyond that fix, this is zero-diff to MAPL 2.39.4 (all other HISTORY and the state is the same)

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fixed logic in generating the names of the split fields. If the alias field in the History.rc has separators (;), each substring is used to name the resulting fields. If there are no separators, this will be the exact name of the first split field

What's Changed

Fixes #2038. Cleaned the rules for split field names by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/2226

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.39.4...v2.39.5

- Fortran
Published by mathomp4 over 2 years ago

MAPL - MAPL 2.39.4

This patch release of MAPL 2.39 fixes a climatology bug in ExtData2G (see #2192 for more information).

All testing with GEOSgcm shows this to be zero-diff to v2.39.3

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Added bug fix when using climatology option in ExtData2G under certain scenarios

What's Changed

Fixes #2192. Fix ExtData2G Climatology bug by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2207

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.39.3...v2.39.4

- Fortran
Published by mathomp4 almost 3 years ago

MAPL - MAPL 2.39.3

This patch version of MAPL 2.39 fixes a bug when performing vertical regridding in History when the output grid cannot be decomposed so that every core has a DE.

This is zero-diff to v2.39.2 save for cases that encountered the bug.

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fixed a bug when performing vertical regridding in History when the output grid cannot be decomposed so that every core has a DE

What's Changed

Feature/jkouatch/ford doc v01 by @JulesKouatchou in https://github.com/GEOS-ESM/MAPL/pull/2162
CMake improvements by @scivision in https://github.com/GEOS-ESM/MAPL/pull/2075
fixes #2187 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2188

New Contributors

@scivision made their first contribution in https://github.com/GEOS-ESM/MAPL/pull/2075

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.39.2...v2.39.3

- Fortran
Published by mathomp4 almost 3 years ago

MAPL - MAPL 2.39.2

This patch version of MAPL fixes a bug reported by @AlexanderRichert-NOAA with builds of MAPL that do not build with support for pFlogger. There were unprotected find_package(PFLOGGER REQUIRED) calls that tripped up these styles of builds.

This is zero-diff to v2.39.1

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fix unintentional PFLOGGER requirements in geom and pfio

What's Changed

Protect required pflogger in CMake by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2153

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.39.1...v2.39.2

- Fortran
Published by mathomp4 almost 3 years ago

MAPL - MAPL 2.39.1

This patch release of MAPL 2.39 fixes the handling of ungridded dims for averaged collections. When the grid rank is 2, the code erroneously assigned vertical dimension to the ungridded dims

All testing shows it zero-diff to MAPL 2.39.0 when the bug is not encountered (which is rare)

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fixed the handling of ungridded dims for averaged collections. When the grid rank is 2, the code erroneously assigned vertical dimension to the ungridded dims

What's Changed

Fixes #2138. Properly accounts for vertical dimension when grid rank is by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/2139

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.39.0...v2.39.1

- Fortran
Published by mathomp4 almost 3 years ago

MAPL - MAPL 2.39.0

This is a minor release of MAPL with new features and fixes. The new features are:

Added minimal support for NetCDF "groups".
New feature to allow for single component testing as code is refactored
Added module to process datetime strings from NetCDF to ESMF_Time and ESMF_TimeInterval variables and vice versa

Most of these features are for internal development at the moment.

Also some fixes were made:

READ_RESTART_BY_FACE has been fixed and now can read restarts from full CS grids as well as restarts that have been separated by face via WRITE_RESTART_BY_FACE. The current implementation requires that both num_readers and num_writers must be multiple of 6.
'config.py' has been fixed. python3 requires // for integer divides.

All testing with GEOSgcm shows this to be zero-diff to MAPL 2.38

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set `-DUSE_F2PY=OFF`

From `CHANGELOG.md`

Added

Added minimal support for NetCDF "groups". getvar* can now optionally specify a group_name and the data will be returned from the named group rather than the default group.
New feature to allow for single component testing as code is refactored
- Created Comp_Testing_Driver.F90 in Apps
- Created subset_fields.py to grab a subset of columns
- Created shell script to perform subsetting, run the driver, and evaluate differences
- Instructions for use can be viewed under Apps/CompTestingInfo.md
Added module to process datetime strings from NetCDF to ESMF_Time and ESMF_TimeInterval variables and vice versa

Fixed

READ_RESTART_BY_FACE has been fixed and now can read restarts from full CS grids as well as restarts that have been separated by face via WRITE_RESTART_BY_FACE. The current implementation requires that both num_readers and num_writers must be multiple of 6.
'config.py' has been fixed. python3 requires // for integer divides.

What's Changed

Process NetCDF datetimes to ESMFTime and ESMFTimeInterval and vice versa by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/2121
fix the option READRESTARTBY_FACE by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2119
Component Testing Framework by @nataliepatten in https://github.com/GEOS-ESM/MAPL/pull/2059
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2124
fix integer divides in config.py by @patricia-nasa in https://github.com/GEOS-ESM/MAPL/pull/2128
Fixes #2126 - minimal support for netcdf groups by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2129
Prepare for 2.39.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2132
GitFlow: Merge develop into main for 2.39 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2135

New Contributors

@patricia-nasa made their first contribution in https://github.com/GEOS-ESM/MAPL/pull/2128

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.38.1...v2.39.0

- Fortran
Published by mathomp4 almost 3 years ago

MAPL - MAPL 2.38.1

This is a patch release of MAPL that introduces a new feature needed by some MAPL users. It adds a new runtime option:

RUN_AT_INTERVAL_START: to force component alarms ring at start of the interval. The default the current behavior still to ring at the end.

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Added new option "RUNATINTERVAL_START:" so force component alarms ring at start of the interval, default still to ring at the end

What's Changed

Run at start option by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2123

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.38.0...v2.38.1

- Fortran
Published by mathomp4 almost 3 years ago

MAPL - MAPL 2.38.0

This is a minor release of MAPL with many new features and fixes.

The new features are:

Printed time to write files to the disk in MultiGroupServer (enabled via logging.yaml using MAPL.pfio)
Added merge function to Filemetadata to merge two meta objects
Added support for "DEPENDSON" and "DEPENDSONCHILDREN" for exportspecs. The typical usage on this feature is when the calculation of a variable involves other export variables, either from the same component (DEPENDS_ON specifies the list on such variables), or in the children (in this case the expectation is that all of the children have the SAME export). In both cases MAPL performs automatic allocation of these export variables.
Added support for use of pFlogger simTime in logging (only if -DBUILD_WITH_PFLOGGER=ON)
- Note: Due to bug in pFlogger v1.9.3 and older, you must specify a dateFmt in your logging configuration file in the formatter when using simTime (see pFlogger issue #90). This is fixed in pFlogger v1.10.0
Add geom subdirectory and contents for MAPL Geom framework

All testing shows it to be zero-diff to MAPL 2.37 in re GEOSgcm.

