envo - v2025-08-19

What's Changed

• Replaced invalid URL for 31 soil terms with valid URL - issue #1545 by @timalamenciak in https://github.com/EnvironmentOntology/envo/pull/1612
• obsoleted 'ecozone' by @timalamenciak in https://github.com/EnvironmentOntology/envo/pull/1582
• Added spatio-temporal scale by @timalamenciak in https://github.com/EnvironmentOntology/envo/pull/1576
• Moved planned burn - Closes issue #1329 by @timalamenciak in https://github.com/EnvironmentOntology/envo/pull/1611
• NMDC Sediment value set classes and assignments by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1618
• Add materialize step to ENVO full version by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1623
• 2025-08-19 release from 2025-06-02-RC2 by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1631

Full Changelog: https://github.com/EnvironmentOntology/envo/compare/v2025-02-05...v2025-08-19

- Makefile
Published by turbomam 10 months ago

envo - v2025-02-05

What's Changed

• ecoregion without GAZ mention by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1523
• southern African ecoregions by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1526
• Refresh ENVO imports and cleans them by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1529
• new terms for animal constructions. by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1530
• NTRs: bioremediation and biotransformation processes by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1534
• Updated ontobot.yml by @hrshdhgd in https://github.com/EnvironmentOntology/envo/pull/1535
• Fix range of inSubset to be an IRI, using existing defined subsets. Fixes #1527. by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1528
• addressing #1402 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1537
• Updated ontobot.yml by @hrshdhgd in https://github.com/EnvironmentOntology/envo/pull/1540
• update GOC->ENVO by @sierra-moxon in https://github.com/EnvironmentOntology/envo/pull/1548
• Update envo-idranges.owl by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1558
• Added logical definitions for multiple biomes. by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1552
• Technospheres, dental clinics, and facilities - oh my! by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1544
• Multi-issue slayer by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1564
• Add 'biogeographic realm' by @timalamenciak in https://github.com/EnvironmentOntology/envo/pull/1567
• resolved coastal ocean water/coastal seawater synonym conflicts by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1592
• Import PATO:'chronological age' by @timalamenciak in https://github.com/EnvironmentOntology/envo/pull/1588
• partial implementation of annotation properties for NMDC environmental context value sets by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1593
• Added terms for mine pits by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1604
• NMDC environmental context bindings by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1599
• Update release files 4th February 2025 by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1605

New Contributors

• @sierra-moxon made their first contribution in https://github.com/EnvironmentOntology/envo/pull/1548
• @timalamenciak made their first contribution in https://github.com/EnvironmentOntology/envo/pull/1567

Full Changelog: https://github.com/EnvironmentOntology/envo/compare/v2024-07-01...v2025-02-05

- Makefile
Published by matentzn over 1 year ago

envo - v2024-07-01

Diff

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/envo.owl
• Version IRI: http://purl.obolibrary.org/obo/envo/releases/2024-02-16/envo.owl
• Loaded from: file:/Users/cjm/repos/envo/envo.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/envo.owl
• Version IRI: http://purl.obolibrary.org/obo/envo/releases/2024-07-01/envo.owl
• Loaded from: file:/Users/cjm/repos/envo/envo-2024-07-01.owl

Ontology imports

Ontology annotations

Removed

• versionInfo "2024-02-16"

Added

• versionInfo "2024-07-01"

Bathymodiolus-dominated oceanic mussel reef http://purl.obolibrary.org/obo/ENVO_01001385

Removed

• Bathymodiolus-dominated oceanic mussel reef SubClassOf part of some (marine bathyal zone biome or marine abyssal zone biome or marine hadal zone biome)

acidic spring http://purl.obolibrary.org/obo/ENVO_01001898

Added

• acidic spring EquivalentTo spring and (has characteristic some acidic)

• acidic spring SubClassOf has characteristic some acidic

agricultural land conversion process http://purl.obolibrary.org/obo/ENVO_01001430

Removed

• agricultural land conversion process SubClassOf has participant some (anthropogenic environment or natural environment)

agriculture http://purl.obolibrary.org/obo/ENVO_01001442

Removed

• agriculture SubClassOf has part some (land consumption process or land conversion process or land degradation)

aircraft noise http://purl.obolibrary.org/obo/ENVO_03500024

Added

• aircraft noise label "aircraft noise"@en

• aircraft noise definition "A noise produced by aircrafts."

• aircraft noise date "2024-01-19T18:55:41Z"^^dateTime

• aircraft noise creator 0000-0002-2908-3327

• Class: aircraft noise

• aircraft noise SubClassOf noise

algal bloom http://purl.obolibrary.org/obo/ENVO_2000004

Added

• algal bloom hasexactsynonym "phytoplankton bloom"

altocumulus cloud http://purl.obolibrary.org/obo/ENVO_01001409

Removed

• altocumulus cloud SubClassOf hydrometeor

altostratus cloud http://purl.obolibrary.org/obo/ENVO_01001410

Removed

• altostratus cloud SubClassOf composed primarily of some (liquid water or water ice)

atmospheric boundary layer http://purl.obolibrary.org/obo/ENVO_01000323

Removed

• atmospheric boundary layer SubClassOf part of some atmosphere

Added

• atmospheric boundary layer SubClassOf atmospheric layer

biological nutrient removal during wastewater treatment http://purl.obolibrary.org/obo/ENVO_02000158

Added

• biological nutrient removal during wastewater treatment created "2024-05-19T05:34:58Z"^^dateTime

• biological nutrient removal during wastewater treatment label "biological nutrient removal during wastewater treatment"@en

• biological nutrient removal during wastewater treatment definition "A recycling process that uses microbes for the uptake of nitrogen and phosphorus during wastewater treatment."

• biological nutrient removal during wastewater treatment contributor 0000-0002-6601-2165

• Class: biological nutrient removal during wastewater treatment

• biological nutrient removal during wastewater treatment SubClassOf part of some wastewater treatment process

• biological nutrient removal during wastewater treatment SubClassOf recycling process

cirrocumulus cloud http://purl.obolibrary.org/obo/ENVO_01001407

Removed

• cirrocumulus cloud SubClassOf hydrometeor

cirrostratus cloud http://purl.obolibrary.org/obo/ENVO_01001408

Removed

• cirrostratus cloud SubClassOf hydrometeor

cirrus cloud http://purl.obolibrary.org/obo/ENVO_01001160

Removed

• cirrus cloud SubClassOf hydrometeor

convective storm http://purl.obolibrary.org/obo/ENVO_01001294

Removed

• convective storm SubClassOf convective transport process and (has participant some air mass)

Added

• convective storm SubClassOf has participant some air mass

• convective storm SubClassOf convective transport process

created http://purl.org/dc/terms/created

Added

• AnnotationProperty: created

cumulonimbus cloud http://purl.obolibrary.org/obo/ENVO_01001419

Removed

• cumulonimbus cloud SubClassOf composed primarily of some (liquid water or water ice)

cumulus cloud http://purl.obolibrary.org/obo/ENVO_01001414

Removed

• cumulus cloud SubClassOf hydrometeor

depth of water ice http://purl.obolibrary.org/obo/ENVO_03400017

Removed

• depth of water ice SubClassOf depth and (characteristic of some water ice)

Added

• depth of water ice EquivalentTo depth and (characteristic of some water ice)

• depth of water ice SubClassOf depth

• depth of water ice SubClassOf characteristic of some water ice

desert spring http://purl.obolibrary.org/obo/ENVO_02000139

Added

• desert spring contributor 0000-0002-6601-2165

• desert spring created "2024-05-18T04:40:55Z"^^dateTime

• desert spring label "desert spring"@en

• desert spring definition "A spring that is located in the desert."

  • databasecrossreference 0000-0002-6601-2165

• Class: desert spring

• desert spring EquivalentTo spring and (located in some desert)

• desert spring SubClassOf located in some desert

• desert spring SubClassOf spring

electroplating fume http://purl.obolibrary.org/obo/ENVO_03500016

Added

• electroplating fume label "electroplating fume"@en

• electroplating fume creator 0000-0002-2908-3327

• electroplating fume date "2024-01-19T18:28:58Z"^^dateTime

• electroplating fume definition "A fume containing volatile organic compounds produced through the process of electroplating"

• Class: electroplating fume

• electroplating fume SubClassOf fume

fluid interface layer http://purl.obolibrary.org/obo/ENVO_01001677

Removed

• fluid interface layer SubClassOf composed primarily of some (gaseous environmental material or liquid environmental material)

Added

• fluid interface layer SubClassOf fluid layer

fluid surface layer http://purl.obolibrary.org/obo/ENVO_01001673

Removed

• fluid surface layer SubClassOf composed primarily of some (gaseous environmental material or liquid environmental material)

Added

• fluid surface layer SubClassOf fluid interface layer

forestry http://purl.obolibrary.org/obo/ENVO_01001432

Removed

• forestry SubClassOf has part some (land consumption process or land conversion process or land degradation)

freshwater spring http://purl.obolibrary.org/obo/ENVO_01000598

Added

• freshwater spring EquivalentTo spring and (composed primarily of some fresh water)

• freshwater spring SubClassOf composed primarily of some fresh water

• freshwater spring SubClassOf liquid astronomical body part

gaseous front http://purl.obolibrary.org/obo/ENVO_01001680

Removed

• gaseous front SubClassOf fluid layer

gaseous surface layer http://purl.obolibrary.org/obo/ENVO_01001683

Removed

• gaseous surface layer SubClassOf fluid interface layer

• gaseous surface layer SubClassOf fluid layer

gasoline vapor http://purl.obolibrary.org/obo/ENVO_03500021

Added

• gasoline vapor creator 0000-0002-2908-3327

• gasoline vapor label "gasoline vapor"@en

• gasoline vapor date "2024-01-19T18:39:48Z"^^dateTime

• gasoline vapor definition "A fume produced by liquid gasoline, containing aerosolized components of the gasoline."

• Class: gasoline vapor

• gasoline vapor SubClassOf fume

glacial ice ablation process http://purl.obolibrary.org/obo/ENVO_01000919

Added

• glacial ice ablation process SubClassOf englacial process

hail http://purl.obolibrary.org/obo/ENVO_03400011

Removed

• hail SubClassOf object aggregate and (has member some hail stone)

Added

• hail SubClassOf object aggregate

• hail SubClassOf has member some hail stone

lead solder http://purl.obolibrary.org/obo/ENVO_03500019

Added

• lead solder creator 0000-0002-2908-3327

• lead solder definition "A solder which includes lead."

• lead solder date "2024-01-19T18:34:02Z"^^dateTime

• lead solder label "lead solder"@en

• Class: lead solder

• lead solder SubClassOf solder

liquid surface layer http://purl.obolibrary.org/obo/ENVO_01001310

Removed

• liquid surface layer SubClassOf fluid interface layer

mangrove biome sediment http://purl.obolibrary.org/obo/ENVO_02000152

Added

• mangrove biome sediment definition "Sediment that is part of a mangrove biome."

• mangrove biome sediment contributor 0000-0002-6601-2165

• mangrove biome sediment label "mangrove biome sediment"@en

• mangrove biome sediment hasexactsynonym "mangrove sediment"

• mangrove biome sediment created "2024-05-18T06:13:48Z"^^dateTime

• mangrove biome sediment comment "Mangroves are widely recognised as key ecosystems for climate change mitigation as they capture and store significant amounts of sediment organic carbon (SOC)."

• Class: mangrove biome sediment

• mangrove biome sediment EquivalentTo sediment and (part of some mangrove biome)

• mangrove biome sediment SubClassOf sediment

• mangrove biome sediment SubClassOf astronomical body part

• mangrove biome sediment SubClassOf part of some mangrove biome

marine salt marsh biome http://purl.obolibrary.org/obo/ENVO_01000022

Added

• marine salt marsh biome hasrelatedsynonym "salt marsh"

marine salt marsh sediment http://purl.obolibrary.org/obo/ENVO_02000153

Added

• marine salt marsh sediment contributor 0000-0002-6601-2165

• marine salt marsh sediment created "2024-05-18T06:21:33Z"^^dateTime

• marine salt marsh sediment definition "Sediment that is part of a salt marsh."

• marine salt marsh sediment label "marine salt marsh sediment"@en

• Class: marine salt marsh sediment

• marine salt marsh sediment EquivalentTo sediment and (part of some marine salt marsh biome)

• marine salt marsh sediment SubClassOf marine sediment

• marine salt marsh sediment SubClassOf astronomical body part

• marine salt marsh sediment SubClassOf part of some marine salt marsh biome

mass of ice and snow http://purl.obolibrary.org/obo/ENVO_01001620

Removed

• mass of ice and snow SubClassOf snow mass and (has part some ice mass)

Added

• mass of ice and snow SubClassOf has part some ice mass

• mass of ice and snow SubClassOf snow mass

municipal landfill http://purl.obolibrary.org/obo/ENVO_02000157

Added

• municipal landfill created "2024-05-19T05:30:43Z"^^dateTime

• municipal landfill label "municipal landfill"@en

• municipal landfill definition "A landfill that receives household waste."

  • databasecrossreference "https://www.epa.gov/landfills/municipal-solid-waste-landfills"

• municipal landfill contributor 0000-0002-6601-2165

• Class: municipal landfill

• municipal landfill SubClassOf landfill

nimbostratus cloud http://purl.obolibrary.org/obo/ENVO_01001411

Removed

• nimbostratus cloud SubClassOf composed primarily of some (liquid water or water ice)

noise http://purl.obolibrary.org/obo/ENVO_03500022

Added

• noise definition "An energy transfer process that moves vibrations through a medium, such as air or water, that is received and perceived by an organism and considered unpleasant, loud, or disruptive."

  • databasecrossreference "https://www.wikidata.org/wiki/Q179448"

• noise label "noise"@en

• noise date "2024-01-19T18:52:13Z"^^dateTime

• noise creator 0000-0002-2908-3327

• Class: noise

• noise SubClassOf energy transfer process

non-lead solder http://purl.obolibrary.org/obo/ENVO_03500020

Added

• non-lead solder label "non-lead solder"@en

• non-lead solder definition "A solder which is composed without lead."

• non-lead solder date "2024-01-19T18:34:10Z"^^dateTime

• non-lead solder creator 0000-0002-2908-3327

• Class: non-lead solder

• non-lead solder SubClassOf solder

oil spill http://purl.obolibrary.org/obo/ENVO_00002061

Added

• oil spill hasrelatedsynonym "oil contamination"

• oil spill SubClassOf has increased levels of some oil

organic dairy farm http://purl.obolibrary.org/obo/ENVO_02000156

Added

• organic dairy farm contributor 0000-0002-6601-2165

• organic dairy farm definition "A dairy farm which is managed using practices certified to be organic by a competent authority."

• organic dairy farm created "2024-05-19T05:23:09Z"^^dateTime

• organic dairy farm label "organic dairy farm"@en

• Class: organic dairy farm

• organic dairy farm EquivalentTo dairy farm and organic farm

• organic dairy farm SubClassOf organic farm

• organic dairy farm SubClassOf dairy farm

planetary surface http://purl.obolibrary.org/obo/ENVO_01000324

Removed

• planetary surface SubClassOf (adjacent to some atmosphere) or (adjacent to some outer space)

• planetary surface SubClassOf composed primarily of some (solid environmental material or liquid environmental material)

planktonic material http://purl.obolibrary.org/obo/ENVO_01000063

Added

• planktonic material hasexactsynonym "mass of plankton"

• planktonic material hasrelatedsynonym "plankton"

pneumatic drill http://purl.obolibrary.org/obo/ENVO_03500028

Added

• pneumatic drill date "2024-01-19T19:25:02Z"^^dateTime

• pneumatic drill definition "A hand tool that uses air-power to drill holes or destroy hard surfaces like rock, concrete, or asphalt"

• pneumatic drill creator 0000-0002-2908-3327

• pneumatic drill label "pneumatic drill"@en

• Class: pneumatic drill

• pneumatic drill SubClassOf hand tool

puddle of water http://purl.obolibrary.org/obo/ENVO_01000871

Added

• puddle of water hasexactsynonym "puddle"

pulp-bleaching waste water http://purl.obolibrary.org/obo/ENVO_00002193

Added

• pulp-bleaching waste water hasrelatedsynonym "pulp and paper wastewater"

recycling process http://purl.obolibrary.org/obo/ENVO_01000741

Removed

• recycling process SubClassOf environmental system process

Added

• recycling process SubClassOf anthropogenic environmental process

road traffic noise http://purl.obolibrary.org/obo/ENVO_03500023

Added

• road traffic noise definition "A noise produced by road traffic and automobiles."

• road traffic noise creator 0000-0002-2908-3327

• road traffic noise label "road traffic noise"@en

• road traffic noise date "2024-01-19T18:54:48Z"^^dateTime

• Class: road traffic noise

• road traffic noise SubClassOf noise

role http://purl.obolibrary.org/obo/CHEBI_50906

Removed

• role SubClassOf role

Added

• role SubClassOf quality

• role SubClassOf realizable entity

role http://purl.obolibrary.org/obo/BFO_0000023

Removed

• role SubClassOf role

Added

• role SubClassOf quality

• role SubClassOf realizable entity

sea surface layer http://purl.obolibrary.org/obo/ENVO_01001581

Removed

• sea surface layer SubClassOf part of some (ocean or sea)

Added

• sea surface layer SubClassOf marine layer

secondhand smoke http://purl.obolibrary.org/obo/ENVO_03500025

Added

• secondhand smoke definition "A smoke which is inhaled involuntarily from a tobacco product smoked by another individual."

• secondhand smoke creator 0000-0002-2908-3327

• secondhand smoke date "2024-01-19T18:57:57Z"^^dateTime

• secondhand smoke label "secondhand smoke"@en

• Class: secondhand smoke

• secondhand smoke SubClassOf smoke

snow and ice accumulation process http://purl.obolibrary.org/obo/ENVO_01001619

Removed

• snow and ice accumulation process SubClassOf snow accumulation process and (has part some ice accumulation process)

Added

• snow and ice accumulation process SubClassOf snow accumulation process

• snow and ice accumulation process SubClassOf has part some ice accumulation process

solder http://purl.obolibrary.org/obo/ENVO_03500018

Added

• solder date "2024-01-19T18:33:47Z"^^dateTime

• solder label "solder"@en

• solder creator 0000-0002-2908-3327

• solder definition "A metallic material which is composed of two or more metals and used to create a permanent bond between metal workpieces."

  • databasecrossreference "https://www.wikidata.org/wiki/Q866612"

• Class: solder

• solder DisjointUnionOf lead solder, non-lead solder

• solder SubClassOf metallic material

soldering fumes http://purl.obolibrary.org/obo/ENVO_03500017

Added

• soldering fumes creator 0000-0002-2908-3327

• soldering fumes date "2024-01-19T18:31:53Z"^^dateTime

• soldering fumes definition "A fume containing solid particles of solder, produced through the process of melting solder to join multiple metals together."

• soldering fumes label "soldering fumes"@en

• Class: soldering fumes

• soldering fumes SubClassOf fume

solid waste material http://purl.obolibrary.org/obo/ENVO_02000155

Added

• solid waste material definition "Solid material that has a waste role."

• solid waste material label "solid waste material"@en

• solid waste material hasrelatedsynonym "solid waste"

• solid waste material contributor 0000-0002-6601-2165

• solid waste material created "2024-05-19T05:18:16Z"^^dateTime

• Class: solid waste material

• solid waste material EquivalentTo solid environmental material and (has role some waste role)

• solid waste material SubClassOf waste material

• solid waste material SubClassOf solid environmental material

stratocumulus cloud http://purl.obolibrary.org/obo/ENVO_01001412

Removed

• stratocumulus cloud SubClassOf hydrometeor

stratus cloud http://purl.obolibrary.org/obo/ENVO_01001413

Removed

• stratus cloud SubClassOf hydrometeor

subterranean lake http://purl.obolibrary.org/obo/ENVO_02000145

Added

• subterranean lake label "subterranean lake"@en

• subterranean lake definition "A lake underneath the surface of the Earth."