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

Printed time to write files to the disk in MultiGroupServer
Added merge function to Filemetadata to merge two meta objects
Added support for "DEPENDSON" and "DEPENDSONCHILDREN" for exportspecs. The typical usage on this feature is when the calculation of a variable involves other export variables, either from the same component (DEPENDS_ON specifies the list on such variables), or in the children (in this case the expectation is that all of the children have the SAME export). In both cases MAPL performs automatic allocation of these export variables.
Added support for use of pFlogger simTime in logging (only if -DBUILD_WITH_PFLOGGER=ON)
- Note: Due to bug in pFlogger v1.9.3 and older, you must specify a dateFmt in your logging configuration file in the formatter when using simTime (see pFlogger issue #90). This is fixed in pFlogger v1.10.0
Add geom subdirectory and contents for MAPL Geom framework

Changed

Add logic to GriddedIO class so that if an uninitialized time object is passed, the resulting file will not depend on time
Make sure the pfio files are closed when the time and speed appear in logfile
Enable more tests in CircleCI

Fixed

Move ioserver_profiler%stop call to the right place
Caught an untrapped error condition when writing to NetCDF

What's Changed

Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2053
Bump mheap/github-action-required-labels from 3 to 4 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/2054
Add support for pFLogger simTime by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2060
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2065
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2077
Add "geom" framework by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/2070
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2083
Re-enable many CircleCI tests by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2063
Handmerge main to develop 2023Apr25 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2096
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2098
Bump CircleCI-Public/trigger-circleci-pipeline-action from 1.0.7 to 1.1.0 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/2085
Feature/atrayano/depends on by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/2100
Add subroutine to merge Filemetadata by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2092
print files and writing time in MultiGroupServer by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2087
Exchange the order to make sure files are closed by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2106
Fixes #2072 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2073
trap the nf90_open error by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2071
move the call ioserver_profiler%stop to the right place by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2109
Prepare for MAPL 2.38.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2111
GitFlow: Merge Develop into Main for release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2116

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.37.3...v2.38.0

- Fortran
Published by mathomp4 almost 3 years ago

MAPL - MAPL 2.37.3

This patch release of MAPL 2.7 has fixes for the handling of vector regridding for a subdomain with no-DE. It also fixes a no-DE case related to vertical regridding.

All testing with GEOSgcm shows it to be zero-diff to MAPL 2.37.2.

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Fixed the handling of vector regridding for a subdomain with no-DE.
Fixed the no-DE case related to vertical regridding.

What's Changed

Fixes the regridding of vertor field with subdomains without DE. Also by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/2093
Prepare for 2.37.3 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2095

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.37.2...v2.37.3

- Fortran
Published by mathomp4 almost 3 years ago

MAPL - MAPL 2.37.2

This patch release of MAPL 2.37 has a fix to avoid a hang in MAPL_GetGlobalHorzIJIndex

All testing shows it zero-diff with GEOSgcm

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Pulled call MAPLGridGetCorners out of the condition to avoid hang in MAPLGetGlobalHorzIJIndex

What's Changed

Pulled call MAPL_GridGetCorners out of the condition to avoid hang in… by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2079

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.37.1...v2.37.2

- Fortran
Published by mathomp4 almost 3 years ago

MAPL - MAPL 2.37.1

This release of MAPL has fixes for building with the NAG compiler.

All tests show it is zero-diff for GEOSgcm

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Fixed

Various nonstandard uses of Fortran caught by NAG compiler
Various workarounds for NAG 7.1.113 where the compiler is wrong.

What's Changed

Feature/jkouatch/new readme md by @JulesKouatchou in https://github.com/GEOS-ESM/MAPL/pull/2064
Fixes #2074 - NAG (re) port by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2076

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.37.0...v2.37.1

- Fortran
Published by mathomp4 almost 3 years ago

MAPL - MAPL 2.37.0

This release of MAPL has some bug fixes relating to stretched grid use. It also has a new feature in History to allow the accumulation in non-instantaneous collections to be reset independently of the writing frequency if requested.

Testing shows GEOSgcm is zero-diff compared to v2.36.0

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Added

New feature in History to allow the accumulation in non-instantaneous collections to be reset independently of the writing frequency if requested.
new macro _RETURN_IF(cond) to provide a succinct early return in procedures with return codes.

Fixed

Fixed bug in CubedSphereGridFactory when constructing a grid from a file
Cleaned up cubed-sphere grid factory and NCIO to produce files with consistent capitalization and types for the stretching factor

What's Changed

Fixes #2034 - RETURN_IF macro by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2035
Missing endif by @tclune in https://github.com/GEOS-ESM/MAPL/pull/2037
Bump CircleCI-Public/trigger-circleci-pipeline-action from 1.0.6 to 1.0.7 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/2042
Feature/bmauer/cleanup cpl alarms by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2040
Fixes for Ford Docs. Turn off graphs by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2038
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2046
Hotfix/bmauer/fixes #1977 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2048
Prepare for MAPL 2.37 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2050
GitFlow: Merge develop into main for 2.37 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2052
Use GitHub Action to clean up Ford doc building by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2047

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.36.0...v2.37.0

- Fortran
Published by mathomp4 almost 3 years ago

MAPL - MAPL 2.36.0

This release of MAPL has a few updates.

Added updates to MAPL_GetResource to allow it to print arrays when called with the config interface
Adds a new XY grid factory to create regional grids on any input set of 2D lons and lats. NOTE: This grid factory is experimental and the API may change or it might be superseded by another grid factory. It was added here for GEOSgcm development needs. If you would like to use this, please contact us.
Converted files in Python/MAPL to Python 3. Note that if you set -DUSE_F2PY=OFF this does not matter. If you use this, you must use ESMA_cmake v3.28.0.

Testing with GEOSgcm shows this to be zero-diff.