  • databasecrossreference "https://en.wikipedia.org/wiki/Underground_lake"

• subterranean lake created "2024-05-18T06:05:30Z"^^dateTime

• subterranean lake contributor 0000-0002-6601-2165

• Class: subterranean lake

• subterranean lake SubClassOf underground water

• subterranean lake SubClassOf lake

terrestrial mining http://purl.obolibrary.org/obo/ENVO_01001433

Removed

• terrestrial mining SubClassOf has part some (land consumption process or land conversion process or land degradation)

• terrestrial mining SubClassOf has participant some (terrestrial biome or planetary landmass or terrestrial natural environment)

Added

• terrestrial mining SubClassOf land use process

waste water http://purl.obolibrary.org/obo/ENVO_00002001

Added

• waste water EquivalentTo liquid water and (has role some waste role)

water-based cloud http://purl.obolibrary.org/obo/ENVO_01001428

Removed

• water-based cloud SubClassOf composed primarily of some (liquid water or water ice)

Added

• water-based cloud SubClassOf hydrometeor

What's Changed

• v2024-02-16 release candidate by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1496
• Update biome.yaml by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1484
• Issue 1399 by @diatomsRcool in https://github.com/EnvironmentOntology/envo/pull/1486
• Add DOSDP QC by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1449
• Fixing hail axiom and depth of water ice axiom by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1498
• Cleaning up ID range file by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1372
• Update envo-idranges.owl by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1512
• Assorted new terms and synonyms for alignment with GOLD by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1517
• new release by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1519

Full Changelog: https://github.com/EnvironmentOntology/envo/compare/v2024-02-16...v2024-07-01

- Makefile
Published by cmungall almost 2 years ago

envo - v2024-02-16

What's Changed

• fix invalid creation_dates by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1494

Full Changelog: https://github.com/EnvironmentOntology/envo/compare/v2024-02-05...v2024-02-16

- Makefile
Published by turbomam over 2 years ago

envo - v2024-02-05

:warning: As always, the new terms will be available after a few days as they percolate through the ether :warning:

What's Changed

Ontology content

• Relax logical definition of water ice, liquid water=>water. by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1411
• multiple NTRs for GOLD annotations, closes #1367 by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1391
• Replacing EnvO hash-relations, fixes #1380. by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1381
• Soil compaction by @marieALaporte in https://github.com/EnvironmentOntology/envo/pull/1373
• Astronomical Body Part refactoring by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1430
• Fixed logical def for animal environment. Fixes #1435 by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1439
• Alicia's stream parts with revisions by PLB by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1451
• Remove legacy synonyms on ice sheet by @hrshdhgd in https://github.com/EnvironmentOntology/envo/pull/1447
• add biome 'part of' 'climactic ecological succession' axioms for better inferred hierarchy by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1459
• Addressing #865 with desert biome example by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1445
• Proposal: obsolete 'alga' by @hrshdhgd in https://github.com/EnvironmentOntology/envo/pull/1450
• remove 'algal bloom' 'results in proliferation of' some 'obsolete alga' by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1483
• 'periphytic biofilm' and subClasses: start with 'periphytic biofilm' subClassOf 'biofilm' by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1468
• Periphytic biofilm subclasses by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1472
• #1474 epiphyton dbxrefs by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1475
• added stream water by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1479
• added freshwater stream and biome by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1477

Ontology patterns

• replacing hasAlternativeId with hasDbXref for all non-ENVO literal CURIEs. by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1418
• Modify containment relations to be location relations. by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1425
• Standardize ad-hoc definition of plural synonym by @cthoyt in https://github.com/EnvironmentOntology/envo/pull/1465

Infrastructure

• Create sssom-qc.yml by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1414
• Use SSSOM format for IGSN mappings by @cmungall in https://github.com/EnvironmentOntology/envo/pull/984
• SSSOM QC esp. for sweet by @rduerr in https://github.com/EnvironmentOntology/envo/pull/1412
• normalized serialization of envo-edit for new owlapi by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1436
• renormalizing to latest owlapi by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1452
• Smaller NMDC id range... remainder for Mark and Alicia by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1438
• add obook pull request guide to CONTRIBUTING.md by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1431
• Implement ontobot-change-agent as a GitHub action workflow by @hrshdhgd in https://github.com/EnvironmentOntology/envo/pull/1443
• SPARQL for misclassified biomes by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1457
• Switch NCBITAXON and CHEBI to slims by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1455
• Update ontobot.yml workflow to use kgcl-java as a plugin to robot that already exists in ODK. by @hrshdhgd in https://github.com/EnvironmentOntology/envo/pull/1467

New Contributors

• @omahs made their first contribution in https://github.com/EnvironmentOntology/envo/pull/1429
• @hrshdhgd made their first contribution in https://github.com/EnvironmentOntology/envo/pull/1443

Full Changelog: https://github.com/EnvironmentOntology/envo/compare/v2023-02-13...v2024-02-05

- Makefile
Published by turbomam over 2 years ago

envo - 2023-02-13 release

What's Changed

• Removing false injection by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1188
• Issue 1181: Freezing fog makes the ontology incoherent by @wdduncan in https://github.com/EnvironmentOntology/envo/pull/1207
• axiomitisation of plastic-related terms by @raissameyer in https://github.com/EnvironmentOntology/envo/pull/1169
• Issue 1182: ro_import does not include domain by @wdduncan in https://github.com/EnvironmentOntology/envo/pull/1215
• Add stricter check to prevent logical equivalents by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1197
• update foodon import by @wdduncan in https://github.com/EnvironmentOntology/envo/pull/1233
• Add Agronomy ID_range #1222 by @KrishnaTO in https://github.com/EnvironmentOntology/envo/pull/1227
• new health facility and other infrastructure terms by @ddooley in https://github.com/EnvironmentOntology/envo/pull/1105
• [#1249] Add synonym 'land surface' to 'surface of an astronomical body' by @dr-shorthair in https://github.com/EnvironmentOntology/envo/pull/1254
• Fix typo in geonames by @cthoyt in https://github.com/EnvironmentOntology/envo/pull/1256
• Lc toxicwaste by @laurenechan in https://github.com/EnvironmentOntology/envo/pull/1284
• add qc workflow by @wdduncan in https://github.com/EnvironmentOntology/envo/pull/1240
• update foodon import by @wdduncan in https://github.com/EnvironmentOntology/envo/pull/1288
• Issue 1286: remove exact synonyms that match label by @wdduncan in https://github.com/EnvironmentOntology/envo/pull/1289
• Fix github actions to not build imports by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1292
• Adding missing defs detected in #1159 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1163
• [#1248] synonym for 'solid astronomical body part' --> 'landform' by @dr-shorthair in https://github.com/EnvironmentOntology/envo/pull/1253
• Issue 1160 by @kaiiam in https://github.com/EnvironmentOntology/envo/pull/1172
• Issue #1193 Jagadish NMDC NTRs from 202100702 by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1195
• Tightening QC on ENVO CI by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1300
• #334 added classes per 'treated water' by @KrishnaTO in https://github.com/EnvironmentOntology/envo/pull/1260
• remove duplicate NICU synonym Fixes #1303 by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1305
• Make sure DL profile check works by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1307
• Definition correction for 'eaves' by @johnwjudkins in https://github.com/EnvironmentOntology/envo/pull/1308
• Addressing issue 1304 of malformed definition source links by @ddooley in https://github.com/EnvironmentOntology/envo/pull/1309
• Issue 1311 by @kaiiam in https://github.com/EnvironmentOntology/envo/pull/1312
• Update to issue 1238 and 1282 push by @ddooley in https://github.com/EnvironmentOntology/envo/pull/1298
• #398 added synonym 'topsoil' by @KrishnaTO in https://github.com/EnvironmentOntology/envo/pull/1270
• Added OWL DL profile check to CI by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1324
• NTR famine by @laurenechan in https://github.com/EnvironmentOntology/envo/pull/1211
• New terms for refineries and reactors by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1184
• [#364] Added synonym 'PAR' to 'photosynthetically active radiation' by @KrishnaTO in https://github.com/EnvironmentOntology/envo/pull/1239
• issue-1185, further editing of plastics related terms by @raissameyer in https://github.com/EnvironmentOntology/envo/pull/1186
• Added class per issue #375 "soil bulk density" by @KrishnaTO in https://github.com/EnvironmentOntology/envo/pull/1230
• Added bubble and plume semantics for #1319 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1320
• Make ontology's licensing information actionable by @cthoyt in https://github.com/EnvironmentOntology/envo/pull/1297
• Fixes #1281 and #443 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1326
• Krishna to issue 397 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1327
• Krishna TO issue 367 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1328
• Hot fixing the make pipeline by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1332
• Krishna to agro prj patterns for #1228 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1330
• Issue #1191 jagadish 20210625 by @turbomam in https://github.com/EnvironmentOntology/envo/pull/1192
• concentration of water in soil and sublcasses by @marieALaporte in https://github.com/EnvironmentOntology/envo/pull/1336
• Krishna to issue 361 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1339
• Add porosity of snow and water ice #923 by @kaiiam in https://github.com/EnvironmentOntology/envo/pull/1341
• Revising particulates and particles by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1344
• NT: monument. Fixes #1213 by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1220
• Top level cleanup by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1345
• Krishna to issue 365 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1346
• Krishna to issue 436 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1349
• Krishna to issue 420 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1350
• Krishna TO issue 392 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1352
• Krishna to issue 363 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1354
• Applying replace CJM string with orcid to envo-edit.owl by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1358
• Claim an IDrange for ANZ Soils by @dr-shorthair in https://github.com/EnvironmentOntology/envo/pull/1365
• Adding DL profile validation back to unit tests. See #1334 by @cmungall in https://github.com/EnvironmentOntology/envo/pull/1357
• Krishna to issue 430 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1364
• Krishna to issue 358 by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1369
• Create subset for Austrailian and New Zealand soil semantics by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1368
• fix: change till plan to till plain by @wdduncan in https://github.com/EnvironmentOntology/envo/pull/1394
• fix: add definition for sea ice mass by @wdduncan in https://github.com/EnvironmentOntology/envo/pull/1395
• First pass at SWEET-ENVO cryosphere SSSOM by @pbuttigieg in https://github.com/EnvironmentOntology/envo/pull/1397
• ENVO release 13.02.2023 (#1401) by @matentzn in https://github.com/EnvironmentOntology/envo/pull/1404

New Contributors

• @KrishnaTO made their first contribution in https://github.com/EnvironmentOntology/envo/pull/1227
• @dr-shorthair made their first contribution in https://github.com/EnvironmentOntology/envo/pull/1254
• @cthoyt made their first contribution in https://github.com/EnvironmentOntology/envo/pull/1256
• @johnwjudkins made their first contribution in https://github.com/EnvironmentOntology/envo/pull/1308

Full Changelog: https://github.com/EnvironmentOntology/envo/compare/v2021-05-14...v2023-02-13

- Makefile
Published by matentzn over 3 years ago

envo - 2021-05-14 release

:warning: As always, the new terms will be available after a few days as they percolate through the ether :warning:

New editors

We welcome to our team our many new editors and contributors: @raissameyer - Raissa Meyer, @iwilkie - Isabella Wilkie, @meichen-liu - Meichen Liu, @laurenechan Lauren Chan, @matentzn - Nico Matentzoglu , @turbomam - Mark A. Miller, and @wdduncan - Bill Duncan (not mentioned in the last release). Thank you all for your various contributions we hope they serve your various projects well!

Description

Our long awaited next release covering various projects ranging from plastic pollution to manufactured products to the National Microbiome Data Collaborative (NMDC) and Joint Genome Institute (JGI) contributions for metagenomic data management requested by @jagadishsc.

New Terms

abandoned fishing gear acrylic paint medium acrylic paint adhesion adsorption agricultural potting mixture aqueous inkjet printer ink automatic transmission fluid biodegradation of plastic biodegradation biofouling biopolymer biota bituminous sand brake fluid chemical colorant chemically contaminated sediment cleaning agent cleanroom cloud base cloud part cloud top coastal anthropogenic litter cohesion colorant fluid cooling water debris flow following rainfall degreaser diesel exhaust diesel fuel discarded fishing gear drinking water pipeline network drinking water treatment plant dye earth-filled dam electrical switch embankment dam emissions from petroleum combustion enamel thinner entanglement of organisms in marine debris entanglement process far-infrared radiation fishing gear fishing foamed plastic food waste formation fluid fouling fountain pen ink fragmentation due to weathering fragmentation process freezing fog gasoline exhaust gasoline gel ink ghost fishing grain of snow granule of plastic foam graupel high atmospheric level hoar crystal hydraulic fluid ice fog India ink ingestion intensive care unit interstitial water lacquer leather dye litter role littering lost fishing gear low atmospheric level luminescent paint macroplastic particle manufactured plastisphere marine anthropogenic litter marine biota megaplastic particle membrane bioreactor mesoplastic particle methyl cellulose paste middle atmospheric level mid-infrared radiation mineral horizon motor oil nanoplastic particle naphtha natural plastic near-infrared radiation NSIDC blizzard oceanic transient tracer oil paint thinner oil pipeline network oil-based paint organic horizon paint thinner paper dye permanent hair dye pharmaceutical ink piece of plastic foam pipeline network plastic film plastic fragment plastic line plastic manufacturing process plastic pellet plastic production compound plastic plastisphere polluted river primer (paint) proglacial quality of a foam radioactive material resin (gum) varnish resin rock dust rubber cement saprolite shellac slurry snow crystal soil horizon soy ink stain subglacial sugarcane vinasse supercooled water droplet supraglacial surface hoar synthetic plastic synthetic polymer tailings dam tailings pond textile dye thermoplastic material thermoplasticity thermoset polymer thermosetting disposition tragacanth transient tracer tundra climate turpentine ultrasound radiation varnish vinasse vitreous enamel volume of cyanoacrylate water column water cooling weathering of plastic weathering winter blizzard WMO blizzard wood dust wood stain xanthan gum

New imported classes

PURL | label ----|---- http://purl.obolibrary.org/obo/CHEBI143901 | manganese dihydroxide http://purl.obolibrary.org/obo/CHEBI30218 | helium-3 atom http://purl.obolibrary.org/obo/CHEBI155827 | argon-39 http://purl.obolibrary.org/obo/CHEBI36928 | carbon-13 atom http://purl.obolibrary.org/obo/CHEBI36927 | carbon-14 atom http://purl.obolibrary.org/obo/CHEBI26675 | silicic acid http://purl.obolibrary.org/obo/CHEBI29238 | tritium atom http://purl.obolibrary.org/obo/CHEBI72695 | organic molecule http://purl.obolibrary.org/obo/CHEBI24835 | inorganic molecular entity http://purl.obolibrary.org/obo/CHEBI60034 | polyethylene polymer http://purl.obolibrary.org/obo/CHEBI53550 | poly(propylene) http://purl.obolibrary.org/obo/CHEBI53243 | poly(vinyl) chloride http://purl.obolibrary.org/obo/CHEBI60737 | polyurethane polymer http://purl.obolibrary.org/obo/CHEBI61642 | polystyrene polymer http://purl.obolibrary.org/obo/CHEBI61452 | poly(ethylene terephthalate) polymer http://purl.obolibrary.org/obo/CHEBI60027 | polymer http://purl.obolibrary.org/obo/CHEBI17045 | dinitrogen oxide, nitrous oxide http://purl.obolibrary.org/obo/CHEBI134024 | chlorofluorcarbon http://www.geneontology.org/formats/oboInOwlshorthand http://purl.obolibrary.org/obo/GO0042755 | eating behavior http://purl.obolibrary.org/obo/PATO0001234 | distal to http://purl.obolibrary.org/obo/PATO0002272 | parallel to http://purl.obolibrary.org/obo/PATO0001360 | filamentous http://purl.obolibrary.org/obo/PATO0001608 | patchy http://purl.obolibrary.org/obo/PATO0002215 | falciform http://purl.obolibrary.org/obo/PATO0002386 | anvil http://purl.obolibrary.org/obo/PATO0000404 | coiled http://purl.obolibrary.org/obo/PATO0000405 | curled http://purl.obolibrary.org/obo/PATO0002165 | drooping http://purl.obolibrary.org/obo/PATO0040008 | fringed http://purl.obolibrary.org/obo/PATO0002311 | fimbriated http://purl.obolibrary.org/obo/PATO0002521 | funnel-shaped http://purl.obolibrary.org/obo/PATO0001960 | interdigitated http://purl.obolibrary.org/obo/PATO0015030 | plume-shaped http://purl.obolibrary.org/obo/PATO0005005 | radiating http://purl.obolibrary.org/obo/PATO0001367 | lobate http://purl.obolibrary.org/obo/PATO0002441 | ornamented http://purl.obolibrary.org/obo/PATO0002433 | sculpted surface http://purl.obolibrary.org/obo/PATO0002335 | tholiform http://purl.obolibrary.org/obo/PATO0002121 | trabecular http://purl.obolibrary.org/obo/PATO0000634 | unilateral http://purl.obolibrary.org/obo/PATO0010001 | disconnected http://purl.obolibrary.org/obo/PATO0000642 | fused with http://purl.obolibrary.org/obo/PATO0002103 | infiltrative http://purl.obolibrary.org/obo/PATO0001846 | tangled http://purl.obolibrary.org/obo/PATO0000701 | smooth http://purl.obolibrary.org/obo/PATO0002255 | grooved http://purl.obolibrary.org/obo/PATO0000406 | curved http://purl.obolibrary.org/obo/PATO0000440 | regular spatial pattern http://purl.obolibrary.org/obo/PATO0001410 | striated http://purl.obolibrary.org/obo/PATO0001453 | detached from http://purl.obolibrary.org/obo/PATO0001935 | obtuse http://purl.obolibrary.org/obo/PATO0001171 | elastic http://purl.obolibrary.org/obo/PATO0001172 | inelastic http://purl.obolibrary.org/obo/PATO0001499 | spherical http://purl.obolibrary.org/obo/PATO0000701 | smooth http://purl.obolibrary.org/obo/PATO0000025 | composition http://purl.obolibrary.org/obo/PATO0000140 | position http://purl.obolibrary.org/obo/PATO0001997 | decreased amount http://purl.obolibrary.org/obo/patoincreasedinmagnituderelativeto http://purl.obolibrary.org/obo/PATO0000323 | white http://purl.obolibrary.org/obo/RO0000058 | is concretized as http://purl.obolibrary.org/obo/RO0002180 | has component http://purl.unep.org/sdg/SDGIO00010007 | process of educating |http://purl.unep.org/sdg/SDGIO_00010077 | waste management service

- Makefile
Published by kaiiam about 5 years ago

envo - 2020-06-10 release (full name TBA)

:warning: As always, the new terms will be available after a few days as they percolate through the ether :warning:

New Classes

• ENVO:00000379 inundation disposition
• ENVO:01001606 speed of a water current
• ENVO:01001607 water current
• ENVO:01001608 kerosene oil
• ENVO:01001609 cryospheric layer
• ENVO:01001610 active layer in a cryosphere
• ENVO:01001611 thawing process
• ENVO:01001612 material warming process
• ENVO:01001613 permafrost thawing process
• ENVO:01001614 ice-bearing permafrost
• ENVO:01001615 material cooling process
• ENVO:01001616 bare soil
• ENVO:01001617 snow accumulation process
• ENVO:01001618 ice accumulation process
• ENVO:01001619 snow and ice accumulation process
• ENVO:01001620 mass of ice and snow
• ENVO:01001621 englacial
• ENVO:01001622 englacial process
• ENVO:01001623 glacial summer surface
• ENVO:01001624 glacial bed
• ENVO:01001625 polar tundra ecosystem
• ENVO:01001629 polymetallic nodule ecosystem
• ENVO:01001630 submarine groundwater discharge process
• ENVO:01001631 groundwater discharge process
• ENVO:01001632 groundwater flow
• ENVO:01001633 agricultural pollution
• ENVO:01001634 agricultural landscape diversification process
• ENVO:01001635 biodiversity conservation process
• ENVO:01001636 insect conservation process
• ENVO:01001637 agricultural specialisation process
• ENVO:01001638 frost-susceptible soil
• ENVO:01001639 formation of a solid aerosol from liquid material in an atmosphere
• ENVO:01001640 glaciation of water droplets in a cloud
• ENVO:01001641 glaciation
• ENVO:01001642 interglacial
• ENVO:01001643 ice age
• ENVO:01001644 material primarily composed of biogenic carbonates
• ENVO:01001645 gaseous part of an atmosphere
• ENVO:01001646 amorphous solid
• ENVO:01001647 colloid suspended in a hydrosphere
• ENVO:01001648 suspended colloidal sediment
• ENVO:01001649 heavy fraction material
• ENVO:01001650 light fraction material
• ENVO:01001651 particulate matter in a hydrosphere
• ENVO:01001652 atmospheric aerosol
• ENVO:01001653 well-mixed estuary
• ENVO:01001654 aerosol formation process
• ENVO:01001655 glacial process
• ENVO:01001656 glacial retreat
• ENVO:01001657 calving of ice onto land
• ENVO:01001658 calving of ice into water
• ENVO:01001659 periglacial process
• ENVO:01001660 frost action process
• ENVO:01001661 frost jacking
• ENVO:01001662 frost sorting
• ENVO:01001663 frost wedging
• ENVO:01001664 cryoturbation of soil
• ENVO:01001665 soil cryoturbate
• ENVO:01001666 glacial run
• ENVO:01001667 thalassic
• ENVO:01001668 atmospheric frontal zone
• ENVO:01001669 mariculture process
• ENVO:01001670 open cage mariculture process
• ENVO:01001671 open cage mariculture facility
• ENVO:01001672 frontal surface of a weather front
• ENVO:01001673 fluid surface layer
• ENVO:01001674 lysocline
• ENVO:01001675 nutricline
• ENVO:01001676 marine cline
• ENVO:01001677 fluid interface layer
• ENVO:01001678 fluid layer
• ENVO:01001679 fluid front
• ENVO:01001680 gaseous front
• ENVO:01001681 weather front
• ENVO:01001682 air mass
• ENVO:01001683 gaseous surface layer
• ENVO:01001684 interface layer
• ENVO:01001686 mass of environmental material
• ENVO:01001687 mass of solid material
• ENVO:01001688 mass of fluid
• ENVO:01001689 mass of gas
• ENVO:01001690 mass of liquid
• ENVO:01001691 mass of compounded environmental materials
• ENVO:01001693 isobaric surface
• ENVO:01001694 isohaline surface
• ENVO:01001695 isopycnal surface
• ENVO:01001696 isothermal surface
• ENVO:01001697 atmospheric isobaric surface
• ENVO:01001698 polar front
• ENVO:01001701 tropical environment
• ENVO:01001702 subtropical environment
• ENVO:01001703 polar environment
• ENVO:01001704 subpolar environment
• ENVO:01001705 temperate environment
• ENVO:01001706 cold front
• ENVO:01001707 warm front
• ENVO:01001708 anafront
• ENVO:01001709 katafront
• ENVO:01001710 intertropical front
• ENVO:01001711 upper air
• ENVO:01001712 free atmosphere
• ENVO:01001713 upper front
• ENVO:01001714 occluded front
• ENVO:01001715 cold occluded front
• ENVO:01001716 warm occluded front
• ENVO:01001717 neutral occluded front
• ENVO:01001718 secondary cold front
• ENVO:01001719 katabatic wind
• ENVO:01001720 downslope katabatic wind
• ENVO:01001721 cooling-driven katabatic wind
• ENVO:01001722 foehn wind
• ENVO:01001723 adiabatic process
• ENVO:01001724 dry-adiabatic process
• ENVO:01001725 moist-adiabatic process
• ENVO:01001726 fall wind
• ENVO:01001727 bora
• ENVO:01001728 squall wind
• ENVO:01001729 nautical squall
• ENVO:01001730 jet-effect wind
• ENVO:01001731 mountain-gap wind
• ENVO:01001732 slope flow
• ENVO:01001733 anabatic wind
• ENVO:01001734 insolation process
• ENVO:01001735 cooling of a gas
• ENVO:01001736 cooling of a liquid
• ENVO:01001737 cooling of a solid
• ENVO:01001738 cooling of a fluid
• ENVO:01001739 warming of a fluid
• ENVO:01001740 warming of a gas
• ENVO:01001741 warming of a liquid
• ENVO:01001742 warming of a solid
• ENVO:01001744 drainage wind
• ENVO:01001745 quasi-stationary front
• ENVO:01001746 glacier wind
• ENVO:01001747 mass fluid flow
• ENVO:01001748 cyclonic circulation
• ENVO:01001749 wind storm
• ENVO:01001750 straight-line wind
• ENVO:01001751 downburst
• ENVO:01001752 dry macroburst
• ENVO:01001753 wet macroburst
• ENVO:01001754 microburst
• ENVO:01001755 macroburst
• ENVO:01001756 wet microburst
• ENVO:01001757 dry microburst
• ENVO:01001758 downdraft
• ENVO:01001759 vibration process
• ENVO:01001760 seismic vibration process
• ENVO:01001761 volcanic seismic vibration
• ENVO:01001762 impact-driven seismic vibration
• ENVO:01001763 impact event
• ENVO:01001764 explosion-driven seismic vibration
• ENVO:01001765 mass-wasting-driven seismic vibration
• ENVO:01001766 collapse-driven seismic vibration
• ENVO:01001767 structural collapse process
• ENVO:01001768 cave collapse
• ENVO:01001769 earthquake-driven seismic vibration
• ENVO:01001770 foreshock
• ENVO:01001771 mainshock
• ENVO:01001772 aftershock
• ENVO:01001773 thrust fault
• ENVO:01001774 blind thrust earthquake
• ENVO:01001775 blind thrust fault
• ENVO:01001776 subsurface zone of an astronomical body
• ENVO:01001777 multiplet tectonic earthquake
• ENVO:01001778 interplate earthquake
• ENVO:01001779 intraplate earthquake
• ENVO:01001780 desert ecosystem
• ENVO:01001781 part of a landmass
• ENVO:01001782 landmass
• ENVO:01001783 liquid surface of an astronomical body
• ENVO:01001784 compound astronomical body part
• ENVO:01001785 land
• ENVO:01001786 inland sea
• ENVO:01001787 aquatic ecosystem
• ENVO:01001788 marine ecosystem
• ENVO:01001789 freshwater ecosystem
• ENVO:01001790 terrestrial ecosystem
• ENVO:01001791 mediterranean forest
• ENVO:01001792 tropical broadleaf forest
• ENVO:01001793 subtropical broadleaf forest
• ENVO:01001794 temperate broadleaf forest
• ENVO:01001795 ecosystem process
• ENVO:01001796 temperate mixed forest
• ENVO:01001797 tropical mixed forest
• ENVO:01001798 tropical mixed forest biome
• ENVO:01001799 tropical dry broadleaf forest
• ENVO:01001800 tropical moist broadleaf forest
• ENVO:01001801 subtropical dry broadleaf forest
• ENVO:01001802 subtropical moist broadleaf forest
• ENVO:01001803 tropical forest
• ENVO:01001804 subtropical forest
• ENVO:01001805 temperate forest
• ENVO:01001806 tropical grassland
• ENVO:01001807 flooded grassland
• ENVO:01001808 montane grassland
• ENVO:01001809 subtropical grassland
• ENVO:01001810 mediterranean grassland
• ENVO:01001811 temperate grassland
• ENVO:01001812 subpolar grassland
• ENVO:01001813 construction
• ENVO:01001814 organic object
• ENVO:01001815 cell culturing
• ENVO:01001816 biomaterial containment unit
• ENVO:01001817 biomaterial culturing unit
• ENVO:01001818 enrichment culturing unit
• ENVO:01001819 cell culturing unit
• ENVO:01001820 cultured organic material
• ENVO:01001821 hydrothermally-influenced sediment
• ENVO:01001822 active enrichment culturing unit
• ENVO:01001825 active anaerobic enrichment culturing unit
• ENVO:01001826 active sulphate-reducing enrichment culturing unit
• ENVO:01001830 tropical biome
• ENVO:01001831 temperate biome
• ENVO:01001832 subtropical biome
• ENVO:01001833 mediterranean biome
• ENVO:01001834 subpolar biome
• ENVO:01001835 alpine biome
• ENVO:01001836 montane biome
• ENVO:01001837 subalpine biome
• ENVO:01001838 arid biome
• ENVO:01001839 safe environment for living organisms
• ENVO:01001840 safe environment
• ENVO:01001841 volcanic soil
• ENVO:01001842 momentum transfer process
• ENVO:01001843 atmosphere-ocean momentum transfer process
• ENVO:01001844 ocean surface stress
• ENVO:01001845 hoar
• ENVO:01001846 depth hoar
• ENVO:01001847 hoarfrost
• ENVO:01001848 rime
• ENVO:01001849 glaze
• ENVO:01001850 frost
• ENVO:01001851 geothermally active field
• ENVO:01001852 energy transfer process
• ENVO:01001853 periglacial
• ENVO:01001854 hydrothermal field
• ENVO:01001856 liquid accumulation process
• ENVO:01001857 outgoing longwave radiation
• ENVO:01001858 cloud cover
• ENVO:01001859 dew point
• ENVO:01001860 wind gust
• ENVO:01001861 shortwave radiation
• ENVO:01001864 photosynthetically active radiation
• ENVO:01001865 concentration of carbon dioxide in an atmosphere
• ENVO:01001866 well intervention
• ENVO:01001867 well stimulation
• ENVO:01001868 hydraulic fracturing
• ENVO:01001869 fracking liquid
• ENVO:01001870 gas well
• ENVO:01001871 pit
• ENVO:01001872 manure pit
• ENVO:01001873 hatchery
• ENVO:01001874 poultry hatchery
• ENVO:02000090 ash
• ENVO:02000126 wood ash
• ENVO:02000127 coal ash
• ENVO:02000128 fly ash
• ENVO:02000129 bottom ash
• ENVO:02000130 boiler slag
• ENVO:02000131 flue gas desulfurization material
• ENVO:02000140 fluid environmental material
• ENVO:03000122 planned burn
• ENVO:03000123 concentration of nitrate and nitrite in liquid water
• ENVO:03000127 acid rainfall
• ENVO:03000128 acidic water-based rain
• ENVO:03000129 monsoon season
• ENVO:03000130 monsoon wind
• ENVO:03000131 grass fire
• ENVO:03000132 firebreak
• ENVO:03500001 playground
• ENVO:03500002 public park
• ENVO:03500003 public sports field
• ENVO:03500004 bike path
• ENVO:03500005 anthropogenic litter
• ENVO:03500006 food desert
• ENVO:03500007 noisy environment
• ENVO:03500008 safe environment for human presence
• ENVO:03500009 attractive environment
• ENVO:03500010 shady environment
• ENVO:03500011 violent environment
• ENVO:04000003 concentration of carbon dioxide in soil
• ENVO:04000004 concentration of carbon dioxide in air
• ENVO:04000005 concentration of carbon dioxide in freshwater
• ENVO:04000006 concentration of carbon dioxide in seawater
• ENVO:04000007 lake water
• ENVO:04000008 soil organic matter
• ENVO:04000009 active permafrost layer
• ENVO:04000010 soil surface layer
• ENVO:04000011 bare soil surface layer
• ENVO:04000012 particulate organic matter
• ENVO:04000013 particulate organic carbon
• ENVO:04000014 particulate organic nitrogen
• ENVO:04000015 carbon sequestration process
• ENVO:04000016 biotic carbon sequestration
• ENVO:04000017 geological carbon sequestration
• ENVO:04000018 carbon sequestration by the ocean carbonate system
• ENVO:3200002 concentration of bromine in lake water
• ENVO:3200003 concentration of cerium in lake water
• ENVO:3200004 concentration of cobalt in lake water
• ENVO:3200005 concentration of dysprosium in lake water
• ENVO:3200006 concentration of europium in lake water
• ENVO:3200007 concentration of gadolinium in lake water
• ENVO:3200008 concentration of lanthanum in lake water
• ENVO:3200009 concentration of lithium in lake water
• ENVO:3200010 concentration of methanesulfonic acid in lake water
• ENVO:3200011 concentration of molybdenum in lake water
• ENVO:3200012 concentration of neodymium in lake water
• ENVO:3200013 concentration of niobium in lake water
• ENVO:3200014 concentration of praseodymium in lake water
• ENVO:3200015 concentration of samarium in lake water
• ENVO:3200016 concentration of silver in lake water
• ENVO:3200017 concentration of thallium in lake water
• ENVO:3200018 concentration of tin in lake water
• ENVO:3200019 concentration of titanium in lake water
• ENVO:3200020 concentration of yttrium in lake water
• ENVO:3200021 concentration of bromine in water ice
• ENVO:3200022 concentration of cerium in water ice
• ENVO:3200023 concentration of cobalt in water ice
• ENVO:3200024 concentration of dysprosium in water ice
• ENVO:3200025 concentration of europium in water ice
• ENVO:3200026 concentration of gadolinium in water ice
• ENVO:3200027 concentration of lanthanum in water ice
• ENVO:3200028 concentration of lithium in water ice
• ENVO:3200029 concentration of methanesulfonic acid in water ice
• ENVO:3200030 concentration of molybdenum in water ice
• ENVO:3200031 concentration of neodymium in water ice
• ENVO:3200032 concentration of niobium in water ice
• ENVO:3200033 concentration of praseodymium in water ice
• ENVO:3200034 concentration of samarium in water ice
• ENVO:3200035 concentration of silver in water ice
• ENVO:3200036 concentration of thallium in water ice
• ENVO:3200037 concentration of tin in water ice
• ENVO:3200038 concentration of titanium in water ice
• ENVO:3200039 concentration of yttrium in water ice
• ENVO:3200040 concentration of bromine in snow
• ENVO:3200041 concentration of cerium in snow
• ENVO:3200042 concentration of cobalt in snow
• ENVO:3200043 concentration of dysprosium in snow
• ENVO:3200044 concentration of europium in snow
• ENVO:3200045 concentration of gadolinium in snow
• ENVO:3200046 concentration of lanthanum in snow
• ENVO:3200047 concentration of lithium in snow
• ENVO:3200048 concentration of methanesulfonic acid in snow
• ENVO:3200049 concentration of molybdenum in snow
• ENVO:3200050 concentration of neodymium in snow
• ENVO:3200051 concentration of niobium in snow
• ENVO:3200052 concentration of praseodymium in snow
• ENVO:3200053 concentration of samarium in snow
• ENVO:3200054 concentration of silver in snow
• ENVO:3200055 concentration of thallium in snow
• ENVO:3200056 concentration of tin in snow
• ENVO:3200057 concentration of titanium in snow
• ENVO:3200058 concentration of yttrium in snow
• ENVO:3200059 concentration of urea in liquid water
• ENVO:3400001 area of alpine tundra
• ENVO:3400002 area of polar tundra

Obsoletions

• ENVO:00000227 vertically mixed estuary --> obsolete vertically mixed estuary
• ENVO:00000373 geothermal field --> obsolete geothermal field
• ENVO:00002004 mesoscopic physical object --> physical object of mesoscopic geological size --> obsolete physical object of mesoscopic geological size
• ENVO:00002041 ground water --> obsolete ground water
• ENVO:00002297 environmental feature --> obsolete environmental feature
• ENVO:00003075 anthropogenic abiotic mesoscopic feature --> obsolete anthropogenic abiotic mesoscopic feature
• ENVO:00005785 volcanic soil --> obsolete volcanic soil
• ENVO:01000009 biotic mesoscopic physical object --> obsolete biotic mesoscopic physical object
• ENVO:01000010 abiotic mesoscopic physical object --> obsolete abiotic mesoscopic physical object
• ENVO:01000159 organic feature --> obsolete organic feature
• ENVO:01000261 lysocline --> obsolete lysocline
• ENVO:01001387 Bathymodiolus-dominated oceanic mussel bed --> obsolete Bathymodiolus-dominated oceanic mussel bed
• ENVO:09200021 concentration of oxygen in water --> obsolete concentration of oxygen in water

Renaming

• ENVO:00000070 construction --> human construction
• ENVO:00000077 agricultural feature --> agricultural ecosystem
• ENVO:00000112 tundra --> area of tundra
• ENVO:00000444 clearing --> woodland clearing
• ENVO:00002114 contaminated sediment --> chemically enriched sediment
• ENVO:00002115 petroleum contaminated sediment --> petroleum enriched sediment
• ENVO:00002164 fossil --> fossil material
• ENVO:00002202 organically contaminated sediment --> organically enriched sediment
• ENVO:00002203 inorganically contaminated sediment --> inorganically enriched sediment
• ENVO:01000007 microbial feature --> organic object formed through microbial activity
• ENVO:01000258 cline --> fluid cline
• ENVO:01000260 nutricline --> nutricline within a water body
• ENVO:01000404 plastic --> manufactured plastic
• ENVO:01000445 disturbed area --> disturbed ecosystem
• ENVO:01000551 paraffin --> paraffin oil
• ENVO:01000635 land --> planetary landmass
• ENVO:01000872 balast water --> ballast water
• ENVO:01000996 construction process --> human-directed construction process
• ENVO:01001059 mock community --> mock community culture
• ENVO:01001066 impact event --> impact between astronomical bodies
• ENVO:03000086 permafrost thawing process --> ice-bearing permafrost thawing process
• ENVO:03000089 methane-sourced permafrost crater --> permafrost crater derived from a methane explosion
• ENVO:3100014 concentration of fucoxanthin in water --> concentration of fucoxanthin in liquid water
• ENVO:3100022 concentration of nitrate in water --> concentration of nitrate in liquid water
• ENVO:3100023 concentration of nitrite in water --> concentration of nitrite in liquid water

- Makefile
Published by cmungall almost 6 years ago

envo - Ex altiora et profundis, Ex elementis, vita, siderum, et hominibus

:warning: As always, the new terms will be available after a few days as they percolate through the ether :warning:

New editors!

We're happy to welcome Steven Chong and Mark Schildhauer as co-editors. Using our contribution guidelines, they'll be adding valuable cryosphere and carbon cycling terms to support their work with DataONE and related projects.

Remember, ENVO is a community resource - so please consider joining our editorial team or sending us a pull request from time to time!

Eponyms for this release

Ex Altiora (from the heights)

xref to The Magnus Archives

water-based cloud high-elevation mountain

Ex Profundis (from the depths)

Bathymodiolus-dominated oceanic mussel bed water ice core

Ex Elementis (from the elements)

fire whirl multiple vortex tornado iceberg liquid astronomical body part

Ex vita (from life)

necromass cloud forest silvagenitus cloud

Ex Siderum (from the stars)

astronomical observatory system X-ray radiation visible spectrum radiation

Ex Hominibus (from humankind)

aircraft public prision land use process anthropogenic ecosystem conversion process

Description

In this long overdue release, a wide range of classes have been added in aid of ENVO's mission to support community requests and to provide a semantic brokering layer between classification standards in the Earth and environmental sciences. Highlights include:

• Aligning with SWEET over the cryosphere: Monthly Cryohackathons based around Ruth Duerr's extensive work on the Global Cryosphere Watch's vocabularies (and many related vocabularies) have pushed forward ENVO's alignment with ESIP's SWEET resource, using expert input on the cryosphere to do so. We'll soon complete this as a model for future thematic and expert-led semantic alignment.
• WMO cloud classification: Cloud genera have been added to bolster ENVO's atmospheric content. A range of qualities are now needed to fully axiomatise their morphologies and other characteristics.
• CMECS: Ongoing work to express the very detailed and comprehensive Coastal and Marine Classification Standard has yielded some interesting examples, merging organismal taxonomy with geoforms and tightening up semantics around stratified water masses
• Global Ocean Observing System's (GOOS) Essential Ocean Variables (EOVs): Working with UNESCO/IOC, we'll be creating classes for the EOVs, such as sea state, for semantic qualification of GOOS EOV specification sheets and data resources. This work also supports our integration with the UNESCO/IOC-IODE www.OceanBestPractices.org system.
• Land use processes: An important request from our friends over at Nature Scientific Data led to the initialisation of a land use hierarchy. This is highly extensible and we'll be coordinating this with UN Environment's Sustainable Development Goals Interface Ontology (SDGIO) in the near future.
• UNEP WCMC's mountain classification: Another valuable user request and follow-up with UNEP-WCMC resulted in a semantic expression of their new standard for mountain classification. We'll continue to weave this in to ENVO's elevation semantics in each release.

Known issues

• Semantic handling of zones: The need for and usage of BFO:site in representing environmental zones is an ongoing discussion which may take some time to stabilise. Classes are unlikely to be removed en mass, but they may jump between material and immaterial hierarchies until a policy is formed.
• Orphan classes: At the top level of the onotology, a few orphan classes from FOODON and PO may appear in the release and editors' version. This is likely an import artifact and has no known effects on reasoning. We'll try to root these out in the next release.

New Terms

abyssal clay accumulation of matter on aerosolised particles active agri-ecosystem management process adfreezing aerosolisation of dust agricultural land conversion process agriculture aircraft alpine tundra biome altocumulus castellanus cloud altocumulus cloud altostratus cloud anchored ice calf anthracite anthropogenic ecosystem conversion process anthropogenic generation of energy anthropogenic light pollution area of attached faunal communities area of attached Modiolus assemblages area of attached mussel assemblages area of drift ice area of pack ice area of sea ice area of seasonal sea ice astronomical observatory system atmospheric aerosolisation of dust atmospheric observatory system Bathymodiolus gill tissue material Bathymodiolus-dominated oceanic mussel bed Bathymodiolus-dominated oceanic mussel bed Bathymodiolus-dominated oceanic mussel reef benthic deep-sea mining biochar bitumous coal body of liquid branched valley glacier Calyptra habitat carbonate system of ocean water chemical energy chromodynamic energy cirrocumulus castellanus cloud cirrocumulus cloud cirrostratus cloud cirrostratus fibratus cloud cirrus castellanus cloud cirrus fibratus cloud cirrus spissatus cloud cirrus uncinus cloud cloud forest coal mining coal power plant coke colloidal suspension congelation ice in a fresh water body congelation sea ice cryopeg cumulonimbus cloud cumulus cloud dioxygen dissolved in marine water domestic building drift ice mass drifting sea ice mass ecological province elastic energy electric energy energy fast ice fire whirl flattened elevation flaw lead floating ice calf floeberg fluid astronomical body part forest floor forestry fossil fuel power plant frazil freezing of water into water ice freezing freshwater congelation ice freshwater ice friable-frozen soil frost heave frost heaving process frost-formed hummock frozen land frozen lead frozen soil gamma-ray radiation gas power station gaseous astronomical body part gel generation of energy from coal generation of energy from oil geothermal energy gill tissue material glacial surface layer velocity glacial surface layer glacier ice field glacier snout gravitational energy hard-frozen soil haze formation event haze formation process haze high-elevation mountain homogenitus cloud homomutatus cloud hydrocarbon-based environmental material hydrogel ice calf ice cave congelation ice ice lead ice surface layer iceberg infrared radiation infrasound inorganic macronutrient dissolved in ocean water intertidal ecosystem intrusion ionization energy ionizing radiation kinetic energy laboratory environment laboratory facility land conversion process land ice mass land use process landspout lignite power plant lignite liquid astronomical body part magnetic energy marine bed marine faunal bed marine mining marine observatory system mass ice flow material congelation process mechanical wave energy microwave radiation mid-elevation mountain mining mist mixed potential and kinetic energy moonmoon multiple vortex tornado mussel bed mussel gill tissue material mussel reef necromass neritic mussel bed neritic mussel reef nimbostratus cloud nuclear energy observatory system observing system ocean thermal power station oceanic mussel bed oceanic mussel reef omics observatory system opencast mining oxygen cycling pack ice mass permafrost congelation ice planned deforestation planned environmental usage process plastic-frozen soil polar mountain potential energy protected area public prision quarrying quicksand radiant energy radiation from a manufactured product radio wave radiation rain rest energy satellite imaging of a planet satellite imaging sea bed mining sea ice field sea ice hummock sea ice mass sea ice variability sea state sea surface height sea surface layer sea-ice lead shore lead silvagenitus cloud simple valley glacier solar power station sound wave energy spur stellar radiation energy stratocumulus castellanus cloud stratocumulus cloud stratus cloud sub-bitumous coal surface layer of a water body surface of an astronomical body tabular iceberg temperate mountain temperature of sea surface terrestrial ecoregion terrestrial ice calf terrestrial mining terrestrial mountain terrestrial observatory system thermal energy thermokarst formation process tidal power plant tornado tributary glacier tropical mountain two-dimensional fiat ice surface two-dimensional fiat water ice surface ultisol ultraviolet radiation UNEP-WCMC class 1 mountain UNEP-WCMC class 2 mountain UNEP-WCMC class 3 mountain UNEP-WCMC class 4 mountain UNEP-WCMC class 5 mountain UNEP-WCMC class 6 mountain UNEP-WCMC class 7 mountain usage of an environment for business usage of an environment for community and social services usage of an environment for defence usage of an environment for industry usage of an environment for infrastructure and utilities usage of an environment for recreation usage of an environment for residential activity usage of an environment for retail activity usage of an environment for transportation visible spectrum radiation from a manufactured product visible spectrum radiation water ice core water ice surface layer water-based cloud water-based rain water-body-derived ice waterspout wind wave energy X-ray radiation

- Makefile
Published by pbuttigieg about 7 years ago

envo - Protected planet

Eponyms for this release

IUCN protected landscape/seascape IUCN strict nature reserve IUCN protected area with sustainable use of natural resources

Description

This backdated release captures progress across several development threads. Major themes include: * The expression of IUCN protected area classification for use in SDGIO and other resources handling socio-ecological protection * Expression of more CMECs classes to enhance marine semantics * Addition of terms to support GFBio data brokerage to PANGAEA and ENA/EBI * Further development of environmental zone semantics, with waste disposal use cases * Further refinement of process hierarchies for generalisabilityF * Extension of atmospheric semantics across cloud and aerosol formation processes * Initialisation of dust patterns linked to natural and anthropogenic sources * Exploration of radiation semantics (processes, dispositions, material entities) * Import of FOODON classes required by the envoMEO subse now linked to the MEO vocabulary in MicrobeDB.jp

A large number of terms from other ontologies were imported to allow denser axiomatisation. However, many of these are likely to be pruned back in subsequent releases to improve stability. As shown in the commit log, we have also trimmed away imports which 1) are not heavily woven in to ENVO semantics and 2) are causing errors due to autophagic imports of stale ontologies.

New Terms

acidic soil acidic volcanic ash active ecosystem management process advective transport process aerosol formation event aerosol formation process agricultural process agronomic process algal material alluvial deposit alluvial sediment alluvium alpine tundra ecosystem aluminium dust anchor ice animal aquaculture process animal husbandry anthropised terrestrial environmental zone aquatic estuarine layer aquatic natural environment arable land arable or pasturable land arable area designated for human defecation area designated for waste storage area of developed space area of low atmospheric pressure area protected according to IUCN guidelines asphalt road atmospheric aerosol formation event atmospheric secondary aerosol formation process atmospheric wind direction atmospheric wind speed atmospheric zone barium dust Bondon cheese environment brackish water body brown sea ice brush fire bush area bush fire canopy cirrus cloud climate system cnidarian-associated environment coastal shrimp pond commercial building concrete road conservation-focused active ecosystem management process constructed pavement convective storm cosmic ray shielding disposition crater zone crop canopy cropland ecosystem crustacean farming process cyclone defence against flooding desert diurnal marine tidal flow process diurnal marine tidal flow zone driveway ecosystem decay ecosystem fragment ecosystem fragmentation process environment associated with an aquatic invertebrate environmental zone of processual equilibrium erosion estuarine coastal lower water column estuarine coastal pycnocline estuarine coastal surface layer estuarine coastal upper water column estuarine open water lower water column estuarine open water pycnocline estuarine open water surface layer estuarine open water upper water column estuarine tidal riverine coastal lower water column estuarine tidal riverine coastal pycnocline estuarine tidal riverine coastal surface layer estuarine tidal riverine coastal upper water column estuarine tidal riverine open water lower water column estuarine tidal riverine open water pycnocline estuarine tidal riverine open water surface layer estuarine tidal riverine open water upper water column extra-tropical cyclone finfish farming process floating ice mass forest canopy forest ecosystem fresh water body freshwater macrophyte farming process freshwater seep riverine anchor ice gamma-ray stellar radiation geodiversity glacial equlibrium line glacial ice accumulation zone grassland ecosystem habitat fragmentation process Hill sphere holothurian digestive tract contents holothurian digestive tract humic kerogen hydroclimate ice accumulation zone ice decumulation zone impermeable surface layer induced magnetosphere industrial fire infrared stellar radiation intrinsic magnetosphere ionising stellar radiation IUCN habitat/species management area IUCN natural monument or feature IUCN protected area with sustainable use of natural resources IUCN protected landscape/seascape IUCN strict nature reserve IUCN wilderness area kaolin dust kerogen labile kerogen Lagrangian point land fire liquid air-water interface layer liquid layer liquid surface layer lithification lumber production process magnetosphere marine environmental zone marine tidal flow process marine tidal flow zone marine tidal flow material accumulation zone material decumulation zone material isosurface microwave stellar radiation mollusc farming process newCloud newCloud nitrogen cycling office building office Paramo pasturable land pasture fire paved parking lot phosphorous cycling planktonic kerogen plant aquaculture process primary aerosol formation process radiation shielding disposition radio wave stellar radiation ranch recalcitrant kerogen residual kerogen rhizoplane riverine anchor ice rural stormwater sacred site saline shrimp pond water saline water body sapropelic kerogen seaweed farming process secondary aerosol formation process sediment surface semi-diurnal marine tidal flow process semi-diurnal marine tidal flow zone sidewalk silica dust slate dust solid layer solid surface layer stellar radiation stormwater sulfrous kerogen sulfur cycling swamp area talc dust tended pasturable land terrestrial environmental zone terrestrial natural environment thermal pollution of an aquatic system thermal pollution tidal flow process tidal mangrove shrubland transport of child feces to a designated site transport of household waste to a designated storage site transport of waste to a designated storage site tropical marginal sea biome tropical storm tundra ecosystem ultraviolet stellar radiation urban stormwater visible spectrum stellar radiation vog volcanic crater glacier volcanic crater zone volume of hydrological precipitation warm core cyclone waste disposal process water accumulation process water ice layer water surface water-based planetary surface wetland ecosystem woodland canopy woodland ecosystem x-ray stellar radiation