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.8.1
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.1 (ESMF 8.4.0 required, but 8.4.1 recommended as it has a bug fix)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.28.0

We recommend most external users set `-DUSE_F2PY=OFF`

From `CHANGELOG.md`

Added

Added config array overload to MAPL_GetResource
Implemented new generic XY grid factory to create regional grids on any input set of 2D lons and lats
- NOTE: This grid factory is experimental and the API may change or it might be superseded by another grid factory

Changed

Updated components.yaml to match GEOSgcm v10.25.1
- ESMA_env v4.8.0 → v4.9.1 (Move to Baselibs 7.8.1: ESMF v8.4.1)
- ESMA_cmake v3.24.0 → v3.28.0 (Detection of additional sites, updated Intel Fortran flags, updates for Python3 support)
Converted files in Python/MAPL to Python 3.
- NOTE 1: This will require changes to codes that call MAPL's Python layer.
- NOTE 2: If building with F2PY support, you will need to use ESMA_cmake v3.28.0 or later if using in a mixed Python 2/3 environment

What's Changed

Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1999
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2004
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2007
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2009
Closes #1453. Add config array overload to GetResource by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1686
Update to ESMAenv v4.9.1, ESMAcmake v3.27.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2011
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/2023
Feature/bmauer/general xy grid by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2020
Feature/jkouatch/new readme md by @JulesKouatchou in https://github.com/GEOS-ESM/MAPL/pull/2015
Convert MAPL/Python to Python 3 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1860
GitFlow: Merge Develop into main for 2.36.0 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2031

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.35.3...v2.36.0

- Fortran
Published by mathomp4 about 3 years ago

MAPL - MAPL 2.35.3

This patch release of MAPL has a bug fixe for handling of climatological emissions in ExtData2G when passing a year boundary. This release also contains preliminary Ford documentation for the MAPL API which can be found at https://geos-esm.github.io/MAPL/.

Testing shows this to be zero-diff for GEOSgcm (save for cases where the bug was triggered).

NOTE TO EXTERNAL USERS OF MAPL: This release of MAPL includes a code that is built with f2py. If you do not have a need for this code, it is recommended you set: -DUSE_F2PY=OFF when building MAPL. Even if you try to build the f2py code, it might fail anyway due to issues with the Python stack on the machine. ESMA_cmake has code that "tests" if f2py works. If it doesn't, it should failover gracefully.

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.7.0
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.0 (Required)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

From `CHANGELOG.md`

Fixed

Fixed bug in climatologies with ExtDataV2 when wrapping around the year

Added

Added Ford documentation

What's Changed

Add Ford documentation by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/2006
Hotfix/bmauer/fixes #2018 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2022

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.35.2...v2.35.3

- Fortran
Published by mathomp4 about 3 years ago

MAPL - MAPL 2.35.2

This patch release of MAPL has a bug fixes for handling of climatological emissions in ExtData2G as well as additional fixes for passing grids through the CAP as done by UFS users.

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.7.0
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.0 (Required)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

From `CHANGELOG.md`

Changed

Updated ExtData test case2 to handle a wider range of test times for more robust testing

Fixed

Fixed bug in climatology hanlding of data in ExtDataV2 that occurred depending on the start date of the application relative to the length of the application run time
Fixed setgrid. The cfroot is not created when it is called. Instead, use config from CAP.rc

Removed

Removed test case 2 for ExtDataV1 as there as an apparent bug in climatologies that has been fixed for ExtDataV2 but there appears to be a different but in ExtDataV1 that causes the extended case 2 to fail

What's Changed

fixes #1991 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/2001
fixed set_grid by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/2003

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.35.1...v2.35.2

- Fortran
Published by mathomp4 about 3 years ago

MAPL - MAPL 2.35.1

This patch release of MAPL has a bugfix when running with monthly history collections.

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.7.0
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.0 (Required)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

From `CHANGELOG.md`

Fixed

Fix issue when running with monthly history collections

What's Changed

Fixes #1997. Fix issue with monthly history by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1998

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.35.0...v2.35.1

- Fortran
Published by mathomp4 about 3 years ago

MAPL - MAPL 2.35.0

This minor release of MAPL has many new features and changes as detailed below. All testing with GEOSgcm has shown it to be zero-diff.

NOTE: This is zero-diff in regards to the state of GEOSgcm. Due to a bug fix in the bit-shaving algorithm, if you use nbits: in your History, it will be non-zero-diff for history output, see https://github.com/GEOS-ESM/MAPL/pull/1947

The libraries this version of MAPL is currently tested with are below. (No change since last release of MAPL)

Baselibs 7.7.0
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.0 (Required)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

From `CHANGELOG.md`

Added

Added subroutines to read char type in Netcdf
Added a subroutine addvariable to Netcdf4Fileformatter
Add a function to get the area of a spherical polygon to the spherical geometry module
Created layout independent version of the "DownBit"/"pFIO_ShaveMantissa" routines when running in MPI codes
Added subroutine MAPL_SunGetLocalSolarHourAngle() in base/MAPL_sun_uc.F90. This provides a convenient local solar hour angle diagnostic which will be used to detect local solar noon via the EXAMPLE OF USE in the subroutine header. See DESCRIPTION in code for more details. Provides the TRUE local solar hour angle (i.e., with equation of time included), but can also provide the MEAN value (without EOT) via FORCE_MLSHA=.TRUE. optional argument.
Add shavemantissa f2py code. This is used by AeroApps.
- NOTE: If you do not have a need for this code, build with -DUSE_F2PY=OFF. Note that even if you try to build the f2py code, it might fail anyway due to issues with the Python stack on the machine. ESMA_cmake has code that "tests" if f2py works. If it doesn't, it should failover gracefully.

Changed

Changed set_grid method so users have a chance to specify the grid type
Renamed get_regrid_method and translate_regrid_method to regrid_method_string_to_int and regrid_method_int_to_string respectively in RegridMethods.F90. This was done so we could add get_regrid_method to the AbstractRegridder. The new names more accurately reflect what the RegridMethods functions do.
Changed call to MAPL_SunOrbitCreate() inside MAPL_Generic.F90 to call to new function MAPL_SunOrbitCreateFromConfig(), the latter which get the orbital parameters from the MAPL state's Config. In this way no default orbital parameter values need appear in MAPL_Generic.F90. Rather, these default values are encapsulated where they belong in Sun_Mod in base/MAPL_sun_uc.F90 and are now explicitly named and commented on at the head of the module. This is a structural zero-diff change.
Created MAPL.profiler logger and moved throughput, per-component, and global timers to use it
Moved most of the MAPLGetResource generic subroutine to a new module, MAPLResourceMod, in base. The specific subroutines remain in MAPLGenericMod to maintain the interface in one module, but most of the functionality is in MAPLResourceMod now.
Update "build like UFS" CI test
Converted the History Gridded Component to use _RC and _STAT macros

Fixed

Changed the type of output counters to INT64 for large file.
Tested optional arguments arrdes in MAPL_WriteVars
Added the correct values to halo corner of LatLon grid
Fixed range in halo of LatLonGridFactory
Corrected issue with native output having metadata saying it was bilinearly regridded. Now sets these files to have regrid_method: identity
Fix bug in mapl_acg.cmake that caused unnecessary rebuilds
Fixed error handling for refactored MAPL_GetResource

What's Changed

Update MAPLsunuc.F90 by @adarmenov in https://github.com/GEOS-ESM/MAPL/pull/1900
Bump actions/checkout from 3.2.0 to 3.3.0 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1905
fix typo in the range of halo in LatLonGridfactory by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1909
Feature/pnorris/#1882 add local solar hour angle diagnostic by @dr0cloud in https://github.com/GEOS-ESM/MAPL/pull/1913
correct values in the halo corner of LatLon grid by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1911
Feature/pnorris/#1915 all MAPL orbital parameters now encapsulated in SunMod in MAPLsun_uc.F90 by @dr0cloud in https://github.com/GEOS-ESM/MAPL/pull/1920
Fixes #1912. Fixes for ACG Cmake code by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1916
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1927
Fixes #1888. Set regrid_method to identity for native collections by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1922
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1936
Refactor MAPL_GetResource by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/1943
fixes #1941 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1947
Update build like UFS CI test by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1950
Bugfix/wdboggs/fix refactor error by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/1962
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1965
test optional argument arrdes before using it by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1940
Feature/wjiang/large output by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1944
Fixes #1952. Remove _VERIFY from History GC by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1953
Create MAPL.profiler logger by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1938
Bump devops-infra/action-pull-request from 0.5.3 to 0.5.5 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1971
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1974
Add shavemantissa f2py code by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1945
Add new routine to spherical geometry package by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1984
add variable through file formatter by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1978
fixed and added subroutines to read and write char type in Netcdf file by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1986
Let users specify the grid type by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1989
Prepare for 2.35.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1992
GitFlow: Merge Develop into main for 2.35 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1996

New Contributors

@adarmenov made their first contribution in https://github.com/GEOS-ESM/MAPL/pull/1900

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.34.3...v2.35.0

- Fortran
Published by mathomp4 about 3 years ago

MAPL - MAPL 2.34.3

This patch release of MAPL 2.34 fixes a bug in ExtData2G when used in "Replay" mode in the GEOSgcm

All testing shows zero-diff.

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.7.0
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.0 (Required)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

From `CHANGELOG.md`

Added

Added test cases 28 and 29 to ExtData testing framework

Fixed

Fix bug in ExtData2G when used in "Replay" in the GEOSgcm

What's Changed

Update README.md by @aoloso in https://github.com/GEOS-ESM/MAPL/pull/1964
Fixes #1957 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1972

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.34.2...v2.34.3

- Fortran
Published by mathomp4 about 3 years ago

MAPL - MAPL 2.34.2

This release of MAPL fixes a bug in ExtDataDriver.x to re-enable its use of the multigroup oserver.

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.7.0
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.0 (Required)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

From `CHANGELOG.md`

Fixed

Fixed bug with ExtDataDriver.x when enabling oserver on dedicated resources

What's Changed

Reenable use of multi group server in ExtDataDriver.x by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1934

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.34.1...v2.34.2

- Fortran
Published by mathomp4 about 3 years ago

MAPL - MAPL 2.34.1

This patch of MAPL 2.34 fixes an issue (#1923) concerning WRITE_RESTART_BY_OSERVER.

All testing is zero-diff with GEOSgcm save for cases with WRITE_RESTART_BY_OSERVER: YES where it fixes a bug with that code path.

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.7.0
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.0 (Required)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

From `CHANGELOG.md`

Fixed

Fixed bug when writing 4D fields to checkpoint files with the PFIO server via the WRITERESTARTBY_OSERVER option

What's Changed

fixes issue #1923 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1925

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.34.0...v2.34.1

- Fortran
Published by mathomp4 about 3 years ago

MAPL - MAPL 2.34.0

This release of MAPL contains many new features and updates. Among the changes are:

Fixed the naming convention of the split field name (#1874). For this, before on split fields in History you'd get out DU, DU002, DU003. But now MAPL will do DU001, DU002, DU003
Updates for better support of State Specs in GOCART (see https://github.com/GEOS-ESM/GOCART/issues/202)
1. Support for * expansion in long names
2. Support to fill %d in long names
Various updates for ongoing OpenMP support with MAPL and Gridded Components
Added requirement for ESMF 8.4.0 in CMake
Minor changes for stricter Debug builds

NOTE: Updates 1 and 2 above will change History both variable names and metadata. The data will be zero-diff, but comparators will be confused by the name change on split fields as well as different metadata if tested for.

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.7.0
- netcdf-c 4.9.0 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.0 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.4.0 (Required)
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

From `CHANGELOG.md`

Added

Added MAPL_find_bounds => find_bounds and MAPL_Interval => Interval to MAPL.F90 for use when doing component level OpenMP
Added requirement for ESMF 8.4.0 in find_package() call
Modified Apps/MAPLGridCompSpecsACG.py to use the * capability for LONG_NAME like SHORT_NAME
Added CMake code to apply stricter debug flags when building MAPL as Debug
Added subroutine MAPLMethodAdd to MAPLGeneric.F90
Added subroutines getcallbacks and copycallbacks to OpenMP_Support.F90
- These added subroutines are to support "callback" procedures when inside OpenMP parallel region for mini states for component level threading.
Added ability to expand "%d" in the long name when we split fields for History

Changed

Update components.yaml
- ESMA_cmake v3.24.0 (defines stricter debug flags for Intel, preliminary support for ifx)
Reduced amount of CI tests to reduce cost
Added message to label enforcer (requires v3)
Fixed the naming convention of the split field name (#1874)
- NOTE: This could change the name of any field in HISTORY using field splitting. The data will be the same, but the name will be different.

Fixed

Fixed procedure "find" in CFIOCollection.F90 that was missing a _RETURN(_SUCCESS) at the end

What's Changed

Bump actions/checkout from 3.1.0 to 3.2.0 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1861
Feature/aoloso/merge v10.23.0 mstrf gwd hybrid by @aoloso in https://github.com/GEOS-ESM/MAPL/pull/1859
Update Label Enforcer and Changelog Enforcer for Dependabot by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1862
Enforce ESMF version by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1857
fixes #1869 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1870
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1872
Fixes #1874. This fixes the convention for naming the split field nam… by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/1875
Reduce number of CI tests by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1879
Feature/wdboggs/extend star long name by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/1881
Bump CircleCI-Public/trigger-circleci-pipeline-action from 1.0.5 to 1.0.6 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1884
Add stricter debugging flags when building MAPL as Debug by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1871
Bump mheap/github-action-required-labels from 2 to 3 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1892
Extend OMP layer to support ESMF callback states by @aoloso in https://github.com/GEOS-ESM/MAPL/pull/1889
Update to ESMA_cmake 3.24, Update Changelog for 2.34 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1894
Fixes #1878. The adds ability to expand %d in the long name, when we … by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/1899
Update changelog for 2.34 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1901
GitFlow: Merge develop into main for 2.34 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1898

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.33.0...v2.34.0

- Fortran
Published by mathomp4 about 3 years ago

MAPL - MAPL 2.33.0

This release of MAPL has a bugfix to allow ExtData2G to run with GNU compilers. Also, has a fix to one of the tutorials.