New imported classes

PURL | label ----|---- http://purl.obolibrary.org/obo/AGRO00000002 | tillage process http://purl.obolibrary.org/obo/CHEBI140503 | kaolin http://purl.obolibrary.org/obo/CHEBI9171 | skatole http://purl.obolibrary.org/obo/CHEBI58454 | kynurenate http://purl.obolibrary.org/obo/CHEBI53388 | poly(hydroxybutyrate) http://purl.obolibrary.org/obo/CHEBI47032 | 1,4-dioxane http://purl.obolibrary.org/obo/CHEBI39285 | chloropicrin http://purl.obolibrary.org/obo/CHEBI35404 | chromate http://purl.obolibrary.org/obo/CHEBI33666 | polycyclic hydrocarbon http://purl.obolibrary.org/obo/CHEBI30762 | salicylate http://purl.obolibrary.org/obo/CHEBI29125 | arsenate http://purl.obolibrary.org/obo/CHEBI27798 | nitrobenzene http://purl.obolibrary.org/obo/CHEBI27856 | acetamide http://purl.obolibrary.org/obo/CHEBI27563 | arsenic http://purl.obolibrary.org/obo/CHEBI27338 | xylene http://purl.obolibrary.org/obo/CHEBI26986 | threonine http://purl.obolibrary.org/obo/CHEBI26490 | quinate http://purl.obolibrary.org/obo/CHEBI18139 | trimethylamine http://purl.obolibrary.org/obo/CHEBI17347 | testosterone http://purl.obolibrary.org/obo/CHEBI16482 | naphthalene http://purl.obolibrary.org/obo/CHEBI16454 | pantothenate http://purl.obolibrary.org/obo/CHEBI16236 | ethanol http://purl.obolibrary.org/obo/CHEBI16199 | urea http://purl.obolibrary.org/obo/CHEBI15611 | sarcosine http://purl.obolibrary.org/obo/CHEBI37133 | barium molecular entity http://purl.obolibrary.org/obo/CHEBI37134 | elemental barium http://purl.obolibrary.org/obo/CHEBI72813 | exopolysaccharide http://purl.obolibrary.org/obo/CHEBI16336 | hyaluronic acid http://purl.obolibrary.org/obo/CHEBI62968 | crystalline cellulose http://purl.obolibrary.org/obo/CHEBI16261 | chitosan http://purl.obolibrary.org/obo/CHEBI17548 | alginic acid http://purl.obolibrary.org/obo/CHEBI62967 | amorphous cellulose http://purl.obolibrary.org/obo/CHEBI17029 | chitin http://purl.obolibrary.org/obo/CHEBI8006 | Peptidoglycan http://purl.obolibrary.org/obo/CHEBI46684 | actinolite asbestos http://purl.obolibrary.org/obo/CHEBI46678 | amosite asbestos http://purl.obolibrary.org/obo/CHEBI46682 | anthophyllite asbestos http://purl.obolibrary.org/obo/CHEBI46666 | crocidolite asbestos http://purl.obolibrary.org/obo/CHEBI46676 | tremolite asbestos http://purl.obolibrary.org/obo/CHEBI46664 | chrysotile http://purl.obolibrary.org/obo/CHEBI46661) | asbestos http://purl.obolibrary.org/obo/CHEBI32178 | talc http://purl.obolibrary.org/obo/CHEBI32594 | barium http://purl.obolibrary.org/obo/CHEBI30212 | photon http://purl.obolibrary.org/obo/CHEBI30222 | neutron http://purl.obolibrary.org/obo/CHEBI24636 | proton http://purl.obolibrary.org/obo/CHEBI30216 | alpha-particle http://purl.obolibrary.org/obo/CHEBI36352 | neutrino http://purl.obolibrary.org/obo/CHEBI10545 | electron http://purl.obolibrary.org/obo/CHEBI30225 | positron http://purl.obolibrary.org/obo/CHEBI24870 | ion http://purl.obolibrary.org/obo/CHEBI26130 | pigment http://purl.obolibrary.org/obo/CHEBI46662 | mineral http://purl.obolibrary.org/obo/CHEBI82661 | diatomaceous earth http://purl.obolibrary.org/obo/CHEBI50816 | iron oxide http://purl.obolibrary.org/obo/CHEBI30187 | aluminium oxide http://purl.obolibrary.org/obo/CHEBI49936 | uranium(0) http://purl.obolibrary.org/obo/CHEBI30050 | gold(0) http://purl.obolibrary.org/obo/CHEBI82664 | iron(0) http://purl.obolibrary.org/obo/CHEBI33400 | platinum(0) http://purl.obolibrary.org/obo/CHEBI30052 | copper(0) http://purl.obolibrary.org/obo/CHEBI35170 | vanadium(0) http://purl.obolibrary.org/obo/CHEBI27889 | lead(0) http://purl.obolibrary.org/obo/CHEBI49976 | zinc dichloride http://purl.obolibrary.org/obo/CHEBI63248 | oxidant http://purl.obolibrary.org/obo/CHEBI3311 | calcium carbonate http://purl.obolibrary.org/obo/CHEBI80043 | Nodularin http://purl.obolibrary.org/obo/CHEBI2706 | Anatoxin a http://purl.obolibrary.org/obo/CHEBI48041 | microcystin http://purl.obolibrary.org/obo/CHEBI27780 | detergent http://purl.obolibrary.org/obo/CHEBI27594 | carbon http://purl.obolibrary.org/obo/CHEBI33415 | elemental carbon http://purl.obolibrary.org/obo/CHEBI86471 | pyrite http://purl.obolibrary.org/obo/CHEBI18422 | sulfur dioxide http://purl.obolibrary.org/obo/CHEBI16136 | hydrogen sulfide http://purl.obolibrary.org/obo/CHEBI29919 | hydrosulfide http://purl.obolibrary.org/obo/CHEBI61250 | brevetoxin A http://purl.obolibrary.org/obo/CHEBI80770 | Brevetoxin B http://purl.obolibrary.org/obo/CHEBI61275 | ciguatoxin http://purl.obolibrary.org/obo/CHEBI25442 | fungal toxins http://purl.obolibrary.org/obo/CHEBI27026 | toxin http://purl.obolibrary.org/obo/CHEBI34970 | saxitoxin http://purl.obolibrary.org/obo/CHEBI50594 | carbon nanotubes http://purl.obolibrary.org/obo/CHEBI26710 | sodium chloride http://purl.obolibrary.org/obo/CHEBI16908 | NADH http://purl.obolibrary.org/obo/CHEBI16474 | NADPH http://purl.obolibrary.org/obo/CHEBI15422 | ATP http://purl.obolibrary.org/obo/CHEBI15022 | electron donor http://purl.obolibrary.org/obo/CHEBI17654 | electron acceptor http://purl.obolibrary.org/obo/CHEBI15379 | dioxygen http://purl.obolibrary.org/obo/CHEBI78298 | environmental contaminant http://purl.obolibrary.org/obo/CHEBI18276 | dihydrogen http://purl.obolibrary.org/obo/CHEBI49987 | monoatomic krypton http://purl.obolibrary.org/obo/CHEBI33687 | diatomic helium http://purl.obolibrary.org/obo/CHEBI49994 | monoatomic neon http://purl.obolibrary.org/obo/CHEBI49992 | argon(•1+) http://purl.obolibrary.org/obo/CHEBI17997 | dinitrogen http://purl.obolibrary.org/obo/CHEBI15377 | water http://purl.obolibrary.org/obo/CHEBI16042 | halide anion http://purl.obolibrary.org/obo/CHEBI16134 | ammonia http://purl.obolibrary.org/obo/CHEBI16183 | methane http://purl.obolibrary.org/obo/CHEBI16189 | sulfate http://purl.obolibrary.org/obo/CHEBI16234 | hydroxide http://purl.obolibrary.org/obo/CHEBI16301 | nitrite http://purl.obolibrary.org/obo/CHEBI16526 | carbon dioxide http://purl.obolibrary.org/obo/CHEBI16646 | carbohydrate http://purl.obolibrary.org/obo/CHEBI16900 | chlorophyllide a http://purl.obolibrary.org/obo/CHEBI17045 | dinitrogen oxide http://purl.obolibrary.org/obo/CHEBI17051 | fluoride http://purl.obolibrary.org/obo/CHEBI17245 | carbon monoxide http://purl.obolibrary.org/obo/CHEBI17544 | hydrogencarbonate http://purl.obolibrary.org/obo/CHEBI17632 | nitrate http://purl.obolibrary.org/obo/CHEBI17883 | hydrogen chloride http://purl.obolibrary.org/obo/CHEBI17996 | chloride http://purl.obolibrary.org/obo/CHEBI18230 | chlorophyll a http://purl.obolibrary.org/obo/CHEBI18246 | (1?4)-?-D-glucan http://purl.obolibrary.org/obo/CHEBI18248 | iron atom http://purl.obolibrary.org/obo/CHEBI18291 | manganese atom http://purl.obolibrary.org/obo/CHEBI18310 | alkane http://purl.obolibrary.org/obo/CHEBI18367 | phosphate(3?) http://purl.obolibrary.org/obo/CHEBI22313 | alkaline earth metal atom http://purl.obolibrary.org/obo/CHEBI22314 | alkali metal atom http://purl.obolibrary.org/obo/CHEBI22563 | anion http://purl.obolibrary.org/obo/CHEBI22918 | branched-chain amino acid http://purl.obolibrary.org/obo/CHEBI22977 | cadmium atom http://purl.obolibrary.org/obo/CHEBI22984 | calcium atom http://purl.obolibrary.org/obo/CHEBI23014 | carbon oxide http://purl.obolibrary.org/obo/CHEBI23116 | chlorine atom http://purl.obolibrary.org/obo/CHEBI23367 | molecular entity http://purl.obolibrary.org/obo/CHEBI24061 | fluorine atom http://purl.obolibrary.org/obo/CHEBI24473 | halogen http://purl.obolibrary.org/obo/CHEBI24870 | ion http://purl.obolibrary.org/obo/CHEBI25016 | lead atom http://purl.obolibrary.org/obo/CHEBI25017 | leucine http://purl.obolibrary.org/obo/CHEBI25107 | magnesium atom http://purl.obolibrary.org/obo/CHEBI25111 | magnesium porphyrin http://purl.obolibrary.org/obo/CHEBI25212 | metabolite http://purl.obolibrary.org/obo/CHEBI25355 | mitochondrial respiratory-chain inhibitor http://purl.obolibrary.org/obo/CHEBI25362 | elemental molecule http://purl.obolibrary.org/obo/CHEBI25435 | mutagen http://purl.obolibrary.org/obo/CHEBI25512 | neurotransmitter http://purl.obolibrary.org/obo/CHEBI25555 | nitrogen atom http://purl.obolibrary.org/obo/CHEBI25567 | nitrous acid http://purl.obolibrary.org/obo/CHEBI25585 | nonmetal atom http://purl.obolibrary.org/obo/CHEBI25805 | oxygen atom http://purl.obolibrary.org/obo/CHEBI25812 | ozone http://purl.obolibrary.org/obo/CHEBI26216 | potassium atom http://purl.obolibrary.org/obo/CHEBI26523 | reactive oxygen species http://purl.obolibrary.org/obo/CHEBI26708 | sodium atom http://purl.obolibrary.org/obo/CHEBI26822 | sulfide http://purl.obolibrary.org/obo/CHEBI26833 | sulfur atom http://purl.obolibrary.org/obo/CHEBI26835 | sulfur molecular entity http://purl.obolibrary.org/obo/CHEBI27027 | micronutrient !!! Preliminary !!! http://purl.obolibrary.org/obo/CHEBI27153 | monoatomic trication http://purl.obolibrary.org/obo/CHEBI27363 | zinc atom http://purl.obolibrary.org/obo/CHEBI27560 | boron atom http://purl.obolibrary.org/obo/CHEBI27573 | silicon atom http://purl.obolibrary.org/obo/CHEBI27594 | carbon atom http://purl.obolibrary.org/obo/CHEBI28073 | chromium atom http://purl.obolibrary.org/obo/CHEBI28112 | nickel atom http://purl.obolibrary.org/obo/CHEBI28659 | phosphorus atom http://purl.obolibrary.org/obo/CHEBI28694 | copper atom http://purl.obolibrary.org/obo/CHEBI28793 | beta-D-glucan http://purl.obolibrary.org/obo/CHEBI28938 | ammonium http://purl.obolibrary.org/obo/CHEBI28966 | chlorophyll http://purl.obolibrary.org/obo/CHEBI28976 | carbonic acid http://purl.obolibrary.org/obo/CHEBI29228 | hydrogen fluoride http://purl.obolibrary.org/obo/CHEBI29233 | deuteron http://purl.obolibrary.org/obo/CHEBI29237 | deuterium atom http://purl.obolibrary.org/obo/CHEBI29337 | azanide http://purl.obolibrary.org/obo/CHEBI29412 | oxonium http://purl.obolibrary.org/obo/CHEBI29438 | methanide http://purl.obolibrary.org/obo/CHEBI30356 | isobutyl group http://purl.obolibrary.org/obo/CHEBI30496 | sulfur hexafluoride http://purl.obolibrary.org/obo/CHEBI30513 | antimony atom http://purl.obolibrary.org/obo/CHEBI30514 | caesium atom http://purl.obolibrary.org/obo/CHEBI30563 | silicon dioxide http://purl.obolibrary.org/obo/CHEBI31001 | montanic acid http://purl.obolibrary.org/obo/CHEBI31002 | montanate http://purl.obolibrary.org/obo/CHEBI32627 | leucinate http://purl.obolibrary.org/obo/CHEBI32628 | leucinium http://purl.obolibrary.org/obo/CHEBI33232 | application !!! is a CHEBIrole ; sort of weird !!! http://purl.obolibrary.org/obo/CHEBI33265 | triatomic oxygen !!! preliminary !!! http://purl.obolibrary.org/obo/CHEBI33284 | nutrient http://purl.obolibrary.org/obo/CHEBI33286 | agrochemical http://purl.obolibrary.org/obo/CHEBI33287 | fertilizer http://purl.obolibrary.org/obo/CHEBI33300 | pnictogen http://purl.obolibrary.org/obo/CHEBI33302 | pnictogen molecular entity http://purl.obolibrary.org/obo/CHEBI33303 | chalcogen http://purl.obolibrary.org/obo/CHEBI33306 | carbon group element atom http://purl.obolibrary.org/obo/CHEBI33317 | boron group element atom http://purl.obolibrary.org/obo/CHEBI33324 | strontium atom http://purl.obolibrary.org/obo/CHEBI33327 | silicon oxide http://purl.obolibrary.org/obo/CHEBI33340 | zinc group element atom http://purl.obolibrary.org/obo/CHEBI33350 | chromium group element atom http://purl.obolibrary.org/obo/CHEBI33352 | manganese group element atom http://purl.obolibrary.org/obo/CHEBI33356 | iron group element atom http://purl.obolibrary.org/obo/CHEBI33362 | nickel group element atom http://purl.obolibrary.org/obo/CHEBI33366 | copper group element atom http://purl.obolibrary.org/obo/CHEBI33432 | monoatomic chlorine http://purl.obolibrary.org/obo/CHEBI33455 | nitrogen oxoacid http://purl.obolibrary.org/obo/CHEBI33458 | nitrogen oxoanion http://purl.obolibrary.org/obo/CHEBI33482 | sulfur oxoanion http://purl.obolibrary.org/obo/CHEBI33521 | metal atom http://purl.obolibrary.org/obo/CHEBI33575 | carboxylic acid http://purl.obolibrary.org/obo/CHEBI33627 | monoatomic aluminium http://purl.obolibrary.org/obo/CHEBI33693 | oxygen hydride http://purl.obolibrary.org/obo/CHEBI33704 | alpha-amino acid http://purl.obolibrary.org/obo/CHEBI33709 | amino acid http://purl.obolibrary.org/obo/CHEBI33893 | reagent http://purl.obolibrary.org/obo/CHEBI33937 | macronutrient !!! preliminary !!! http://purl.obolibrary.org/obo/CHEBI35106 | nitrogen hydride http://purl.obolibrary.org/obo/CHEBI35107 | azane http://purl.obolibrary.org/obo/CHEBI35196 | nitrogen oxide http://purl.obolibrary.org/obo/CHEBI35204 | tracer http://purl.obolibrary.org/obo/CHEBI35209 | label http://purl.obolibrary.org/obo/CHEBI35230 | fossil fuel http://purl.obolibrary.org/obo/CHEBI35274 | ammonium ion http://purl.obolibrary.org/obo/CHEBI35480 | analgesic http://purl.obolibrary.org/obo/CHEBI35604 | carbon oxoanion http://purl.obolibrary.org/obo/CHEBI35620 | vasodilator agent http://purl.obolibrary.org/obo/CHEBI35780 | phosphate ion http://purl.obolibrary.org/obo/CHEBI36895 | monoatomic fluorine http://purl.obolibrary.org/obo/CHEBI36916 | cation http://purl.obolibrary.org/obo/CHEBI36934 | nitrogen-15 atom http://purl.obolibrary.org/obo/CHEBI37022 | amino-acid anion http://purl.obolibrary.org/obo/CHEBI37176 | mononuclear parent hydride http://purl.obolibrary.org/obo/CHEBI38252 | phorbines !!! preliminary !!! http://purl.obolibrary.org/obo/CHEBI38867 | anaesthetic http://purl.obolibrary.org/obo/CHEBI38869 | general anaesthetic http://purl.obolibrary.org/obo/CHEBI38870 | inhalation anaesthetic http://purl.obolibrary.org/obo/CHEBI41609 | carbonate http://purl.obolibrary.org/obo/CHEBI43474 | hydrogenphosphate http://purl.obolibrary.org/obo/CHEBI45696 | hydrogensulfate http://purl.obolibrary.org/obo/CHEBI46787 | solvent http://purl.obolibrary.org/obo/CHEBI48107 | nitric acid http://purl.obolibrary.org/obo/CHEBI48154 | sulfur oxide http://purl.obolibrary.org/obo/CHEBI48218 | antiseptic drug http://purl.obolibrary.org/obo/CHEBI48219 | disinfectant http://purl.obolibrary.org/obo/CHEBI48356 | protic solvent http://purl.obolibrary.org/obo/CHEBI48360 | amphiprotic solvent !!! preliminary !!! http://purl.obolibrary.org/obo/CHEBI48706 | antagonist http://purl.obolibrary.org/obo/CHEBI49470 | aluminium(3+) http://purl.obolibrary.org/obo/CHEBI49637 | hydrogen atom http://purl.obolibrary.org/obo/CHEBI50047 | organic amino compound http://purl.obolibrary.org/obo/CHEBI50094 | sulfur coordination entity http://purl.obolibrary.org/obo/CHEBI50183 | P450 inhibitor http://purl.obolibrary.org/obo/CHEBI50313 | onium cation http://purl.obolibrary.org/obo/CHEBI50406 | probe http://purl.obolibrary.org/obo/CHEBI50904 | allergen http://purl.obolibrary.org/obo/CHEBI50910 | neurotoxin http://purl.obolibrary.org/obo/CHEBI51143 | nitrogen molecular entity http://purl.obolibrary.org/obo/CHEBI52214 | ligand http://purl.obolibrary.org/obo/CHEBI52625 | inorganic hydroxy compound http://purl.obolibrary.org/obo/CHEBI53000 | epitope http://purl.obolibrary.org/obo/CHEBI58072 | carbon monoxide(1+) http://purl.obolibrary.org/obo/CHEBI58416 | chlorophyll a(1-) http://purl.obolibrary.org/obo/CHEBI58950 | very long-chain fatty acid anion http://purl.obolibrary.org/obo/CHEBI58954 | straight-chain saturated fatty acid anion http://purl.obolibrary.org/obo/CHEBI59163 | biomarker http://purl.obolibrary.org/obo/CHEBI59739 | electrophilic reagent http://purl.obolibrary.org/obo/CHEBI59740 | nucleophilic reagent http://purl.obolibrary.org/obo/CHEBI60242 | monovalent inorganic cation http://purl.obolibrary.org/obo/CHEBI60643 | NMDA receptor antagonist http://purl.obolibrary.org/obo/CHEBI62488 | signalling molecule http://purl.obolibrary.org/obo/CHEBI62764 | reactive nitrogen species http://purl.obolibrary.org/obo/CHEBI63062 | aluminium cation http://purl.obolibrary.org/obo/CHEBI63248 | oxidising agent http://purl.obolibrary.org/obo/CHEBI64708 | one-carbon compound http://purl.obolibrary.org/obo/CHEBI76413 | greenhouse gas http://purl.obolibrary.org/obo/CHEBI76969 | bacterial metabolite http://purl.obolibrary.org/obo/CHEBI77746 | human metabolite http://purl.obolibrary.org/obo/CHEBI77941 | EC 3.5.1.4 (amidase) inhibitor http://purl.obolibrary.org/obo/CHEBI77971 | raising agent http://purl.obolibrary.org/obo/CHEBI77974 | food packaging gas http://purl.obolibrary.org/obo/CHEBI78017 | food propellant http://purl.obolibrary.org/obo/CHEBI78130 | fatty acid anion 28:0 http://purl.obolibrary.org/obo/CHEBI78295 | food component http://purl.obolibrary.org/obo/CHEBI78433 | refrigerant http://purl.obolibrary.org/obo/CHEBI78616 | carbohydrates and carbohydrate derivatives http://purl.obolibrary.org/obo/CHEBI79387 | trivalent inorganic anion http://purl.obolibrary.org/obo/CHEBI79388 | divalent inorganic anion http://purl.obolibrary.org/obo/CHEBI79389 | monovalent inorganic anion http://purl.obolibrary.org/obo/CHEBI8108 | pheophytin http://purl.obolibrary.org/obo/CHEBI83056 | Daphnia magna metabolite http://purl.obolibrary.org/obo/CHEBI83348 | chlorophyllide a(2-) http://purl.obolibrary.org/obo/RO0000087 | has role http://purl.obolibrary.org/obo/chebi#BFO0000051 http://purl.obolibrary.org/obo/chebi#hasfunctionalparent http://purl.obolibrary.org/obo/chebi#isconjugateacidof http://purl.obolibrary.org/obo/chebi#isconjugatebaseof http://purl.obolibrary.org/obo/IAO0000115 | definition~textual definition http://purl.obolibrary.org/obo/chebi#BRANDNAME http://purl.obolibrary.org/obo/chebi#FORMULA http://purl.obolibrary.org/obo/chebi#INN http://purl.obolibrary.org/obo/chebi#IUPACNAME http://purl.obolibrary.org/obo/chebi#InChI http://purl.obolibrary.org/obo/chebi#InChIKey http://purl.obolibrary.org/obo/chebi#SMILES http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty http://www.geneontology.org/formats/oboInOwl#hasAlternativeId http://www.geneontology.org/formats/oboInOwl#hasDbXref http://www.geneontology.org/formats/oboInOwl#hasExactSynonym http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion http://www.geneontology.org/formats/oboInOwl#hasOBONamespace http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym http://www.geneontology.org/formats/oboInOwl#hasSynonymType http://www.geneontology.org/formats/oboInOwl#id http://www.geneontology.org/formats/oboInOwl#iscyclic http://www.geneontology.org/formats/oboInOwl#shorthand http://purl.obolibrary.org/obo/FOODON00001081 | Bondon cheese http://purl.obolibrary.org/obo/FOODON00001028 | Brie http://purl.obolibrary.org/obo/FOODON00001025 | Cheddar cheese http://purl.obolibrary.org/obo/FOODON00001027 | Citrullus lanatus fruit http://purl.obolibrary.org/obo/FOODON00001154 | Cucumis melo fruit http://purl.obolibrary.org/obo/FOODON00001153 | Emmenthal http://purl.obolibrary.org/obo/FOODON00001033 | Gorgonzola http://purl.obolibrary.org/obo/FOODON00001031 | Gouda http://purl.obolibrary.org/obo/FOODON00001029 | Harzer http://purl.obolibrary.org/obo/FOODON00001128 | Limburger http://purl.obolibrary.org/obo/FOODON00001048 | Meshanger cheese http://purl.obolibrary.org/obo/FOODON00001035 | New Zealand cheddar http://purl.obolibrary.org/obo/FOODON00001295 | Pecorino cheese http://purl.obolibrary.org/obo/FOODON00001036 | Pont l'Eveque http://purl.obolibrary.org/obo/FOODON00001032 | Swiss cheese http://purl.obolibrary.org/obo/FOODON00001272 | zebra milk http://purl.obolibrary.org/obo/FOODON00001014 | yogurt http://purl.obolibrary.org/obo/FOODON00001204 | yam bean product http://purl.obolibrary.org/obo/FOODON00001259 | wine http://purl.obolibrary.org/obo/FOODON03420244 | whey http://purl.obolibrary.org/obo/FOODON00001141 | wheat product http://purl.obolibrary.org/obo/FOODON00001210 | wheat flour http://purl.obolibrary.org/obo/FOODON00001202 | winged bean product http://purl.obolibrary.org/obo/FOODON00001155 | watermelon http://purl.obolibrary.org/obo/FOODON00001203 | vetch seed product http://purl.obolibrary.org/obo/FOODON00001205 | velvet bean product http://purl.obolibrary.org/obo/FOODON00001087 | vegetable oil http://purl.obolibrary.org/obo/FOODON00001277 | unpasteurized orange juice http://purl.obolibrary.org/obo/FOODON00001296 | unpasteurized sheep milk cheese http://purl.obolibrary.org/obo/FOODON00001294 | unpasteurized goat milk cheese http://purl.obolibrary.org/obo/FOODON00001298 | unpasteurized camel milk http://purl.obolibrary.org/obo/FOODON00001286 | turkey meat product http://purl.obolibrary.org/obo/FOODON00001164 | tomato product http://purl.obolibrary.org/obo/FOODON00001050 | tempeh http://purl.obolibrary.org/obo/FOODON00001138 | tea food product http://purl.obolibrary.org/obo/FOODON00001245 | tea http://purl.obolibrary.org/obo/FOODON00001080 | tape kefan http://purl.obolibrary.org/obo/FOODON03420108 | sugar http://purl.obolibrary.org/obo/FOODON00001137 | soya food product http://purl.obolibrary.org/obo/FOODON00001235 | soy sauce http://purl.obolibrary.org/obo/FOODON03460752 | sourdough http://purl.obolibrary.org/obo/FOODON00001090 | sour milk http://purl.obolibrary.org/obo/FOODON03400865 | soup http://purl.obolibrary.org/obo/FOODON00001073 | vinegar http://purl.obolibrary.org/obo/FOODON00001232 | vinaigrette http://purl.obolibrary.org/obo/FOODON00001019 | wort http://purl.obolibrary.org/obo/FOODON00001242 | spice product http://purl.obolibrary.org/obo/FOODON00001187 | sorghum product http://purl.obolibrary.org/obo/FOODON00001163 | solanaceous fruit product http://purl.obolibrary.org/obo/FOODON00001220 | smoked sausage http://purl.obolibrary.org/obo/FOODON00001225 | smoked meat http://purl.obolibrary.org/obo/FOODON00001293 | shellfish product http://purl.obolibrary.org/obo/FOODON00001130 | sheep's milk cheese http://purl.obolibrary.org/obo/FOODON03400803 | seafood product http://purl.obolibrary.org/obo/FOODON00001104 | sea water fish egg product http://purl.obolibrary.org/obo/FOODON00001007 | sausage http://purl.obolibrary.org/obo/FOODON00001077 | salt pork http://purl.obolibrary.org/obo/FOODON00001290 | salad dressing http://purl.obolibrary.org/obo/FOODON00001076 | sake http://purl.obolibrary.org/obo/FOODON00001190 | rye product http://purl.obolibrary.org/obo/FOODON00001185 | rice product http://purl.obolibrary.org/obo/FOODON00001192 | quinoa product http://purl.obolibrary.org/obo/FOODON03400680 | pulses http://purl.obolibrary.org/obo/FOODON00001010 | processed meat product http://purl.obolibrary.org/obo/FOODON00001180 | processed food product http://purl.obolibrary.org/obo/FOODON00001229 | processed cheese product http://purl.obolibrary.org/obo/FOODON03400969 | processed cereal product http://purl.obolibrary.org/obo/FOODON00001283 | poultry product http://purl.obolibrary.org/obo/FOODON00001131 | poultry meat product http://purl.obolibrary.org/obo/FOODON00001293 | shellfish product http://purl.obolibrary.org/obo/FOODON00001289 | potato salad http://purl.obolibrary.org/obo/FOODON00001148 | potato product http://purl.obolibrary.org/obo/FOODON00001049 | pork chop http://purl.obolibrary.org/obo/FOODON00001132 | porcine meat product http://purl.obolibrary.org/obo/FOODON00001158 | pomaceous fruit product http://purl.obolibrary.org/obo/FOODON00001160 | pomaceous fruit extract http://purl.obolibrary.org/obo/FOODON00001157 | pomaceous fruit beverage http://purl.obolibrary.org/obo/FOODON00001175 | plant stem food product http://purl.obolibrary.org/obo/FOODON00001173 | plant seed food product http://purl.obolibrary.org/obo/FOODON00001147 | plant root food product http://purl.obolibrary.org/obo/FOODON00001174 | plant lipid food product http://purl.obolibrary.org/obo/FOODON00001166 | plant inflorescence food product http://purl.obolibrary.org/obo/FOODON00001057 | plant fruit food product http://purl.obolibrary.org/obo/FOODON00001015 | plant food product http://purl.obolibrary.org/obo/FOODON00001253 | plant derived beverage http://purl.obolibrary.org/obo/FOODON00001196 | pigeon pea product http://purl.obolibrary.org/obo/FOODON00001024 | pickled cabbage http://purl.obolibrary.org/obo/FOODON00001212 | pastry http://purl.obolibrary.org/obo/FOODON00001211 | pasta http://purl.obolibrary.org/obo/FOODON00001292 | oyster product http://purl.obolibrary.org/obo/FOODON00001125 | ovine cheese product http://purl.obolibrary.org/obo/FOODON00001001 | orange juice http://purl.obolibrary.org/obo/FOODON00001100 | orange fruit beverage http://purl.obolibrary.org/obo/FOODON00001189 | oats product http://purl.obolibrary.org/obo/FOODON00001233 | nut oil http://purl.obolibrary.org/obo/FOODON00001172 | nut food product http://purl.obolibrary.org/obo/FOODON03401095 | noodles http://purl.obolibrary.org/obo/FOODON00001075 | nonfat dry milk http://purl.obolibrary.org/obo/FOODON00001255 | non-fermented plant derived beverage http://purl.obolibrary.org/obo/FOODON03400187 | natural cheese http://purl.obolibrary.org/obo/FOODON00001230 | mustard http://purl.obolibrary.org/obo/FOODON00001071 | must http://purl.obolibrary.org/obo/FOODON03460156 | molasses http://purl.obolibrary.org/obo/FOODON00001070 | miso http://purl.obolibrary.org/obo/FOODON00001063 | millet beer http://purl.obolibrary.org/obo/FOODON00001188 | milet product http://purl.obolibrary.org/obo/FOODON00001048 | meshanger cheese http://purl.obolibrary.org/obo/FOODON00001152 | melon fruit product http://purl.obolibrary.org/obo/FOODON00001006 | meat food product http://purl.obolibrary.org/obo/FOODON00001234 | mayonnaise http://purl.obolibrary.org/obo/FOODON00001247 | mate http://purl.obolibrary.org/obo/FOODON03400231 | margarine http://purl.obolibrary.org/obo/FOODON00001074 | malt vinegar http://purl.obolibrary.org/obo/FOODON00001142 | maize product http://purl.obolibrary.org/obo/FOODON00001089 | maize flour http://purl.obolibrary.org/obo/FOODON00001206 | lupin seed product http://purl.obolibrary.org/obo/FOODON00001008 | liver paste http://purl.obolibrary.org/obo/FOODON00001088 | linseed oil http://purl.obolibrary.org/obo/FOODON00001195 | lentil product http://purl.obolibrary.org/obo/FOODON00001168 | leguminous food product http://purl.obolibrary.org/obo/FOODON03412637 | konjac http://purl.obolibrary.org/obo/FOODON00001086 | kefir http://purl.obolibrary.org/obo/FOODON00001047 | jeotgal http://purl.obolibrary.org/obo/FOODON03400209 | jelly http://purl.obolibrary.org/obo/FOODON00001207 | jack bean product http://purl.obolibrary.org/obo/FOODON00001177 | insect food product http://purl.obolibrary.org/obo/FOODON03400845 | infusion http://purl.obolibrary.org/obo/FOODON00001045 | ice cream http://purl.obolibrary.org/obo/FOODON00001208 | hyacinth bean product http://purl.obolibrary.org/obo/FOODON00001009 | hot dog http://purl.obolibrary.org/obo/FOODON00001246 | hot chocolate http://purl.obolibrary.org/obo/FOODON00001178 | honey product http://purl.obolibrary.org/obo/FOODON00001275 | hen's egg product http://purl.obolibrary.org/obo/FOODON00001282 | ground beef http://purl.obolibrary.org/obo/FOODON00001170 | grape fruit product http://purl.obolibrary.org/obo/FOODON00001162 | grape extract http://purl.obolibrary.org/obo/FOODON00001285 | goose meat product http://purl.obolibrary.org/obo/FOODON00001129 | goat's milk cheese http://purl.obolibrary.org/obo/FOODON03400213 | fudge http://purl.obolibrary.org/obo/FOODON00001140 | fruit juice beverage http://purl.obolibrary.org/obo/FOODON00001058 | fruit extract product http://purl.obolibrary.org/obo/FOODON00001221 | fresh smoked sausage http://purl.obolibrary.org/obo/FOODON00001222 | fresh sausage http://purl.obolibrary.org/obo/FOODON00001011 | formula milk http://purl.obolibrary.org/obo/FOODON00001193 | fonio product http://purl.obolibrary.org/obo/FOODON00001248 | fish food product http://purl.obolibrary.org/obo/FOODON00001250 | fish egg product http://purl.obolibrary.org/obo/FOODON00001004 | fermenting sugar cane juice http://purl.obolibrary.org/obo/FOODON00001005 | fermenting Elaeis Palm sap http://purl.obolibrary.org/obo/FOODON00001097 | fermented sugar cane beverage http://purl.obolibrary.org/obo/FOODON00001051 | fermented rice beverage http://purl.obolibrary.org/obo/FOODON00001254 | fermented plant derived beverage http://purl.obolibrary.org/obo/FOODON00001062 | fermented millet food product http://purl.obolibrary.org/obo/FOODON00001054 | fermented fish product http://purl.obolibrary.org/obo/FOODON00001053 | fermented dairy product http://purl.obolibrary.org/obo/FOODON00001102 | fermented cereal beverage http://purl.obolibrary.org/obo/FOODON00001003 | fermented agave juice http://purl.obolibrary.org/obo/FOODON00001103 | fermented agave beverage http://purl.obolibrary.org/obo/FOODON00001096 | fermented Elaeis Palm beverage http://purl.obolibrary.org/obo/FOODON00001274 | egg product http://purl.obolibrary.org/obo/FOODON00001284 | duck meat product http://purl.obolibrary.org/obo/FOODON00001223 | dry sausage http://purl.obolibrary.org/obo/FOODON00001194 | dry peas product http://purl.obolibrary.org/obo/FOODON00001198 | dry broad beans product http://purl.obolibrary.org/obo/FOODON00001201 | dry beans product http://purl.obolibrary.org/obo/FOODON00001091 | dried milk product http://purl.obolibrary.org/obo/FOODON00001135 | distilled fermented grain beverage http://purl.obolibrary.org/obo/FOODON00001136 | distilled fermented beverage http://purl.obolibrary.org/obo/FOODON00001256 | dairy product http://purl.obolibrary.org/obo/FOODON00001281 | custard http://purl.obolibrary.org/obo/FOODON00001039 | cured meat http://purl.obolibrary.org/obo/FOODON00001150 | cucurbit fruit product http://purl.obolibrary.org/obo/FOODON00001171 | cruciferous inflorescence food product http://purl.obolibrary.org/obo/FOODON00001169 | cruciferous food product http://purl.obolibrary.org/obo/FOODON00001231 | creamy salad dressing http://purl.obolibrary.org/obo/FOODON00001216 | cream http://purl.obolibrary.org/obo/FOODON00001200 | cowpea product http://purl.obolibrary.org/obo/FOODON00001127 | cow's milk cheese http://purl.obolibrary.org/obo/FOODON00001219 | cooked smoked sausage http://purl.obolibrary.org/obo/FOODON00001224 | cooked sausage http://purl.obolibrary.org/obo/FOODON00001181 | cooked food product http://purl.obolibrary.org/obo/FOODON00001149 | confectionery product http://purl.obolibrary.org/obo/FOODON00001133 | condiment http://purl.obolibrary.org/obo/FOODON00001017 | commercial yogurt http://purl.obolibrary.org/obo/FOODON00001139 | coffee-based beverage http://purl.obolibrary.org/obo/FOODON00001244 | coffee http://purl.obolibrary.org/obo/FOODON00001291 | clam product http://purl.obolibrary.org/obo/FOODON00001151 | citrus fruit product http://purl.obolibrary.org/obo/FOODON00001161 | citrus fruit extract http://purl.obolibrary.org/obo/FOODON00001156 | citrus fruit beverage http://purl.obolibrary.org/obo/FOODON00001280 | chocolate http://purl.obolibrary.org/obo/FOODON00001199 | chickpea product http://purl.obolibrary.org/obo/FOODON00001040 | chicken meat product http://purl.obolibrary.org/obo/FOODON00001013 | cheese product http://purl.obolibrary.org/obo/FOODON00001027 | cheddar cheese http://purl.obolibrary.org/obo/FOODON00001093 | cereal food product http://purl.obolibrary.org/obo/FOODON00001124 | caprine cheese product http://purl.obolibrary.org/obo/FOODON00001288 | cantaloupe http://purl.obolibrary.org/obo/FOODON00001026 | cane sugar http://purl.obolibrary.org/obo/FOODON00001214 | candy http://purl.obolibrary.org/obo/FOODON00001279 | cake icing http://purl.obolibrary.org/obo/FOODON00001278 | cake http://purl.obolibrary.org/obo/FOODON00001215 | cacao food product http://purl.obolibrary.org/obo/FOODON00001016 | cabbage product http://purl.obolibrary.org/obo/FOODON00001067 | buttermilk http://purl.obolibrary.org/obo/FOODON00001023 | butter http://purl.obolibrary.org/obo/FOODON00001186 | buckewheat product http://purl.obolibrary.org/obo/FOODON03420156 | brown sugar http://purl.obolibrary.org/obo/FOODON00001183 | bread http://purl.obolibrary.org/obo/FOODON00001134 | bovine meat product http://purl.obolibrary.org/obo/FOODON00001126 | bovine cheese product http://purl.obolibrary.org/obo/FOODON00001064 | bottled beer http://purl.obolibrary.org/obo/FOODON00001065 | blue cheese http://purl.obolibrary.org/obo/FOODON00001082 | bitter cheese http://purl.obolibrary.org/obo/FOODON00001020 | beer wort http://purl.obolibrary.org/obo/FOODON00001260 | beer http://purl.obolibrary.org/obo/FOODON00001218 | bee food product http://purl.obolibrary.org/obo/FOODON00001191 | barley product http://purl.obolibrary.org/obo/FOODON00001063 | bantu beer http://purl.obolibrary.org/obo/FOODON00001197 | bambara groundnut product http://purl.obolibrary.org/obo/FOODON00001061 | bacon http://purl.obolibrary.org/obo/FOODON00001060 | awamori http://purl.obolibrary.org/obo/FOODON00001251 | avian food product http://purl.obolibrary.org/obo/FOODON00001105 | avian egg product http://purl.obolibrary.org/obo/FOODON00001059 | apple juice http://purl.obolibrary.org/obo/FOODON00001276 | apple cider http://purl.obolibrary.org/obo/FOODON00001099 | apple beverage http://purl.obolibrary.org/obo/FOODON00001092 | animal food product http://purl.obolibrary.org/obo/FOODON00001052 | amasake http://purl.obolibrary.org/obo/FOODON00001184 | algal food product http://purl.obolibrary.org/obo/FOODON00001021 | acifified beer wort http://purl.obolibrary.org/obo/FOODON00001037 | Vacherin Mont d'Or http://purl.obolibrary.org/obo/GO0007588 | excretion http://purl.obolibrary.org/obo/IAO0010000 | has axiom label http://purl.obolibrary.org/obo/IAO0000600 | elucidation http://purl.obolibrary.org/obo/IAO0000426 | first order logic expression http://purl.obolibrary.org/obo/IAO0000589 | OBO foundry unique label http://purl.obolibrary.org/obo/IAO0000005 | objective specification http://purl.obolibrary.org/obo/IAO0000007 | action specification http://purl.obolibrary.org/obo/NCBITaxon365482 | Salicornia pacifica http://purl.obolibrary.org/obo/NCBITaxon4436 | Batis maritima http://purl.obolibrary.org/obo/NCBITaxon190524 | Laguncularia racemosa http://purl.obolibrary.org/obo/NCBITaxon41378 | Avicennia germinans http://purl.obolibrary.org/obo/NCBITaxon8782 | Aves http://purl.obolibrary.org/obo/NCBITaxon7705 | Holothuroidea http://purl.obolibrary.org/obo/OBI0000968 | culture medium http://purl.obolibrary.org/obo/OBI0000011 | planned process http://purl.obolibrary.org/obo/PATO0001420 | buoyancy http://purl.obolibrary.org/obo/PATO0002107 | peripheral http://purl.obolibrary.org/obo/PATO0001191 | medial to http://purl.obolibrary.org/obo/PATO0001193 | lateral to http://purl.obolibrary.org/obo/PATO0001234 | distal to http://purl.obolibrary.org/obo/PATO0002272 | parallel to http://purl.obolibrary.org/obo/PATO0001792 | left side of http://purl.obolibrary.org/obo/PATO0001793 | right side of http://purl.obolibrary.org/obo/PATO0000631 | prostrate http://purl.obolibrary.org/obo/PATO0000622 | erect http://purl.obolibrary.org/obo/PATO0002260 | semi-erect http://purl.obolibrary.org/obo/PATO0002518 | flush http://purl.obolibrary.org/obo/PATO0001653 | aligned with http://purl.obolibrary.org/obo/PATO0002173 | misaligned towards http://purl.obolibrary.org/obo/PATO0002174 | misaligned away from http://purl.obolibrary.org/obo/PATO0002435 | abut http://purl.obolibrary.org/obo/PATO0000618 | bi-lateral http://purl.obolibrary.org/obo/PATO0002350 | cauline to http://purl.obolibrary.org/obo/PATO0002483 | external to http://purl.obolibrary.org/obo/PATO0002463 | extends to http://purl.obolibrary.org/obo/PATO0002233 | far from http://purl.obolibrary.org/obo/PATO0001195 | proximal to http://purl.obolibrary.org/obo/PATO0002181 | displaced http://purl.obolibrary.org/obo/PATO0001630 | dispersed http://purl.obolibrary.org/obo/PATO0002349 | basal to http://purl.obolibrary.org/obo/PATO0001632 | anterior to http://purl.obolibrary.org/obo/PATO0002443 | level with http://purl.obolibrary.org/obo/PATO0001933 | opposite http://purl.obolibrary.org/obo/PATO0002436 | offset http://purl.obolibrary.org/obo/PATO0002513 | oblique to http://purl.obolibrary.org/obo/PATO0045040 | normal position http://purl.obolibrary.org/obo/PATO0000629 | misrouted http://purl.obolibrary.org/obo/PATO0002268 | centered http://purl.obolibrary.org/obo/PATO0000366 | left http://purl.obolibrary.org/obo/PATO0000367 | right http://purl.obolibrary.org/obo/PATO0000365 | down http://purl.obolibrary.org/obo/PATO0000370 | up http://purl.obolibrary.org/obo/PATO0001900 | front http://purl.obolibrary.org/obo/PATO0001901 | back http://purl.obolibrary.org/obo/PATO0001902 | unidirectional http://purl.obolibrary.org/obo/PATO0001903 | bi-directional http://purl.obolibrary.org/obo/PATO0001904 | circling direction http://purl.obolibrary.org/obo/PATO0045092 | east http://purl.obolibrary.org/obo/PATO0045094 | west http://purl.obolibrary.org/obo/PATO0045093 | south http://purl.obolibrary.org/obo/PATO0045091 | north http://purl.obolibrary.org/obo/PATO0045044 | normal pressure http://purl.obolibrary.org/obo/PATO0001576 | increased pressure http://purl.obolibrary.org/obo/PATO0001575 | decreased pressure http://purl.obolibrary.org/obo/PATO0000952 | brown http://purl.obolibrary.org/obo/PATO0045050 | normal size http://purl.obolibrary.org/obo/PATO0000587 | decreased size http://purl.obolibrary.org/obo/PATO0000586 | increased size http://purl.obolibrary.org/obo/PATO0000599 | decreased width http://purl.obolibrary.org/obo/PATO0000600 | increased width http://purl.obolibrary.org/obo/PATO0045061 | normal width http://purl.obolibrary.org/obo/PATO0045051 | normal area http://purl.obolibrary.org/obo/PATO0002057 | increased area http://purl.obolibrary.org/obo/PATO0000303 | increased speed http://purl.obolibrary.org/obo/PATO0000304 | decreased speed http://purl.obolibrary.org/obo/PATO0001522 | sound speed http://purl.obolibrary.org/obo/PATO0045063 | normal speed http://purl.obolibrary.org/obo/PATO0001030 | flux http://purl.obolibrary.org/obo/PATO0001028 | acceleration http://purl.obolibrary.org/obo/PATO0001023 | momentum http://purl.obolibrary.org/obo/PATO0002242 | velocity http://purl.obolibrary.org/obo/PATO0001413 | angular velocity http://purl.obolibrary.org/obo/PATO0002471 | increased velocity http://purl.obolibrary.org/obo/PATO0002472 | decreased velocity http://purl.obolibrary.org/obo/PATO0045079 | normal velocity http://purl.obolibrary.org/obo/PATO0001596 | increased depth http://purl.obolibrary.org/obo/PATO0045052 | normal depth http://purl.obolibrary.org/obo/PATO0045060 | normal volume http://purl.obolibrary.org/obo/PATO0015022 | combustible http://purl.obolibrary.org/obo/patodecreasedinmagnituderelativeto http://purl.obolibrary.org/obo/patoincreasedinmagnituderelativeto http://purl.obolibrary.org/obo/PCO1000004 | microbial community http://purl.obolibrary.org/obo/PCO0000002 | ecological community http://purl.obolibrary.org/obo/PCO0000001 | population |http://purl.unep.org/sdg/SDGIO00010068 natural asset role |http://purl.unep.org/sdg/SDGIO00010054 natural asset |http://purl.unep.org/sdg/SDGIO00010053 natural capital |http://purl.unep.org/sdg/SDGIO00000034 cultural ecosystem service |http://purl.unep.org/sdg/SDGIO00000031 'provisioning ecosystem service' |http://purl.unep.org/sdg/SDGIO00000032 'regulating ecosystem service' |http://purl.unep.org/sdg/SDGIO00000033 'supporting ecosystem service' |http://purl.unep.org/sdg/SDGIO00000014 exposure process |http://purl.unep.org/sdg/SDGIO00010079 'electrical service' |http://purl.unep.org/sdg/SDGIO00010080 'emergency service' |http://purl.unep.org/sdg/SDGIO00010006 'essential service' |http://purl.unep.org/sdg/SDGIO00010015 'health care service' |http://purl.unep.org/sdg/SDGIO00000029 'sanitation service' |http://purl.unep.org/sdg/SDGIO00010016 'social protection service' |http://purl.unep.org/sdg/SDGIO00010078 'transportation service' |http://purl.unep.org/sdg/SDGIO00010077 'waste management service' |http://purl.unep.org/sdg/SDGIO00010076 'water and sanitation service' |http://purl.unep.org/sdg/SDGIO00010025 'basic service' |http://purl.unep.org/sdg/SDGIO00000004 'sustainable development process' |http://purl.unep.org/sdg/SDGIO00000011 'use of a resource' |http://purl.unep.org/sdg/SDGIO00000019 exposure to the flooding of a contaminated lake |http://purl.unep.org/sdg/SDGIO00000018 exposure to contaminated water |http://purl.unep.org/sdg/SDGIO00010008 process of being educated |http://purl.unep.org/sdg/SDGIO00010007 process of educating http://purl.obolibrary.org/obo/UBERON0002271 | periventricular zone of hypothalamus http://purl.obolibrary.org/obo/UBERON0004902 | urogenital sinus epithelium http://purl.obolibrary.org/obo/UBERON0001988 | feces http://purl.obolibrary.org/obo/UBERON0001088 | urine http://purl.obolibrary.org/obo/UBERON0007109 | meconium http://purl.obolibrary.org/obo/UBERON0000912 | mucus http://purl.obolibrary.org/obo/UBERON0000176 | oronasal secretion http://purl.obolibrary.org/obo/UBERON0000175 | pleural effusion http://purl.obolibrary.org/obo/UBERON0001836 | saliva http://purl.obolibrary.org/obo/UBERON0001090 | synovial fluid http://purl.obolibrary.org/obo/UBERON0001866 | sebum http://purl.obolibrary.org/obo/UBERON0002391 | lymph http://purl.obolibrary.org/obo/UBERON0001970 | bile http://purl.obolibrary.org/obo/UBERON0001359 | cerebrospinal fluid http://purl.obolibrary.org/obo/UBERON0001969 | blood plasma http://purl.obolibrary.org/obo/UBERON0001913 | milk http://purl.obolibrary.org/obo/UBERON0000910 | chyme http://purl.obolibrary.org/obo/UBERON0000911 | chyle http://purl.obolibrary.org/obo/UBERON0000172 | vomit http://purl.obolibrary.org/obo/UBERON0036016 | honey http://purl.obolibrary.org/obo/UBERON0000177 | pus http://purl.obolibrary.org/obo/UBERON0001089 | sweat http://purl.obolibrary.org/obo/UBERON0002297 | cerumen

Commit log

commit 2471a596b24fa8f3d1091dac530475dd055ca8eb Author: cmungall Date: Wed May 16 19:07:49 2018 -0700

regen

commit f60a8a487046229306904be9200dd76991180aa6 Author: cmungall Date: Wed May 16 19:03:38 2018 -0700

Removing CLO import and its one axiom, CLO has a very stale GO which causes issues, see #609

commit d05fdb54cf472e17e04eb829abe82b5acb62d25b Author: cmungall Date: Wed May 16 16:51:20 2018 -0700

Removing flopo import and 4 flopo-referencing axioms
Some alternate form of these axioms may be added back later
Fixes #612

commit cf03c3a57e7a2774559d6b2f45ac3060fbf7fac2 Author: cmungall Date: Wed May 16 16:48:48 2018 -0700

Regenerated imports
Success with foodon - needs a quite arcane series of owltools commands to
be able to remove the stale ENVO subset whilst retaining linkages

commit 2c684cd87c28f0231694a3943cc30c7ee273708b Author: cmungall Date: Wed May 16 14:19:36 2018 -0700

removing OMP import, #609

commit eef3063c8082d29013d435dd6000dba7e2db4c0e Author: cmungall Date: Wed May 16 10:58:28 2018 -0700

removing stray sdgio declaration, see #609

commit 922bcd98d9ab9e8d06a9f01ebfcc7323f9614db8 Author: cmungall Date: Wed May 16 10:56:30 2018 -0700

tweaking Makefile as stopgap measure to stop self-reference, see #610

commit 97680337615dc4c628bf492879ac49219f0fd48d Author: cmungall Date: Wed May 16 08:55:29 2018 -0700

regenerated SDGIO import without ENVO - we will still omit this from this next release, see #610

commit 2f76fb105033f5eef573e09ffa6c5f53df328909 Author: cmungall Date: Wed May 16 08:52:09 2018 -0700

temp removal of axiom connecting arable land to AGRO, fixes #611

commit 41ad6113b0ec87718aa95f7045a3b004367dfa9b Author: cmungall Date: Wed May 16 08:32:08 2018 -0700

Removed aerosol formation class with SDGIO, fixes #609

commit f0d48d99c7242f80852da062384ae705d01ab121 Author: cmungall Date: Wed May 16 08:31:43 2018 -0700

Removing imports to sdgio and agro, fixes #610. Removed leaking sdgio axiom, see #609

commit cdef8aea04f5c7d319f50ed66dafcd065a4d321e Author: cmungall Date: Sun May 13 09:03:47 2018 -0400

remove stale ENVO parts from foodon import

commit 057056193b1be9a00da77e1fa38cd5a095ede7f3 Author: cmungall Date: Sat May 12 15:10:58 2018 -0400

Adding target to make a debug file

commit 252cb69c14c785882f2a4659a1f9890c60ee3404 Author: cmungall Date: Sat May 12 14:53:48 2018 -0400

Fixes to pipeline in-progress

commit ea44ccc413c654c51dd0771e7edd43d761a46f36 Author: cmungall Date: Sat May 12 14:27:25 2018 -0400

fix foodon danglers

commit d1935da7efa2e2f53e179e6f79b62afa3e19fa6f Author: pbuttigieg Date: Sat May 12 19:17:09 2018 +0200

shortened Makefile and refreshed imports

commit 638823297d5a5852da49d86c8f61f0724ba4b940 Author: pbuttigieg Date: Fri May 11 03:17:10 2018 +0200

added terms.txt files for agro and sdgio imports

commit 4cc55fa042a3b41dad9a686dfd80dd2dfceb7f87 Author: pbuttigieg Date: Fri May 11 00:12:27 2018 +0200

multiple updates to zones, addressing #573 #580 and #603

commit 7c837d48570da3a94a372d44fc4b10baad13406a Author: pbuttigieg Date: Wed May 2 10:28:48 2018 +0200

Added mangrove linked CMECS semantics, xlink to PCO

commit c8828badc0e46b0ff35e0cf0d96300397f496621 Author: pbuttigieg Date: Mon Apr 30 20:06:07 2018 +0200

Addressing #602, adding aerosol formation hierarchy

commit bbc9c3222979ada4bc067aecb73327ea4ff8eb26 Author: pbuttigieg Date: Mon Apr 30 08:17:31 2018 +0200

Reimport foodon with fixes for build

commit 4e5163be979313ce10353e45af400f25bfed1858 Author: pbuttigieg Date: Fri Apr 27 19:13:50 2018 +0200

Polishing #583

commit 335004e841a3721892dadc293739fca2d97869fb Author: pbuttigieg Date: Fri Apr 27 19:01:41 2018 +0200

Addressing #593

commit 7ca32db48f03f2b75be6292f1293d95780582fb8 Author: pbuttigieg Date: Fri Apr 27 18:52:45 2018 +0200

Addressing #604

commit 10f2ef4ad68c9d0a3cc9f758d2c88174b6183ff3 Author: pbuttigieg Date: Fri Apr 27 15:26:47 2018 +0200

addressing #602

commit bb2afc0edd07d8bae8f6ec7ce698b6588bc75f6d Author: pbuttigieg Date: Fri Apr 27 10:58:18 2018 +0200

Foodon stripped of problematic axioms, attempting build check

commit 057cde4988d01b099074707a1ca91731d5f25098 Author: pbuttigieg Date: Wed Apr 25 19:21:30 2018 +0200

Addressing #557, #555, #556

commit 5a3a619fc8fef240d601292f5fae470597e8e89d Author: pbuttigieg Date: Wed Apr 25 18:50:37 2018 +0200

Addressing #585

commit 05babf84462322524483d56958ac65a5911d8129 Author: pbuttigieg Date: Wed Apr 25 18:19:19 2018 +0200

Addressing #604

commit e0e3fb5546251046a689075c4925b771238492a4 Merge: 42fcf16 c7e1fa5 Author: pbuttigieg Date: Wed Apr 25 17:21:30 2018 +0200

Merge branch 'master' of https://github.com/EnvironmentOntology/envo

commit 42fcf1648c6eed65fe784a4163bb2aed47545c78 Author: pbuttigieg Date: Wed Apr 25 17:21:18 2018 +0200

finished substituting has_condition

commit c7e1fa59346bd3e05a771c0e6a00eed60e8a3cde Author: Pier Luigi Buttigieg Date: Wed Apr 25 16:37:24 2018 +0200

Update README.md

commit d78cf89c00755e01c0ceb4afc4bd2405f11e1457 Author: pbuttigieg Date: Wed Apr 25 15:42:47 2018 +0200

Unlink Bondon environment from the now information-based FOODON class: https://github.com/FoodOntology/foodon/issues/42

commit 4358853e6a2e0b2773f742db35f39661afef7edc Author: pbuttigieg Date: Wed Apr 25 14:57:09 2018 +0200

consolidating edits and prepping for release

commit 9e52c7d57b7390b083dc73805c4f658c96b88ff7 Author: pbuttigieg Date: Mon Apr 9 08:25:44 2018 +0200

further CMECs edits, attempt to fix build with FOODON refresh

commit 32a78c82d590f1bdd0f49fc88b2a42c934b90768 Author: pbuttigieg Date: Fri Apr 6 17:47:07 2018 +0200

Expanded imports and added CMECS semantics for estuarine layers and tidal flows

commit 3dbf42b556abbe432b1c59b056ce189ea4029d87 Author: pbuttigieg Date: Wed Mar 21 16:58:28 2018 +0100

refreshing and extending IAO import, FOODON import

commit da0a18603540a29efdaaa8388d9fe0aecf37d7b4 Author: pbuttigieg Date: Wed Mar 21 16:43:42 2018 +0100

extended quality repertoire from PATO, initialised cyclone semantics

commit bd75915cec59526b87c32f70685a17b5689bb289 Author: pbuttigieg Date: Wed Mar 21 15:39:10 2018 +0100

logic fix for combustion processes

commit fa7abfec6396676effcd6293e1d9fb3fd64eb916 Author: pbuttigieg Date: Wed Mar 21 15:36:33 2018 +0100

Adding more classes for #247

commit a04bb7d30cf354a03289d065eecd165da82f012f Author: pbuttigieg Date: Wed Mar 21 14:23:08 2018 +0100

Added SDGIO import routines for ecosystem services, natural capital, and UN sustainable development semantics, etc.

commit 46688a459c27e0aee5fa287283d2c33d2de7c519 Author: pbuttigieg Date: Wed Mar 21 00:02:38 2018 +0100

added mysteriously missing classes to the new chebi_terms.txt file

commit 821754a0003e326d2551dd89d92b749e326286bc Author: pbuttigieg Date: Tue Mar 20 23:45:11 2018 +0100

Further addressing #583, with more CHEBI content and updated Makefile

commit 26781122537b0ddffcfe2c388b604b03953ee346 Author: pbuttigieg Date: Tue Mar 20 22:52:16 2018 +0100

Addressing #583

commit a1d889e1f82b46af876850d487216db8d9c71424 Author: pbuttigieg Date: Tue Mar 20 22:24:26 2018 +0100

improved layer semantics, added pavements

commit c65c05533ab65e29a11c4b6518d92b250ebcfedc Author: pbuttigieg Date: Tue Mar 20 17:50:40 2018 +0100

axiom fix to preserve build

commit 6f67b6a8c374a9684553e0d06f8924b1c348ee08 Author: pbuttigieg Date: Tue Mar 20 17:47:45 2018 +0100

Addressing #598

commit 1e92a6bfd3d48d6226d8271073872bece70b306b Author: pbuttigieg Date: Mon Mar 19 13:32:42 2018 +0100

aquaculturing semantics enhanced to address GFBio request DSUB-110

commit 604206d4c8dc7becf6c605ec31f2b87ea954a392 Author: pbuttigieg Date: Wed Mar 7 15:12:49 2018 +0100

addressing #593 with associated refinements to vegetated areas and their parts

commit 7578b661d6ebb390be3b260b186823bbb61de5cf Author: Pier Luigi Buttigieg Date: Fri Mar 2 17:44:40 2018 +0100

Update README.md

commit fa57f3b5cc7774f5cb6cbf056b5a6bbd52786866 Author: pbuttigieg Date: Tue Feb 27 05:52:55 2018 +0100

added basic kerogen types, relevant to #433, #11, #527

commit 7fa9012e313c415ec4945127cc42706817bd6873 Author: pbuttigieg Date: Mon Feb 26 02:19:29 2018 +0100

Addressing #580

commit 6c4add07c7b8fb6d52ab900a2bd446955e22a56c Author: pbuttigieg Date: Sun Feb 25 21:39:44 2018 +0100

Addressing #592

commit 9ffbeee459102b2151a5735e0ad74c0e0fb53b9c Author: pbuttigieg Date: Tue Feb 6 01:20:50 2018 +0100

major updates aligning to BFO and deconvoluting sites and systems, several issues addressed en passant

commit 1e5494d59cfa44e5bbc94694dc5a5b74e477cb49 Author: pbuttigieg Date: Sat Nov 4 22:02:31 2017 +0100

numerous updates, in the process of refactoring env feature, reasoner errors abound for now

commit ebfed79d0ecc765aada60d095a494613a9bf16f4 Author: pbuttigieg Date: Mon Oct 9 18:44:35 2017 +0200

fixing build, reinstate surface water

commit fd8ae573c4375a9d7319712e88c5339c6afeee56 Author: pbuttigieg Date: Mon Oct 9 18:22:17 2017 +0200

Addressing #566, #565, #564, #563,  #499, adding more semantics for ecosystem fragmentation. Cleaned up ENVO classes derived from UBERON bodily fluid branch. Extended PATO, UBERON, and NCBITaxon imports.

commit eb9b60cf16a782f4fae46fb975efeeac978a65b4 Author: pbuttigieg Date: Thu Sep 14 07:43:11 2017 +0100

continuing MEO alignment, added AGRO import, updated UBERON import to ROBOT

commit 4d2467ee7c3ad296a3221ad4c452165173b110c3 Author: pbuttigieg Date: Wed Sep 13 05:55:00 2017 +0100

addressing #562

commit 964eee7be182fa782a05365c5cfa2a846a5cb78e Author: pbuttigieg Date: Tue Sep 12 15:26:55 2017 +0100

Regenerated FOODON import following #574

commit 369cb3d38c127ea2df1a942bef9d9c5a5045d8d1 Merge: a1586f6 a9cd6ac Author: Pier Luigi Buttigieg Date: Tue Sep 12 15:17:52 2017 +0100

Merge pull request #575 from TaskeHAMANO/patch-1

Add microbial environment to export class collection from FoodOn

commit a1586f66b52a96f7a771f535dab063f4158cb924 Author: pbuttigieg Date: Tue Sep 12 14:56:05 2017 +0100

Fixing build, strange axiom emerged for aerosol formation processes

commit a9cd6ac547b21aae488ea8ec8d7863a1f2df748a Merge: 16fd7e7 be4927f Author: Shinya SUZUKI Date: Tue Sep 12 22:38:21 2017 +0900

Merge branch 'patch-1' of github.com:TaskeHAMANO/envo into patch-1

commit 16fd7e75c4b22df2ff9aa9105645ee57fba0e932 Author: Shinya SUZUKI Date: Tue Sep 12 14:56:27 2017 +0900

Added FOODON terms for ENVO-MEO-FOODON mapping

Note:
* Jelly is mapped to fruits jelly, because it is used to express "goosberry jelly" in MEO and MicrobeDB.jp.
* kojac is mapped to kojac plant, because it is used to express "kojac biome planted on the plowlands soil" in MEO and MicrobeDB.jp.

commit be4927f1b9c48976cd7b0026e01e25003bbcfeb8 Author: Shinya SUZUKI Date: Tue Sep 12 14:56:27 2017 +0900

Added FOODON terms for ENVO-MEO-FOODON mapping

commit 24fd76912eb4c2ec489b39678c327468d8272911 Author: pbuttigieg Date: Tue Sep 12 06:41:48 2017 +0200

MEO/ENVO alignment, foodon imports, and various cleanup, PCO import fix

commit 28d30cd65d3e3241a1432d0f2a24172524cb980a Author: Pier Luigi Buttigieg Date: Mon Sep 11 10:09:28 2017 +0100

Update README.Md

commit 5a59a79f2ed94e2c034846e2702ccc16c80f769a Author: Pier Luigi Buttigieg Date: Mon Sep 11 10:08:53 2017 +0100

Update README.Md

commit bd40b791ebaf9f771f00c3d8968007069d1509fd Author: pbuttigieg Date: Tue Sep 5 18:09:43 2017 +0200

Addressing conservation semantics #571 #568 #567 #570 #572

commit 097f0357671422d3d6f120a08183ea808dcc2101 Author: pbuttigieg Date: Mon Sep 4 12:39:05 2017 +0200

initial work for #526

- Makefile
Published by pbuttigieg over 7 years ago

envo - Planetary ecology

About this release

:information_source: Note that the links in this note will be live after a short delay, during which they percolate through the various indexing services which harvest ENVO.

Eponyms for this release

• desert planet
• fossil worm burrow
• ecosystem

Featured eponyms from other ontologies: * spice product (courtesy of FOODON) * melange racemique (courtesy of CHEBI)

:musical_note: Recommended listening: Dune 1984 OST

Foundations of astrogeology

In this exciting release, we have added a set of foundational classes for astrogeological semantics and planetary science, pusuant to further alignment with the relaunched SWEET ontologies, now under the coordination of the ESIP Federation. This is a further step towards bridging the OBO Foundry and Library Federation to ESIP's semantic technologies, promoting interoperation across the life- and planetary science communities. Mini-Neptunes, hot Jupiters, and mega-Earths all emerged from the protoplanetary mix which we'll continue to weave into the OBO semantic layer, along with tectonics, climates, and weather phenomena.

Ecological refinements

In addition, we celebrate the launch of the Ecological Core Ontology (ECOCORE) at the ClearEarth Hackathon with our long overdue ecosystem.

Through ECOCORE, we look forward to creating a semantic rallying point for the ecological community, as called for in workshops such as LifeWatch and EU DATs Ontology & Semantic Web for Biodiversity & Ecosystem Research. We're working closely with the recently renovated Population and Community Ontology, the Ontology of Biological Attributes, and the Neuro Behavior Ontology to build a robust and interoperating resource. More information is available here

Working in ecological semantics? Please join ECOCORE's efforts by sending an e-mail via this link.

Lacustrine extensions

With contributions from @jmkeil aligned with work in the LakeBase project, we have expanded and further axiomatised our lake-related hierarchies. As always, more work remains to be done, but we're happy to present a more exhaustive list of lake types and their axiomatisation to the community.