All testing shows this is zero-diff for GEOSgcm.

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.7.0
- netcdf-c 4.9.0
- netcdf-fortran 4.6.0
- ESMF 8.4.0
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

From `CHANGELOG.md`

Added

Added new test case for ExtData2G to test multiple input files

Fixed

Fixed bug in tutorial case parentnochildren when attempting recommended exercises
Implemented workaround for gfortran runtime issue with YafYaml when parsing multiple ExtData yaml files for ExtData2G

What's Changed

Fixes #1846 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1849
Fixes #1847 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1850
Prepare for 2.33 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1852
GitFlow: Merge Develop into Main for 2.33 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1854

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.32.0...v2.33.0

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.32.0

This release of MAPL adds a few new features:

Added new option to allow for gaps in datasets ingested by ExtDataNG (see #1789)
Added a new fArgParse command line parser. This will eventually replace the use of FLAP in MAPL3, and is now just optional in MAPL2. Requires fArgParse v1.4.1
Added subroutines for reading 4d integers in NetCDF4_FileFormatter
Updated MAPL to use Baselibs 7.7.0. This has the fArgParse version needed for the parser (see above), as well as has newer netCDF to enable use of the quantize feature.

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.7.0
- netcdf-c 4.9.0
- netcdf-fortran 4.6.0
- ESMF 8.4.0
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES, default=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=YES)

From `CHANGELOG.md`

Added

Add fArgParse CLI argument parser
Added subroutines for reading 4d integers in NetCDF4_FileFormatter
Added new option to allow for gaps in datasets ingested by ExtDataNG

Changed

Updated to ESMA_cmake v3.21.0
- Adds support for a generic x86_64 processor for GNU
Updated to ESMA_env v4.8.0
- Baselibs v7.7.0
  - fArgParse v1.4.1
  - pFUnit v4.6.1
Move to use GitHub Actions for label enforcement

What's Changed

Feature/bmauer/fixes #1789 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1797
Move to use GitHub Action for Label Enforcement by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1840
add 4d integer reading subroutine to formatter by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1838
Fixes #1756. Add fArgParse CLI parser by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1758
GitFlow: Merge Develop into Main for 2.32.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1844

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.31.0...v2.32.0

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.31.0

This release of MAPL has many new features and updates including:

Fixes for the NVIDIA compiler
New function to remove variable from FileMetadata object
Added file name to errors when reading netCDF files
Added capability to Automatic Code Generator to detect inconsistencies in spec files at build time
Add support for netCDF quantize.
- Note this requires netCDF-C v4.9.0 and netCDF-Fortran v4.6.0, but our CMake does have a test to make sure the netCDF library was compiled with support. This test uses NETCDF_INCLUDE_DIRS and as such within GEOS requires the use of ESMA_cmake v3.20.0 or later to (possibly) succeed.
Added subroutine to calculate IJ indexes of given lats lons for cubed-sphere grid

The libraries this version of MAPL has been tested with are below.

Baselibs 7.5.0
- netcdf-c 4.8.1
- netcdf-fortran 4.5.4
- ESMF 8.3.0
- GFE 1.4.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.4.1 (optional)
- fArgParse 1.3.0 (optional)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES)

In order to use the new netCDF quantize support in MAPL, you need to use the equivalent to Baselibs 7.7.0 (which MAPL and GEOS will soon move to):

Baselibs 7.7.0
- netcdf-c 4.9.0
- netcdf-fortran 4.6.0
- ESMF 8.4.0
- GFE 1.8.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.6.1 (optional)
- fArgParse 1.4.1 (optional)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES)

From `CHANGELOG.md`

Fixed

Fixed the subroutine that removes a variable from FileMetadata Object
Defined real64 constants in consistent way
Workarounds for NVIDIA compiler

Added

Added a function to remove a variable from FileMetadata object.
Added assert to NetCDF4getvar.H to print variable name if data retrieval fails
Added to asserts in NetCDF4_get_var.H to print out file if there are error getting variables
Added capability to Automatic Code Generator to detect inconsistencies in spec files at build time
Add support for netCDF quantize.
- Note this requires netCDF-C v4.9.0 and netCDF-Fortran v4.6.0, but our CMake does have a test to make sure the netCDF library was compiled with support. This test uses NETCDF_INCLUDE_DIRS and as such within GEOS requires the use of ESMA_cmake v3.20.0 or later to (possibly) succeed.
Added subroutine to calculate IJ indexes of given lats lons for cubed-sphere grid

Changed

Updated to ESMA_cmake v3.20.0
- This is to support the NETCDF_INCLUDE_DIRS used in the quantize support test
Updated to ESMA_env v4.7.0
- This has many updates including moving to netCDF-C v4.9.0 and netCDF-Fortran v4.6.0. The other updates:
- Baselibs v7.6.0
  - ESMF v8.4.0
  - zlib 1.2.13
  - curl 7.86.0
  - netCDF-C 4.9.0
  - netCDF-Fortran 4.6.0
  - NCO 5.1.1
  - CDO 2.1.0
Removed some unneeded use statements in ExtDataGridCompNG.F90. This seemed to let this new quantize support build with Intel
Changed nbits internally to be nbits_to_keep. Note that externally, you still use nbits: in HISTORY.rc

What's Changed

Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1786
Bump devops-infra/action-pull-request from 0.5.1 to 0.5.2 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1790
Add status check after retrieving variable data from NetCDF file by @lizziel in https://github.com/GEOS-ESM/MAPL/pull/1792
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1801
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1804
Bump devops-infra/action-pull-request from 0.5.2 to 0.5.3 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1807
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1815
define real64 constants more consistently by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1799
Fixes #1800. Add file name to NC4 asserts by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1813
Fixes for NVIDIA by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1823
add function to remove a variable from meta data by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1825
Bugfix/wjiang/rm var from meta by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1827
Add capability to check MAPL Spec options (fields) to Automatic Code Generator (ACG) by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/1829
add subroutine to calculate global IJ index for cubed sphere grid by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1782
Add netCDF quantize support by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1810
GitFlow: Merge develop into main for release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1835

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.30.3...v2.31.0

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.30.3

This patch release of MAPL 2.30 fixes a bug when writing fields in History with ungridded dimension when the split option is not requested.