Technical improvements

• We've added an envoAstro subset to gather up celestial content.
• An easy-to-parse TSV file of terms in our various subsets is now available here.
• More handy reports are available (and documented) here
• Our envo.json file has been fixed

New Terms

aeolian lake ammonia ice animal manure product anoxic lake astrogeological gas astrogeological ice atmospheric escape atmospheric weather bovine dairy liquid manure caldera lake carbon dioxide ice carbon monoxide ice chthonian planet circumbinary planet climate cloud formation process composted animal manure convergent plate boundary convergent tectonic movement crater lake desert planet detritus divergent plate boundary divergent tectonic movement dwarf gas planet ecosystem environmental variability feed storage space forage material formation of liquid droplets from gaseous material in an atmosphere formation of liquid droplets in an atmosphere formation of particles in an atmosphere formation of solid particles from gaseous material in an atmosphere formation of solid particles in an atmosphere fossil worm burrow fossilization of organic material gas planet giant gas planet gravitational motion heat-treated animal manure helium planet hot Jupiter hot Neptune hydrodynamic escape hypoxic lake hypoxic water ice giant ice planet ice impact crater lake impact crater impact event iron planet Karman vortex street lake with a hypoxic hypolimnion lake with an anoxic hypolimnion lake with an oxic hypolimnion landslide lake lava planet liquid aerosol manure storage space mega-Earth mesoplanet metallic material meteorite lake meteoroid meterorite impact methane ice mini-Neptune ocean planet oxic lake oxic water particle formation process photoevaporation planetesimal plant matter poultry manure proplyd protoplanet protoplanetary disk refractory astrogeological material rift zone rockslide lake rockslide process solid aerosol space weather sub-Earth super-Earth super-Jupiter tectonic lake tectonic movement tectonic plate boundary tectonic plate subduction tectonic plate transform plate boundary transform tectonic movement volatile astrogeological material weather

New imported classes

PURL | label ----|---- http://purl.obolibrary.org/obo/OBI0000643 | has grain http://purl.obolibrary.org/obo/PATO0002253 | plate-like http://purl.obolibrary.org/obo/PATO0002254 | flattened http://purl.obolibrary.org/obo/PATO0000438 | invariant http://purl.obolibrary.org/obo/PATO0000069 | deviation(fromnormal) http://purl.obolibrary.org/obo/PATO0001958 | increased variability of size http://purl.obolibrary.org/obo/PATO0001957 | decreased variability of size http://purl.obolibrary.org/obo/PATO0005001 | variability of count http://purl.obolibrary.org/obo/PATO0001227 | variant http://purl.obolibrary.org/obo/PATO0001583 | decreased variability http://purl.obolibrary.org/obo/PATO0001584 | increased variability http://purl.obolibrary.org/obo/PATO0002374 | fluctuating http://purl.obolibrary.org/obo/PATO0001826 | decreased wetness http://purl.obolibrary.org/obo/PATO0001825 | increased wetness http://purl.obolibrary.org/obo/PATO0001790 | decreased mass density http://purl.obolibrary.org/obo/PATO0001788 | increased mass density http://purl.obolibrary.org/obo/PATO0001164 | dense http://purl.obolibrary.org/obo/PATO0001351 | area density http://purl.obolibrary.org/obo/PATO0001353 | volumetric density http://purl.obolibrary.org/obo/PATO0002141 | irregular density http://purl.obolibrary.org/obo/PATO0001756 | heat conductivity http://purl.obolibrary.org/obo/PATO0001757 | electrical conductivity http://purl.obolibrary.org/obo/PATO0001161 | diluted http://purl.obolibrary.org/obo/PATO0001162 | increased concentration http://purl.obolibrary.org/obo/RO0000091 | has disposition http://purl.obolibrary.org/obo/RO_0002351 | has member

Commit log

commit c04b9bf311dc6712f739a820cd98de2646cb0f8d Author: pbuttigieg Date: Tue Aug 22 01:47:44 2017 +0200

update Makefile, fix subset IRIs, add envoAstro export

commit 189bbc8b39868a93dc29d2abd7865c60fdb2f9f5 Author: pbuttigieg Date: Tue Aug 22 01:44:51 2017 +0200

build fix

commit b0f0c07c6185c5b9ccf7d5092e35fbe0c0aac80c Author: pbuttigieg Date: Tue Aug 22 01:36:46 2017 +0200

added more planetary classes for release

commit 62fc9d32200e4027124a0677e5b4bec08281e146 Author: pbuttigieg Date: Sat Aug 19 23:13:56 2017 +0200

added planetary semantics

commit dd6b9ae35a8af7de04573b33973e23b9ee46575b Author: pbuttigieg Date: Thu Aug 17 22:41:17 2017 +0200

closes #552

commit f8536df0f12875ff90989b2b26608bfe17b8e33f Author: Pier Luigi Buttigieg Date: Thu Aug 17 21:56:50 2017 +0200

Update README.Md

commit 0079d6d646b378fab3f6f8f3f476b6ba7682a166 Author: Pier Luigi Buttigieg Date: Thu Aug 17 21:56:03 2017 +0200

Create README.Md

commit d62a6f13e39df90d76ad2764d690be81a98bf884 Author: Pier Luigi Buttigieg Date: Thu Aug 17 21:54:03 2017 +0200

removing obsolete envo_subsets.tsv, replaced by envo_subsetTable.csv

commit 0544ec292d02ffff8a1f54ad1d64c47cff8a60ab Author: pbuttigieg Date: Thu Aug 17 20:06:24 2017 +0200

modernising and debugging report generation

commit 59ef9fa157800bf409cf85c5f72209ac10fb34d1 Author: pbuttigieg Date: Thu Aug 17 19:34:09 2017 +0200

following up on #561

commit 0be29116926ccbee8068df7702abaa832390f1bb Merge: 515926f 099f66c Author: Pier Luigi Buttigieg Date: Thu Aug 17 13:32:26 2017 -0400

Merge pull request #561 from EnvironmentOntology/marieALaporte-patch-1

add more sparql queries for export

commit 099f66c6394bd8f49a7945e2464fef499b2ca462 Author: Marie-Angélique Laporte Date: Thu Aug 17 11:23:41 2017 -0600

export envo uri as a string

commit 1ea3b64bd37578d628ae4842689e89f2db4fe3ad Author: Marie-Angélique Laporte Date: Thu Aug 17 11:22:30 2017 -0600

save envo uri as a string

commit 515926fb972740325ae1b70d674dc2d92b111913 Author: pbuttigieg Date: Thu Aug 17 19:20:40 2017 +0200

TSVifying exports in response to #561

commit f82a042c1deec29b8c2586682b099b7e5ce44a72 Author: pbuttigieg Date: Thu Aug 17 19:18:33 2017 +0200

updated catalog to remove pco bfo bridge

commit f03d6c9de75c32462ef8d63f4b9deddbd95b8879 Author: pbuttigieg Date: Thu Aug 17 19:14:14 2017 +0200

fixing build, addressing #550 and adding root fossilisation classes

commit 07fe83766fdea28b59c1522365de6959c7217bbf Author: pbuttigieg Date: Thu Aug 17 18:45:21 2017 +0200

remove PCO bridge file

commit d7add07f91ff6936e0cb9d8a157d57ec52c414dc Author: Marie-Angélique Laporte Date: Thu Aug 17 10:38:44 2017 -0600

add more sparql queries for export

consider to change the export format of the SPARQL query to TSV here: https://github.com/EnvironmentOntology/envo/blob/99a6f5c30daac88b2692aa4c7609f59f491b298f/src/envo/Makefile#L349

commit 99a6f5c30daac88b2692aa4c7609f59f491b298f Author: pbuttigieg Date: Thu Aug 17 00:56:20 2017 +0200

addressing #544

commit 689cb94f5b7cef956d524f2bfb58b89b4052135a Author: pbuttigieg Date: Thu Aug 17 00:23:39 2017 +0200

addressing #543

commit 12cf823b2b8c13dbf79ee1018b639d0146c06fc1 Author: pbuttigieg Date: Thu Aug 17 00:16:02 2017 +0200

more on tectonics for #542 and associated classes

commit f4446b5368917b15019fdc9db2d1fd8c178a249e Author: pbuttigieg Date: Wed Aug 16 21:09:22 2017 +0200

added detritus for #560

commit a4f69fe8ae5dd5ec6a1bc47563b8eacf7c2c15e6 Author: pbuttigieg Date: Wed Aug 16 17:18:45 2017 +0200

updated earthquake semantics with tectonic classes created for #542 #541

commit 00a126403753e88e121f6aa7d0ca40d81f6b9895 Author: pbuttigieg Date: Tue Aug 15 18:42:24 2017 +0200

update subsets and exports

commit 863356058778900c85ca78304588cd48efef37ce Author: pbuttigieg Date: Tue Aug 15 18:31:25 2017 +0200

Fixed JSON export thanks to @marieALaporte

commit ba88e1a32e52bcfcbece45d5816e911a48689add Author: pbuttigieg Date: Mon Aug 14 22:18:13 2017 +0200

fixed typo in rain forest synonym

commit d3a9bca51c3e6da06b869134c476284390eefab6 Author: pbuttigieg Date: Mon Aug 14 21:31:57 2017 +0200

fixed typo in Makefile

commit b706c0e334d3fff83d65071626e4f409115c4b28 Author: pbuttigieg Date: Thu Aug 10 19:52:55 2017 +0200

Axiom fix for #537

commit 77e4379260c1abf63a16082127cc0e15ca4da235 Author: pbuttigieg Date: Mon Aug 7 20:50:22 2017 +0200

Addressing #541 with tectonic semantics

commit 64879f271063216990192a137da305c22bba713f Author: pbuttigieg Date: Mon Aug 7 17:44:26 2017 +0200

addressing aerosol formation processes in #549

commit aa3a662b16f849375b997c7bfd4f37578ad36461 Author: pbuttigieg Date: Wed Aug 2 21:12:39 2017 +0200

Addressing #549 concerning atmospheric particulates

commit e20e8a5484e0d2dfba97ac3c4ede9971a5d0a1e1 Author: pbuttigieg Date: Wed Aug 2 21:10:55 2017 +0200

Addressing #549 concerning atmospheric particulates

commit cf43b0ab9901fd0805f1bbaa7f03373a35d8994b Author: pbuttigieg Date: Tue Aug 1 19:26:42 2017 +0200

more foundational semantics for climate xref #237

commit b1282f13ec1d0a5dedfc11795bda0371e09f5bc0 Author: pbuttigieg Date: Tue Aug 1 18:52:28 2017 +0200

fixing build-breaking axioms around mud

commit dc96ed0c41f001f51410a9474ef9bd17da5ac1a5 Author: pbuttigieg Date: Tue Aug 1 18:35:42 2017 +0200

Addressing #237 for foundation semantics of weather and climate

commit 74eed7fee10144233e8ebb39e3526250f606a125 Author: pbuttigieg Date: Tue Aug 1 16:01:34 2017 +0200

updated PATO import for wetlands

commit 0b5aaa6a58b83d9fee9ffa691344632e50ef1837 Author: pbuttigieg Date: Mon Jul 31 21:20:53 2017 +0200

Addressing lake-related requests: #534 #533 #546 #536 #537 #538 #539 #540

commit e911596970f2fa79478a3c6692c775552dcc7258 Author: pbuttigieg Date: Mon Jul 31 19:48:17 2017 +0200

updated pato import

commit f64cf5fa53223c485a873a2cd57a484026a339fb Author: pbuttigieg Date: Mon Jul 31 06:25:36 2017 +0200

minor syntax fixes

- Makefile
Published by pbuttigieg almost 9 years ago

envo - Meteoromics

About this release

:information_source: Note that the links in this note will be live after a short delay, during which they percolate through the various indexing services which harvest ENVO.

Eponyms for this release * meteor * The terms for the omics community in our envoEmpo.owl subset

This release features a wide range of new classes and improved axiomatisation across ENVO; however, it is primarily driven by requests from * the Earth Microbiome Project to axiomatise and integrate the project's EMPO vocabulary into ENVO and other ontologies. * Several lake-releated classes are being created to support the AquaDiva project and foundational semantics for extending atmospheric semantics have been developed.
* The continuation of work with CESAB and the generation of this synthesis centre's subset

In addition, more upper-level classes from BFO have been imported to begin the restructuring of ENVO's branches for improved axiomatisation, interoperation with other OBO resources, and clarity. Users should prepare for the environmental feature branch to be markedly restructured (most individual PURLs will not be affected, only their positioning and axioms).

:warning: Dead Simple Design Patterns were used to generate classes not mentioned in this note. Work is underway to integrate reporting into future release notes.

New Terms

acoustic radiation aerosol environment animal-associated environment construction process digestive tract environment dry river electromagnetic radiation 'environment associated with a fungal tissue environment associated with a plant part or small plant environment associated with an animal part or small animal environment determined by a biofilm on a fungal surface environment determined by a biofilm on a non-saline surface environment determined by a biofilm on a plant surface environment determined by a biofilm on a saline surface environment determined by a biofilm on an animal surface environment determined by a metazoan secretion environment determined by a plant substance environmental system determined by a material environmental system determined by a quality environmental system determined by an organism fecal environment fogbow fungi-associated environment glory groundwater halo highly saline water humic lake hydrometeor hypereutrophic lake hypereutrophic water hypersaline lake hypersaline water environment light emitted by lightning lithometeor lunar rainbow meteor mock community moderately saline water monochrome solar rainbow natural lake non-saline aerosol environment non-saline environment non-saline planetary subsurface environment non-saline sediment environment oceanic subsurface zone particle beam radiation particle radiation photometeor planetary subsurface environment plant-associated environment radiation rainbow reflection rainbow rhizosphere environment saline aerosol environment saline environment saline sediment environment sediment environment sediment permeated by freshwater sediment permeated by saline water single strain cell culture slightly saline water soil environment solar rainbow sterile water environment

New imported classes

PURL | label ----|---- http://purl.obolibrary.org/obo/BFO0000024 | fiat object part http://purl.obolibrary.org/obo/BFO0000140 | continuant fiat boundary http://purl.obolibrary.org/obo/BFO0000146 | two-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO0000142 | one-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO0000006 | spatial region http://purl.obolibrary.org/obo/BFO0000029 | site http://purl.obolibrary.org/obo/BFO0000030 | object http://purl.obolibrary.org/obo/BFO0000027 | object aggregate http://purl.obolibrary.org/obo/BFO0000011 | spatiotemporal region http://purl.obolibrary.org/obo/BFO0000035 | process boundary http://purl.obolibrary.org/obo/BFO0000008 | temporal region http://purl.obolibrary.org/obo/BFO0000038 | one-dimensional temporal region http://purl.obolibrary.org/obo/BFO0000016 disposition http://purl.obolibrary.org/obo/BFO0000023 | role http://purl.obolibrary.org/obo/BFO0000034 | function http://purl.obolibrary.org/obo/CLO0000031 | cell line http://purl.obolibrary.org/obo/FAO0000001 | fungal structure http://purl.obolibrary.org/obo/FLOPO0900023 | whole plant therophytic http://purl.obolibrary.org/obo/FLOPO0900027 | whole plant hemicryptophytic http://purl.obolibrary.org/obo/FLOPO0900028 | whole plant chamaephytic http://purl.obolibrary.org/obo/FLOPO0900029 | whole plant phanerophytic http://purl.obolibrary.org/obo/FLOPO0900030 | whole plant epiphytic http://purl.obolibrary.org/obo/FLOPO0980082 | whole plant litophytic http://purl.obolibrary.org/obo/FLOPO0900031 | whole plant cryptophytic http://purl.obolibrary.org/obo/FLOPO0900024 | whole plant geophytic http://purl.obolibrary.org/obo/FLOPO0900025 | whole plant helophytic http://purl.obolibrary.org/obo/FLOPO0900026 | whole plant hydrophytic http://purl.obolibrary.org/obo/FLOPO0980071 | whole plant annual http://purl.obolibrary.org/obo/FLOPO0980072 | whole plant biennial http://purl.obolibrary.org/obo/FLOPO0980073 | whole plant perennial http://purl.obolibrary.org/obo/FLOPO0022142 | whole plant herbaceous http://purl.obolibrary.org/obo/FLOPO0900034 | whole plant frutescent http://purl.obolibrary.org/obo/FLOPO0900035 | whole plant lianescent http://purl.obolibrary.org/obo/FLOPO0900033 | tree http://purl.obolibrary.org/obo/NCBITaxon4751 | Fungi http://purl.obolibrary.org/obo/OBI0000968 | device http://purl.obolibrary.org/obo/OBI0000401 | environment control function http://purl.obolibrary.org/obo/OBI0000968 | culture medium http://purl.obolibrary.org/obo/OMP0005005 | mesophilic growth http://purl.obolibrary.org/obo/OMP0005007 | psychrophilic growth http://purl.obolibrary.org/obo/OMP0005006 | psychrotrophic growth http://purl.obolibrary.org/obo/OMP0005004 | thermophilic growth http://purl.obolibrary.org/obo/OMP0005003 | hyperthermophilic growth http://purl.obolibrary.org/obo/PATO0001734 | semi-deciduous(plant) http://purl.obolibrary.org/obo/PATO0001732 | non-deciduous (any body part) http://purl.obolibrary.org/obo/PATO0001730 | deciduous (generic) http://purl.obolibrary.org/obo/PATO0002352 | herbaceous http://purl.obolibrary.org/obo/PATO0001306 | decreased temperature http://purl.obolibrary.org/obo/PATO0015009 | humidity http://purl.obolibrary.org/obo/PATO0015010 | increased humidity http://purl.obolibrary.org/obo/PATO0015011 | decreased humidity http://purl.obolibrary.org/obo/PATO0000690 | intermittent http://purl.obolibrary.org/obo/PATO0000318 | blue http://purl.obolibrary.org/obo/PATO0001855 | horizontal http://purl.obolibrary.org/obo/PATO0000411 | circular http://purl.obolibrary.org/obo/PATO0000964 | transparent http://purl.obolibrary.org/obo/PATO0001354 | translucent http://purl.obolibrary.org/obo/PATO0000963 | opaque http://purl.obolibrary.org/obo/PATO0001171 | elastic http://purl.obolibrary.org/obo/PATO0001172 | inelastic http://purl.obolibrary.org/obo/PATO0000689 | continuous (of a process) http://purl.obolibrary.org/obo/PATO0005011 | continuous (of a material entity) http://purl.obolibrary.org/obo/PATO0001688 | increased elevation http://purl.obolibrary.org/obo/PATO0001689 | decreased elevation http://purl.obolibrary.org/obo/PATO0000591 | increased thickness http://purl.obolibrary.org/obo/PATO0000592 | decreased thickness http://purl.obolibrary.org/obo/PATO0001781 | irregular thickness http://purl.obolibrary.org/obo/PATO0001617 | deformed http://purl.obolibrary.org/obo/PATO0000982 | permeable (to liquids) http://purl.obolibrary.org/obo/PATO0000983 | impermeable (to liquids) http://purl.obolibrary.org/obo/PATO0001412 | unstructured http://purl.obolibrary.org/obo/PATO0001411 | structured http://purl.obolibrary.org/obo/PATO0001545 | inflexible http://purl.obolibrary.org/obo/PATO0000070 | amount http://purl.obolibrary.org/obo/PATO0001536 | solubility http://purl.obolibrary.org/obo/PATO0001986 | dissolved http://purl.obolibrary.org/obo/PATO0002219 | fan-shaped http://purl.obolibrary.org/obo/PATO0002080 | broken into two pieces http://purl.obolibrary.org/obo/PATO0001444 | broken http://purl.obolibrary.org/obo/PATO0002453 | eroding http://purl.obolibrary.org/obo/PATO0002180 | straight http://purl.obolibrary.org/obo/PATO0002212 | slender http://purl.obolibrary.org/obo/PATO0001799 | ruffled http://purl.obolibrary.org/obo/PATO0002359 | broad http://purl.obolibrary.org/obo/PATO0002253 | platelike http://purl.obolibrary.org/obo/PATO0000407 | flat http://purl.obolibrary.org/obo/PATO0001444 | fractured http://purl.obolibrary.org/obo/PATO0002021 | conical http://purl.obolibrary.org/obo/PATO0001305 | increased temperature http://purl.obolibrary.org/obo/PATO0001779 | decreased strength http://purl.obolibrary.org/obo/PATO0000619 | crowded http://purl.obolibrary.org/obo/PATO0000308 | old http://purl.obolibrary.org/obo/PATO0000309 | young http://purl.obolibrary.org/obo/PATO0001546 | quality of a solid http://purl.obolibrary.org/obo/PATO0001548 | quality of a liquid http://purl.obolibrary.org/obo/PATO0001547 | quality of a gas http://purl.obolibrary.org/obo/PATO0002139 | edible http://purl.obolibrary.org/obo/PATO0002140 | inedible http://purl.obolibrary.org/obo/PATO0000337 | colorless http://purl.obolibrary.org/obo/PATO0002063 | columnar http://purl.obolibrary.org/obo/PATO0001857 | concave http://purl.obolibrary.org/obo/PATO0001485 | condensed http://purl.obolibrary.org/obo/PATO0001422 | dead http://purl.obolibrary.org/obo/PATO0001432 | decayed http://purl.obolibrary.org/obo/PATO0001731 | deciduous (plant) http://purl.obolibrary.org/obo/PATO0001733 | evergreen (plant) http://purl.obolibrary.org/obo/PATO0002058 | decreased area http://purl.obolibrary.org/obo/PATO0001899 | decreased circumference http://purl.obolibrary.org/obo/PATO0001163 | decreased concentration http://purl.obolibrary.org/obo/PATO0001472 | decreased depth http://purl.obolibrary.org/obo/PATO0002271 | decreased accumulation http://purl.obolibrary.org/obo/PATO0002270 | increased accumulation http://purl.obolibrary.org/obo/PATO0001671 | increased distribution http://purl.obolibrary.org/obo/PATO0001672 | decreased distribution http://purl.obolibrary.org/obo/PATO0001676 | increased efficiency http://purl.obolibrary.org/obo/PATO0001675 | decreased efficiency http://purl.obolibrary.org/obo/PATO0001838 | decreased fluid flow http://purl.obolibrary.org/obo/PATO0001839 | increased fluid flow http://purl.obolibrary.org/obo/PATO0001624 | decreased functionality http://purl.obolibrary.org/obo/PATO0001625 | increased functionality http://purl.obolibrary.org/obo/PATO0000381 | decreased frequency http://purl.obolibrary.org/obo/PATO0000380 | increased frequency http://purl.obolibrary.org/obo/PATO0001562 | decreased mass http://purl.obolibrary.org/obo/PATO0001563 | increased mass http://purl.obolibrary.org/obo/PATO0001713 | decreased perimeter http://purl.obolibrary.org/obo/PATO0001712 | increased perimeter http://purl.obolibrary.org/obo/PATO0000596 | decreased volume http://purl.obolibrary.org/obo/PATO0000595 | increased volume http://purl.obolibrary.org/obo/PATO0001789 | domed http://purl.obolibrary.org/obo/PATO0001824 | dry http://purl.obolibrary.org/obo/PATO0001823 | wet http://purl.obolibrary.org/obo/PATO0002064 | fenestrated http://purl.obolibrary.org/obo/PATO0001985 | frozen http://purl.obolibrary.org/obo/PATO0002124 | laminar http://purl.obolibrary.org/obo/PATO0001199 | linear http://purl.obolibrary.org/obo/PATO0001481 | sloped http://purl.obolibrary.org/obo/PATO0002143 | sloped downward http://purl.obolibrary.org/obo/PATO0000428 | sporadic http://purl.obolibrary.org/obo/PATO0002068 | stratified http://purl.obolibrary.org/obo/PATO0002416 | sunken http://purl.obolibrary.org/obo/PATO0002292 | transient http://purl.obolibrary.org/obo/PATO0002299 | tubular http://purl.obolibrary.org/obo/PATO0000967 | undulate http://purl.obolibrary.org/obo/PATO0000998 | viscous http://purl.obolibrary.org/obo/PATO0002078 | hollow http://purl.obolibrary.org/obo/PATO0001855 | horizontal http://purl.obolibrary.org/obo/PATO0001854 | vertical http://purl.obolibrary.org/obo/PATO0001430 | alkaline http://purl.obolibrary.org/obo/PATO0001429 | acidic http://purl.obolibrary.org/obo/PATO0001844 | increased acidity http://purl.obolibrary.org/obo/PATO0002140 | inedible http://purl.obolibrary.org/obo/PATO0001685 | magnetic http://purl.obolibrary.org/obo/PATO0001544 | flexible http://purl.obolibrary.org/obo/PATO0001154 | elongated http://purl.obolibrary.org/obo/PATO0000946 | oblong http://purl.obolibrary.org/obo/PATO0000622 | erect http://purl.obolibrary.org/obo/PATO0002260 | semi erect http://purl.obolibrary.org/obo/PATO0002425 | exposed http://purl.obolibrary.org/obo/PATO0001759 | granular http://purl.obolibrary.org/obo/PATO0000386 | hard http://purl.obolibrary.org/obo/PATO0001879 | U-shaped http://purl.obolibrary.org/obo/PATO0002224 | V-shaped http://purl.obolibrary.org/obo/PATO0001201 | Y-shaped http://purl.obolibrary.org/obo/PATO0001629 | aggregated http://purl.obolibrary.org/obo/PATO0001332 | amorphous http://purl.obolibrary.org/obo/PATO0001594 | arched http://purl.obolibrary.org/obo/PATO0001447 | calcified http://purl.obolibrary.org/obo/PATO0001887 | hydrophilic http://purl.obolibrary.org/obo/PATO0001885 | hydrophobic http://purl.obolibrary.org/obo/PATO0001208 | odorless http://purl.obolibrary.org/obo/PATO0000610 | open http://purl.obolibrary.org/obo/PATO0000608 | closed http://purl.obolibrary.org/obo/PATO0000609 | closure incomplete http://purl.obolibrary.org/obo/PATO0000985 | non-porous http://purl.obolibrary.org/obo/PATO0000984 | porous http://purl.obolibrary.org/obo/PATO0001646 | protruding out of http://purl.obolibrary.org/obo/PATO0001645 | protruding into http://purl.obolibrary.org/obo/PATO0001741 | radioactive http://purl.obolibrary.org/obo/PATO0001456 | anaerobic http://purl.obolibrary.org/obo/PATO0001455 | aerobic http://purl.obolibrary.org/obo/PATO0015022 | combustible http://purl.obolibrary.org/obo/PO0025161 | portion of plant substance http://purl.obolibrary.org/obo/PO0000022 | plant cuticle http://purl.obolibrary.org/obo/PO0025385 | cutin http://purl.obolibrary.org/obo/PO0025386 | cuticular wax http://purl.obolibrary.org/obo/PO0025387 | plant cuticle proper http://purl.obolibrary.org/obo/PO0025538 | plant sap http://purl.obolibrary.org/obo/PO0025603 | plant resin http://purl.obolibrary.org/obo/PO0000003 | whole plant http://purl.obolibrary.org/obo/PO0025025 | root system http://purl.obolibrary.org/obo/PO0009005 | root http://purl.obolibrary.org/obo/PO0025034 | leaf