This is zero-diff for GEOS except (obviously) when the bug was encountered in History output.

The libraries this version of MAPL has been tested with are below.

Baselibs 7.5.0
- netcdf-c 4.8.1
- netcdf-fortran 4.5.4
- ESMF 8.3.0
- GFE 1.4.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.4.1 (optional)
- fArgParse 1.3.0 (optional)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES)

From `CHANGELOG.md`

Fixed

Fixed bug when writing fields in History with ungridded dimension when the split option is not requested

What's Changed

fixes #1811 bug with output variables with ungridded dims by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1814

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.30.2...v2.30.3

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.30.2

This patch release of MAPL fixes an issue where when a grid is received from outside of MAPL (e.g., NOAA UFS), MAPL must provide a mechanism to specify a grid-type for internal processing. Add an option to set_grid to set GridType explicitly.

The libraries this version of MAPL has been tested with are below.

Baselibs 7.5.0
- netcdf-c 4.8.1
- netcdf-fortran 4.5.4
- ESMF 8.3.0
- GFE 1.4.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.4.1 (optional)
- fArgParse 1.3.0 (optional)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES)

From `CHANGELOG.md`

Fixed

When a grid is received from outside of MAPL (e.g., NOAA UFS), MAPL must provide a mechanism to specify a grid-type for internal processing. Add an option to set_grid to set GridType explicitly.

What's Changed

Add option to set_grid to set GridType explicitly. by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/1794
Prepare for 2.30.2 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1802

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.30.1...v2.30.2

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.30.1

This patch release of MAPL has a fix for building time_ave_util.x at NAS with MPT+GNU.

The libraries this version of MAPL has been tested with are below.

Baselibs 7.5.0
- netcdf-c 4.8.1
- netcdf-fortran 4.5.4
- ESMF 8.3.0
- GFE 1.4.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.4.1 (optional)
- fArgParse 1.3.0 (optional)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES)

From `CHANGELOG.md`

Fixed

Fix for building time_ave_util.x at NAS using MPT

What's Changed

Fixes #1784. Fix build issue at NAS by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1785

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.30.0...v2.30.1

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.30.0

This release of MAPL adds a new utility, time_ave_util.x that is a refactoring of the current time_ave.x currently built as part of GMAO_Shared. The previous utility only worked on Lat-Lon grids, but the new one works with Lat-Lon, Cubed-Sphere, and Tripolar grids and supports regridding to a different grid if the user desires that the averaging be performed and output on a different grid than the datasets grid.

The libraries this version of MAPL has been tested with are below.

Baselibs 7.5.0
- netcdf-c 4.8.1
- netcdf-fortran 4.5.4
- ESMF 8.3.0
- GFE 1.4.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.4.1 (optional)
- fArgParse 1.3.0 (optional)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES)

From `CHANGELOG.md`

Added

Introduced a new time averaging utility code to perform time averages of datasets

Changed

Moved Regrid_Util.F90 to the Apps directory

What's Changed

New Time Averaging Util by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1776
GitFlow: Merge Develop into Main for 2.30.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1778

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.29.0...v2.30.0

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.29.0

This release of MAPL has some minor fixes, changes and additions. All testing shows this release to be zero-diff with the GEOSgcm.

Notable additions are the option to pass in vertical metadata to FieldBundleWriter class for output files, the ability to provide a procedure defining extra compiler flags to the FLAP CLI code, and adding a coupled MOM6 run to the CI.

Also changes to the error handling macros, updates to ESMAenv and ESMAcmake, as well as changes needed for ongoing land restarts work.

The libraries this version of MAPL has been tested with are below.

Baselibs 7.5.0
- netcdf-c 4.8.1
- netcdf-fortran 4.5.4
- ESMF 8.3.0
- GFE 1.4.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.4.1 (optional)
- fArgParse 1.3.0 (optional)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES)

From `CHANGELOG.md`

Fixed

Add define for -Dsys${CMAKE_SYSTEM_NAME} to fix build issue with macOS and Intel (#1695)
Fix handling of return macros for programs and subroutines (#1194)

Added

Add Coupled MOM6 GCM run to CI (ifort only)
Added ability to pass in extra options to FLAP CLI arguments
Added option to pass vertical metadata to FieldBundleWriter class for output file
Expose FileMetaUtilities class MAPL_VerticalDataMod via "use MAPL"

Changed

Change argument arrdes of MAPL_Read and Write NC Var 3d to optional
Error codes in shared/MAPL_Error_Handling.F90 are now consistent with _FAILURE = 1 in include/MAPL_ErrLog.h
Updated `components.yaml
- ESMA_env v4.4.0 → v4.5.0 (Update for GMI builds)
- ESMA_cmake v3.18.0 → v3.19.0 (Add -save-temps to GNU debug, check if install prefix is writable)

What's Changed

Update error codes to match _FAILURE macro by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/1743
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1744
Add Coupled GCM run by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1749
Fixes #1695. Fix build failure with macOS and Intel by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1748
Add ability to pass extra arguments to FLAP by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1761
Fixes #1194. Fix return macros by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1760
Feature/bmauer/fixes/#1759 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1764
Feature/wjiang/add optional arrdes by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1757
Update to ESMAcmake v3.19.0 and ESMAenv v4.5.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1767
Prepare for MAPL 2.29.0 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1769
GitFlow: Merge Develop into Main for 2.29 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1770

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.28.0...v2.29.0

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.28.0

This is a minor release of MAPL that is zero-diff in all testing, save for some History metadata changes.

With tripolar history output, the difference is due to a better tripolar grid factory being added to this release, so that tripolar History output is more like that of other grids including adding corner lats and lons.

For ALL History output, there is a global metadata change due to a request from NOAA. Namely, the default Contact: in History Gridded Component is now set to be blank. To keep metadata the same in GEOS History output, please set CONTACT: in your HISTORY.rc file. (This is done for GEOS users in a PR to GEOSgcmApp: https://github.com/GEOS-ESM/GEOSgcmApp/pull/367

Other changes in this release include:

Major extension to the Automatic Code Generator python script
Reorganization of the pFIO demo program
A fix to stretched-grid checkpoints
Addition of a new GitHub Action/CircleCI process to make a Docker container upon release

The libraries this version of MAPL has been tested with are below.

Baselibs 7.5.0
- netcdf-c 4.8.1
- netcdf-fortran 4.5.4
- ESMF 8.3.0
- GFE 1.4.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.4.1 (optional)
- fArgParse 1.3.0 (optional)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES)

Fixed

Fix checkpoint target_lon and target_lat to be in degrees rather than radians

Added

Implemented create from filemetdata for Tripolar Grid Factory and add corners to output when writing files on Tripolar grid
Added Dockerfile and CircleCI workflow to build and push container to both Docker Hub and GitHub Container Registry on MAPL releases. Uses a GitHub Action to trigger CircleCI pipeline on releases.

Changed

Removed URLs and emails from MAPL per request of NOAA.
- Changed the default Contact: in History Gridded Component to be blank. To keep metadata the same in History output, please set CONTACT: in your HISTORY.rc file.
Reorganized the file Tests/pfio_MAPL_demo.F90 to mimic the steps of MAPL_Cap.
Extend ACG
- Add options (MAPL_DataSpec) / columns (read_specs)
- Add constants for literals for uniformity (CATEGORIES, ALLOC, DELIMITER, TERMINATOR)
- Fix lookups in aliases (dict) to find key (alias) or value (alias target) to allow unaliased options are possible
- Add the alloc option to emit_get_pointers
- Update outdated comments

What's Changed

Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1710
Fixes #1694. Remove URLs from MAPL by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1715
Create dependabot.yml by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1714
Bump actions/upload-artifact from 2 to 3 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1721
Bump devops-infra/action-pull-request from 0.4 to 0.5.0 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1719
Bump styfle/cancel-workflow-action from 0.9.1 to 0.10.1 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1717
Bump actions/checkout from 2 to 3.1.0 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1720
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1718
Bump styfle/cancel-workflow-action from 0.10.1 to 0.11.0 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1725
Bump devops-infra/action-pull-request from 0.5.0 to 0.5.1 by @dependabot in https://github.com/GEOS-ESM/MAPL/pull/1726
Update dependabot to target develop by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1728
Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1727
Feature/bmauer/complete tripolar grid factory by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1697
Extend Automatic Code Generator by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/1713
Reorganize PFIO Standalone by @JulesKouatchou in https://github.com/GEOS-ESM/MAPL/pull/1693
Fixes #1687. Stretched Grid checkpoint attributes should be in degrees by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1736
Build Docker container on release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1724
GitFlow: Merge Develop into Main for 2.28 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1741

New Contributors

@dependabot made their first contribution in https://github.com/GEOS-ESM/MAPL/pull/1721

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.27.1...v2.28.0

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.27.1

This release of MAPL contains a hotfix that is actually more to fixing MAPL3 (see #1678), but the bug was present in main so it was hotfixed.

The fix is for a missing parentGC argument to addChildFromDSO

Dependent Libraries

The libraries this version of MAPL has been tested with are below.

Baselibs 7.5.0
- netcdf-c 4.8.1
- netcdf-fortran 4.5.4
- ESMF 8.3.0
- GFE 1.4.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.4.1 (optional)
- fArgParse 1.3.0 (optional)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES)

From `CHANGELOG.md`

Fixed

Fixed a missing parentGC argument to addChildFromDSO

What's Changed

Fixes #1678. Added parentGC argument to the call MAPL_AddChildFromDSO… by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/1709

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.27.0...v2.27.1

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.27.0

This is a minor release of MAPL that is zero-diff in all testing.

This release adds several new features:

Changes to support component level hybrid MPI/OpenMP
Ability to apply masks to expressions in ExtData2G
Added a subroutine that adds all exports from a child
Implement ISO 8601 (Date/Time) support for MAPL

Dependent Libraries

The libraries this version of MAPL has been tested with are below.

Baselibs 7.5.0
- netcdf-c 4.8.1
- netcdf-fortran 4.5.4
- ESMF 8.3.0
- GFE 1.4.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.4.1 (optional)
- fArgParse 1.3.0 (optional)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES)

From `CHANGELOG.md`

Fixed

Removed ESMFLUnitsRadians from ESMFLMod.F90 and replaced it with MAPLUnitsRadians in InternalConstants.F90. Did a global search/replace. This avoid the circular dependency build error when ESMFUnitsRadians is used in MaplGrid.F90

Added

Changes consistent with MAPL for accessor functions to get number of threads and current thread
Several changes to support component level hybrid MPI/OpenMP.
- See files OpenMPSupport.F90, EntryPointVector.F90, RunEntryPoint.F90, MaplGenericComponent.F90, MAPLGeneric.F90, and BaseProfiler.F90. The first three are new and the rest are modified.
Implement ISO 8601 (Date/Time) support for MAPL
Added ability to apply masks to expressions in ExtData2G
Added a subroutine that adds all exports from a child

What's Changed

Auto GitFlow - main → develop by @github-actions in https://github.com/GEOS-ESM/MAPL/pull/1680
check userRC in MAPL_GenericInitialize by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1684
Feature/aoloso/hybrid openmp by @aoloso in https://github.com/GEOS-ESM/MAPL/pull/1655
Feature/aoloso/hybrid openmp by @aoloso in https://github.com/GEOS-ESM/MAPL/pull/1699
Feature/wdboggs/timeformat iso8601 by @darianboggs in https://github.com/GEOS-ESM/MAPL/pull/1629
Feature/bmauer/fixes #1682 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1696
Prepare develop for MAPL 2.27.0 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1704
add all exports from a direct child by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1683
Merge Develop into Main for 2.27 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1706

New Contributors

@darianboggs made their first contribution in https://github.com/GEOS-ESM/MAPL/pull/1629

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.26.0...v2.27.0

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.26.0

This is a minor release of MAPL that is zero-diff in all testing.

The main impetus of this release is a bug-fix needed for the ExtData2G Transition. It also contains other fixes to history as well as improvements to CI.

Dependent Libraries

The libraries this version of MAPL has been tested with are below.

Baselibs 7.5.0
- netcdf-c 4.8.1
- netcdf-fortran 4.5.4
- ESMF 8.3.0
- GFE 1.4.0
- gFTL 1.8.1
- gFTL-shared 1.5.0
- pFUnit 4.4.1 (optional)
- fArgParse 1.3.0 (optional)
- pFlogger 1.9.1 (if -DBUILD_WITH_PFLOGGER=YES)
- yaFyaml 1.0.4 (if -DUSE_EXTDATA2G=YES)
- FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES)

From `CHANGELOG.md`

[2.26.0] - 2022-09-16

Fixed

Change the logic to check if the field is already connected to a valid grid. If yes, we bypass the checks for tilegrid (issue #1654)
Removed unnecessary DSO extension assert
Fixed bug that required a /dev/null ExtData entry to still have a file variable name
Fixed bug with checking for duplicate alias in collection
Added protection in History to only allow instantaneous or time-averaged modes

Added

Added Ninja build of MAPL to CI tests

Changed

Have MAPL_AddChildFromDSO call MAPL_AddChildFromDSOMeta (#1598)

Removed

Removed unused code from History GridComp

What's Changed

fixes #1657 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1659
fixes # 1656 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1658
Fixes #1654. We check first if we actually need to allocate the field… by @atrayano in https://github.com/GEOS-ESM/MAPL/pull/1660
Feature/bmauer/fixes #1665 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1666
Fixes #1668. Only allow certain History modes by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1669
remove unnecessary DSO lib name assertion by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1664
Fixes #1598. Have AddChildFromDSO call Meta by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1672
Add Ninja build of MAPL by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1673
Prepare for MAPL 2.26.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1675
Merge Develop into Main (2.26 Release) by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1677
Fix errant changelog entry by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1679

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.25.0...v2.26.0

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.25.0

This minor release of MAPL is zero-diff in all testing with GEOSgcm.

Updates include changes needed to support LoadBalancing of REAL64 variables, the addition of regrid_method to variable metadata in History, and other minor updates.

From `CHANGELOG.md`

Fixed

Fix setting stretched grid target latitude and longitude from restart file metadata

Added

Added member function getglobalvar to FileMetadata
Added option to build source tarfile when building MAPL standalone. By default this is OFF, but can be enabled with -DINSTALL_SOURCE_TARFILE=ON
Added regrid_method metadata to History output
Added an overloaded interface for MAPL_BalanceWork to handle both REAL32 and REAL64

Changed

Updated components.yaml to match GEOSgcm v10.22.5 (actually a bit beyond)
- ESMA_env v4.2.0 → v4.4.0 (Update to Intel 2022.1, Add TOSS4 Support at NAS)
- ESMA_cmake v3.17.0 → v3.18.0 (Updates to CPack and Provisional M2 Support)

Removed

Removed LatLonGridFactory_basic factory constructor (dead code)

What's Changed

Fixes #1564. Remove latlon basic constructor by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1628
Feature/bmauer/fixes #1620 by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1631
Fixes #1637 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1638
Add INSTALLSOURCETARFILE to MAPL standalone by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1640
Update to ESMAenv 4.4.0 (Intel 2022.1, TOSS4) and ESMAcmake v3.18.0 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1645
Fix bug setting target stretched grid lat/lon from restart file by @lizziel in https://github.com/GEOS-ESM/MAPL/pull/1647
Feature/wjiang/more on filemeta by @weiyuan-jiang in https://github.com/GEOS-ESM/MAPL/pull/1644
Feature/aoloso/load balance by @aoloso in https://github.com/GEOS-ESM/MAPL/pull/1650
Fixes #1636. Add History regrid_method attribute by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1643
Update CHANGELOG and CMakeLists for 2.25.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1652
Merge develop into main for 2.25 release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1653

New Contributors

@aoloso made their first contribution in https://github.com/GEOS-ESM/MAPL/pull/1650

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.24.0...v2.25.0

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.24.0

This is a minor release of MAPL. All testing with GEOSgcm shows it to be zero-diff.

There are many changes and additions to this release having to do with History. The main change is the addition of a new flag in HISTORY.rc, Allow_Overwrite. When this is set to true in HISTORY.rc:

Allow_Overwrite: .true.

this will allow History to "overwrite" files as it runs. This is not the default behavior as in GEOS we usually clean out scratch directories when running the model. But other users of MAPL often "re-use" a run space and so overwriting the history output is convenient. There are also other bugfixes for history to prevent running with impossible chunking, warning about the use of CFIOasync, and checking for duplicate entries.

This release also contains some tutorials on how to use MAPL and more information can be found on the wiki:

https://github.com/GEOS-ESM/MAPL/wiki/Using-the-MAPL-tutorials

From `CHANGELOG.md`

Fixed

Fix error trapping in bundleio test

Added

Add tutorials
Check for duplicate entries in the History.rc file
Check that a user-provided chunking in the History.rc is compatible with the output grid
If a user requests CFIOasync in the History.rc, print warning and set to CFIO
Added option allow writing to pre-existing files with History

Changed

Replaced deprecated RC macro with _RC and remove unused code in ExtData2G
Moved to checkout@v3 action due to git safe directory issue
Added tutorials to CI

What's Changed

Fix GitHub Actions issue by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1593
Tutorial Proposal by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1586
Add tutorials to MAPL CI by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1599
Hand merge main into develop 2022-Jul-15 by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1604
Fix multiple history issues by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1608
just some cleanup of ExtData2G by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1610
Fix error trapping in BundleIO test by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1615
Fixes #1621 by @bena-nasa in https://github.com/GEOS-ESM/MAPL/pull/1622
Update CHANGELOG and CMakeLists for 2.24.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1624
Merge Develop into Main for 2.24.0 Release by @mathomp4 in https://github.com/GEOS-ESM/MAPL/pull/1626

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.23.1...v2.24.0

- Fortran
Published by mathomp4 over 3 years ago

MAPL - MAPL 2.8.0.9

This is a bugfix release on the 2.8.0 series. This release backports the new "monotonic" regridding options from 2.22.0

From `CHANGELOG.md`

Added

Added backport of monotonic regridding option from MAPL v2.22.0

Full Changelog: https://github.com/GEOS-ESM/MAPL/compare/v2.8.0.8...v2.8.0.9

- Fortran
Published by bena-nasa over 3 years ago

Recent Releases of MAPL

MAPL - MAPL 2.59.0

From CHANGELOG.md

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MAPL - MAPL 2.58.1

From CHANGELOG.md

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MAPL - MAPL 2.58.0

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MAPL - MAPL 2.56.1

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MAPL - MAPL 2.56.0

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MAPL - MAPL 2.53.3

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MAPL - MAPL 2.55.0

From CHANGELOG.md

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MAPL - MAPL 2.53.2

From CHANGELOG.md

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MAPL - MAPL 2.54.2

From CHANGELOG.md

[2.54.2] - 2025-03-18

Fixed

What's Changed

MAPL - MAPL 2.54.1

From CHANGELOG.md

[2.54.1] - 2025-02-07

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MAPL - MAPL 2.54.0

From CHANGELOG.md

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MAPL - MAPL 2.53.1

From CHANGELOG.md

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MAPL - MAPL 2.53.0

From CHANGELOG.md

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MAPL - MAPL 2.52.0

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