Commit log

commit b71a3f0e3ed2bb40310243e87b06fbb062ce5f8f Author: pbuttigieg Date: Mon Jul 31 04:53:03 2017 +0200

refresh

commit d79a99184bb39ac0bbc29c322241bf9664613807 Author: pbuttigieg Date: Mon Jul 31 04:22:33 2017 +0200

added obi import file

commit 6e983b546dfcabad914a2fe161b43861a5ceec8c Author: pbuttigieg Date: Mon Jul 31 04:18:34 2017 +0200

updating imports of clo obi and cesab subsets

commit ccbcc3b8355c8708cf66c6fd7b8cab07f1547b37 Author: pbuttigieg Date: Mon Jul 31 04:13:03 2017 +0200

updated ncbi imports

commit 97a57e4005aae38df0a588c6fda920c08e715ce5 Author: pbuttigieg Date: Mon Jul 31 02:51:35 2017 +0200

added envoOmics and envoEmpo to build

commit 736c977f93e5971258061d1e1f7b9f886846ad18 Author: pbuttigieg Date: Mon Jul 31 01:59:43 2017 +0200

Build fixing

commit 89ff6b5b780014afecfad6fff48529bcc70b8f9b Author: pbuttigieg Date: Mon Jul 31 01:55:21 2017 +0200

Adding ontologised EMPO terms

commit 0646390043584d34b32dfb750d0d74fb10c146fa Author: pbuttigieg Date: Fri Jul 28 00:29:22 2017 +0200

adding radiation and fixing build

commit 57a7d0c252baf1c119c745f74b176a013642d837 Author: pbuttigieg Date: Thu Jul 27 18:31:33 2017 +0200

improved representation of plant qualities in relation to biomes

commit c1251336a3c8def6a475f4e764618c0c32bc0fc9 Author: pbuttigieg Date: Wed Jul 26 21:03:40 2017 +0200

Addressing #528 #529 #530 #531 #532

commit b9ec50ff5a0ef24380159761e77f6b1d149ec777 Author: pbuttigieg Date: Tue Jul 25 15:23:36 2017 +0200

added omp import

commit bc52e775ff2dec6f18cb01abee2a996b70e651e4 Author: pbuttigieg Date: Mon Jul 24 23:10:57 2017 +0200

residual updates to envo_edit

commit 1a8f63d38ada6249a7b838a0175683787736f925 Author: pbuttigieg Date: Mon Jul 24 23:00:50 2017 +0200

removed legacy import seeds

commit 0d4365083dce72ba2ca99763d53fa5e33c9f79f2 Author: pbuttigieg Date: Mon Jul 24 22:52:28 2017 +0200

Added FAO import, residual PO import files

commit d0f1d3345621fdd7dbbb680a8a593ab98b66fc71 Author: pbuttigieg Date: Mon Jul 24 22:19:18 2017 +0200

moved PO import to ROBOT and added plant substances

commit 713da7b892651781e7be3ef4910fef2581a89dfa Author: pbuttigieg Date: Mon Jul 17 18:59:27 2017 +0200

ROBOTified PATO import

commit 900717037ffa8b355f0bc60f1470f44b2e7b3710 Author: pbuttigieg Date: Mon Jul 17 18:48:41 2017 +0200

updated BFO and PATO imports and attempting more BFO alignments

commit 49ecd757778d41616b8ba52481e2a92fb9df117e Author: pbuttigieg Date: Mon Jul 17 18:11:56 2017 +0200

Added halo

commit 87a6bfc1f89e76fa37391075c714b793d35cc99d Author: pbuttigieg Date: Mon Jul 17 18:07:31 2017 +0200

Added more rainbows and glory

commit f17d31011e514372e1b07963931532b1811bde24 Author: pbuttigieg Date: Mon Jul 17 16:57:23 2017 +0200

added xrefs for rainbow subclasses

commit a48b91b0c08d822f2dfd270dd7f7b864b725b1fd Author: pbuttigieg Date: Fri Jul 14 07:44:22 2017 +0200

wove GO processes into ecosystem level terms

commit a56e8f48b380eba0bcb46d701de9feffe2be8b08 Author: pbuttigieg Date: Fri Jul 14 06:55:17 2017 +0200

Added rainbows

commit 4f4ee34d595025f7a440c26b322ce3cb3518425c Merge: 5cde0f9 75150fa Author: Chris Mungall
Date: Thu Jul 13 07:38:03 2017 -0700

Merge pull request #524 from EnvironmentOntology/bfo-import

Fix bug whereby ro was used for bfo mirror

commit 75150fa50599eb9b231c79085fd510d37988eeea Author: Chris Mungall
Date: Thu Jul 13 07:33:01 2017 -0700

actual fix for #233

commit 5cde0f9f894ce6a9620d02a778c4090d06ffe02f Author: pbuttigieg Date: Tue Jul 11 17:05:54 2017 +0200

addressing #523

commit b4590ac77b4a9ad8efbf59655f2bf298b66c114e Author: Chris Mungall
Date: Wed Jul 5 15:18:59 2017 -0700

Fixes #521

commit 57b4cd144c5b1f2ed8629e24e46bb70e0028ff30 Author: pbuttigieg Date: Tue Jul 4 19:23:01 2017 +0200

Addressing #520

commit dd0e414d62793ed0205e601276e65e95e52f30d5 Merge: c6533c7 1251625 Author: Pier Luigi Buttigieg Date: Tue Jul 4 19:12:08 2017 +0200

Merge pull request #518 from EnvironmentOntology/pull-517-alt

Fix for weird label generation caused by pato labels

commit c6533c7354ee91c776794b3fecc2b597f042d985 Author: pbuttigieg Date: Tue Jul 4 19:00:30 2017 +0200

test cases for EMPO

commit fc5111618ddc331d695ec6a0061c24eb561d932d Author: pbuttigieg Date: Tue Jul 4 14:51:31 2017 +0200

moving special characters from labels to synonyms for ENVO:01000750

commit 02509c0ab4f844779037f778968182c72ba0e574 Merge: 16802fb d5336ad Author: Pier Luigi Buttigieg Date: Tue Jul 4 14:32:31 2017 +0200

Merge pull request #519 from EnvironmentOntology/use-robot-slme

Fix BFO import to use ROBOT.

commit d5336ad330bc6f4d53ff7d625199a5094528b357 Author: Pier Luigi Buttigieg Date: Tue Jul 4 14:29:06 2017 +0200

Labels as comments

commit 16802fb31b7366885063ed981d29a93864fb74b1 Author: pbuttigieg Date: Tue Jul 4 14:25:03 2017 +0200

axiom fix

commit 1574dd43a0860d650187a35c667355a47ebce900 Author: pbuttigieg Date: Sat Jul 1 12:48:28 2017 +0200

improving hierarchies of enviromental systems and anthropogenic entities

commit 81e195d04b81dfb727112653a666bc5a9de44dac Author: Chris Mungall
Date: Thu Jun 29 12:25:19 2017 -0700

fixed extract modules to use robot

commit 10345acdebd3d953f45f8daab6a9840bf85b9504 Author: Chris Mungall
Date: Thu Jun 29 08:55:25 2017 -0700

Fix BFO import to use ROBOT. Fixes #233

commit e9f1b5e02e58afaef6cec4311e46e0115eb81985 Author: pbuttigieg Date: Thu Jun 29 17:16:20 2017 +0200

removing residual files

commit 054c71589a48cf36965c2860e81d5f51ddc33cb9 Author: pbuttigieg Date: Thu Jun 29 17:06:17 2017 +0200

addressing #490

commit 2a538fc7de7fdafc14ee54ffa62c822974b18f97 Author: pbuttigieg Date: Thu Jun 29 16:36:12 2017 +0200

obsoleted confusing class "dry river" and replaced with river channel

commit 1251625fa16580e06d29756d2e47ae2a5844a01a Author: Chris Mungall
Date: Wed Jun 28 16:48:43 2017 -0700

Removing files no longer used (compilation is direct from csv to owl now)

commit 4108c4e33621d955d643a894f3097b2cfcad0ddd Author: Chris Mungall
Date: Wed Jun 28 16:46:07 2017 -0700

regenerated, see #577

commit b10b2a88d1437146e3034f9bece61eaf0c02848a Author: Chris Mungall
Date: Wed Jun 28 16:42:41 2017 -0700

Overriding the label for PATO relational qualities since these
don't play with the design pattern lexical generation rules.

This isn't an ideal solution, as we are effectively maintaining
our own lexical variant of PATO. Currently regexes are being worked
into the DOSDP framework

See https://github.com/INCATools/dosdp-tools/issues/21

Once this is mature we can return to this

(Also the PATO naming is just weird... my fault)

commit 6ffcea78ce1380093257af565ec1e150818cb3ab Author: pbuttigieg Date: Wed Jun 28 11:11:25 2017 +0200

added CESAB subset files

commit 785cef7ed0b2e1bc4cbe9474460f9b606734a0c8 Author: pbuttigieg Date: Wed Jun 28 11:03:39 2017 +0200

created subset for cesab purposes

- Makefile
Published by pbuttigieg almost 9 years ago

envo - Technosphere, traps, and trucks -- oh my!

Release notes will be added in the next few days. Stay tuned!

- Makefile
Published by pbuttigieg almost 9 years ago

envo - Ecotone

This is a pre-release including a few terms and enhancements that were needed by our users. A full release with more informative notes will be posted soon.

Commit log

commit 05a3e3a8a4629dd15bc444c5332967e76e97f618 Author: pbuttigieg Date: Wed May 10 17:29:15 2017 +0200

a pre-release for some urgent requests

commit 6f82b09d5cd7126cd8207836a1a6ec95a6e94991 Author: pbuttigieg Date: Wed May 10 16:57:55 2017 +0200

refinements on polar classes and some hierarchy organisation

commit e96e556682fef54745a8f388080c20ee32400f38 Author: pbuttigieg Date: Wed May 10 16:44:43 2017 +0200

queued PCO:'microbial community' for import

commit 79fade1626edeb955d2bcf86a096ad266dfb18d4 Author: pbuttigieg Date: Thu May 4 16:21:53 2017 +0200

added obsolete prefix to deprecated term labels

commit ba3c7dcf3538a8ab56a221560763ad79ba035f9b Author: pbuttigieg Date: Thu May 4 15:47:00 2017 +0200

Fixing build: obsolete terms in axioms

commit 0e30ce4dcde0468b79c406f38761aa0210263c6d Author: pbuttigieg Date: Thu May 4 15:37:20 2017 +0200

addressing #507

commit 47dfa1ffc99d6c763c6f4aa2c2bc94566efce905 Author: pbuttigieg Date: Thu May 4 14:52:25 2017 +0200

fixed replaced_by reference for aerial habitat

commit a22bc5f88abf93aa34893165d40cf5c53529230d Author: pbuttigieg Date: Sat Apr 29 12:43:09 2017 +0200

addressing #504, fixed def for desublimation of vapour to ice

commit 876be99e1cd1af594d637c66e7f9f8593dfbf907 Author: pbuttigieg Date: Sat Apr 29 12:13:53 2017 +0200

addressing #504

commit 35b8dd86da5b0acc62072cb1ab014741ce16f218 Author: Kai Date: Thu Apr 27 18:03:21 2017 +0200

minor edits made to envo polar terms, typo corrections, added axiomatizations and added class errosion through nivation

commit e17a04a734fd6ce41c440d4b76495a3573014d7b Author: pbuttigieg Date: Wed Apr 26 21:21:06 2017 +0200

addressing #500

commit 91b103a60ff4cda8db33bab0f18521382af7f9c2 Author: pbuttigieg Date: Wed Apr 26 21:04:34 2017 +0200

Addresses #501

commit 00034228a713c11e7358b7c058299b69dcc91954 Author: pbuttigieg Date: Mon Apr 24 16:51:02 2017 +0200

adding new imports to release dirs

commit 7afcbbc560e90709772d42515e218f17ca3a4a3b Author: pbuttigieg Date: Mon Apr 24 16:42:36 2017 +0200

adding tsv for #494

commit be8a95dab2515ab5e1f446dd07bc6cbef91002f5 Author: pbuttigieg Date: Mon Apr 24 16:40:35 2017 +0200

adding CSV for classes in subset for issues such as #494

commit a38f57d14301e3c08f71ae198a39895bb89d68ac Author: pbuttigieg Date: Mon Apr 24 15:56:53 2017 +0200

updated all reports

commit d438f3f038e62e5238e9667fa44a9dde59e3576c Author: pbuttigieg Date: Sun Apr 23 23:34:39 2017 +0200

Addressing #502

commit d5fdb1d049367c730542cbfb210e53873982d838 Author: pbuttigieg Date: Sun Apr 23 23:15:21 2017 +0200

Addressing #491

commit f1d6c0c4517352be979f151765e8147c08d745d7 Author: pbuttigieg Date: Sat Apr 15 21:16:22 2017 +0200

new release: Polar express

commit cb7178e00f41b15b9038b0d8a55ae2118d497426 Author: pbuttigieg Date: Sat Apr 15 11:06:00 2017 +0200

closes #466, added IAO imports

commit 886dfbc7e062caafcb4637225752b1992d398b6b Merge: b445dd5 3dbcd1e Author: Pier Luigi Buttigieg Date: Fri Apr 14 11:03:51 2017 +0200

Merge pull request #487 from kaiiam/master

This merge adds a healthy dose of classes and relations for project cryophile - covering environments and their processes in polar systems

commit 3dbcd1e0e189162f2fe8be62021c8fa147ac6260 Merge: fe2966e b445dd5 Author: Kai Date: Thu Apr 13 11:28:07 2017 +0200

Merge remote-tracking branch 'upstream/master'

Merged IAO imports and makefile changes from Pier.

commit b445dd57954a1d55741ee813181ff25bb12a146d Author: pbuttigieg Date: Wed Apr 12 18:55:24 2017 +0200

added IAO import and edited Makefile accordingly

commit fe2966e834151540bf9270a023b6047baf616ccb Author: Kai Date: Tue Apr 11 17:23:52 2017 +0200

Added in_subset envoPolar for polar related classes, removed cirque basin as duplicate concept predating it cirque existed, and move the valley hierarchy under geographic depression. #487

commit 3e8f57bb30d6db8c4de4e7d4a468099096b33624 Author: Kai Date: Tue Apr 11 11:58:40 2017 +0200

Fixed bug in cryoconite hole axiomatization, changed causally downstream of some aeolian transport process to formed as result of some aeolian transport process.

commit dc8b426a52546b4fc9be70381be87d4733516880 Merge: 1d9e254 bbba184 Author: Kai Date: Tue Apr 11 11:32:47 2017 +0200

Merge remote-tracking branch 'upstream/master'

Imported causal relations from RO.

commit 1d9e25490eb8aa7eb91f17154389001b9bcdd2e0 Author: Kai Date: Tue Apr 11 11:31:35 2017 +0200

Began adding Pier’s orcid to the project cryophile classes created. Addressed the melt pond #489, and thaw hole hierarchies, creating the upper level class channel and moving tunnel under it. Also made issue requesting for a class such as PATO:microbial community #499.

commit bbba1845e1fdde1486b03bc11f29def6c2ca3a87 Merge: 5359e45 73dccf6 Author: pbuttigieg Date: Mon Apr 10 20:58:20 2017 +0200

Merge branch 'master' of https://github.com/EnvironmentOntology/envo
syncing web-edited files with local push on imports

commit 5359e45770941b41d65fc6e1e1d4e97ba856b7c5 Author: pbuttigieg Date: Mon Apr 10 20:57:59 2017 +0200

added causal relations to RO import

commit 1cdcf0fa99aaed10dfb9bca034cd913843966a7b Author: Kai Date: Mon Apr 10 12:28:11 2017 +0200

Added final classes for project cryophile pull request 3 snowpack, perennial snow patch, move the precipitation process hierarchy to be subclass of material transport process, see https://github.com/EnvironmentOntology/envo/pull/487#issuecomment-292571243

commit d81e45445e12742d6e245c75bfa86ef792013e9b Author: Kai Date: Sun Apr 9 01:21:30 2017 +0200

Added and modified more polar related terms, season generating process associated terms as well as snow melt and snow drift associated terms see latter half of https://github.com/EnvironmentOntology/envo/pull/487#issuecomment-292571243 starting with season generating process and ending with snow patch.

commit c85ef18e5a2160d4748cd1d7eb7a4abb7d5b03a7 Author: Kai Date: Fri Apr 7 19:20:53 2017 +0200

Modified and added classes polar and gas emission processes see https://github.com/EnvironmentOntology/envo/pull/487#issuecomment-292526931

commit fcbd366cd52e212a3fe95739e3769da585bb1f75 Merge: cf41b5a 73dccf6 Author: Kai Date: Fri Apr 7 10:42:17 2017 +0200

Merge remote-tracking branch 'upstream/master'

commit cf41b5a0d1c6de78207d3b1721b557cdc975f6fe Author: Kai Date: Fri Apr 7 10:40:41 2017 +0200

Added ice formation process and ice type related classes see https://github.com/EnvironmentOntology/envo/pull/487#discussion_r110089957

commit 73dccf6dba1d8e48291f5e192359dd6e0ac25b58 Author: Pier Luigi Buttigieg Date: Thu Apr 6 18:17:01 2017 +0200

Resort and give ranges to new patterns in #492

commit 31ca0c713ec8f2dc2df70ce563a2141e5c4eb08d Author: pbuttigieg Date: Thu Apr 6 18:01:43 2017 +0200

added oxidant for #487

commit 9cdfcb158d1fb30fd5b22a9e69d365482819404c Merge: 43557c3 9fa5ec8 Author: Kai Date: Thu Apr 6 14:48:40 2017 +0200

Merge remote-tracking branch 'upstream/master'

importing pato terms from upstream

commit 9fa5ec862da9bc672ba62faa418a060d8357fa50 Author: pbuttigieg Date: Thu Apr 6 14:45:24 2017 +0200

imported PATO classes for #486 #487 #488

commit 43557c3a736eda95f7d8481e4689adb39bbfc091 Author: Kai Date: Thu Apr 6 10:43:37 2017 +0200

Added ice formation and ice flow related classes see https://github.com/EnvironmentOntology/envo/pull/487#discussion_r110089957

commit 47b20923876a11779c42d32f64f8f74135f5a379 Author: Kai Date: Thu Apr 6 08:45:18 2017 +0200

Added and updated meltpond related classes see https://github.com/EnvironmentOntology/envo/pull/487#discussion_r109682927 discussion which was somehow clipped of from #487

commit e3e88c1d9c8b3833f697fa28882fcfcd91bb0429 Author: Kai Date: Thu Apr 6 08:13:04 2017 +0200

minor edits for #487

commit b0c253e40b37a5c203a8505b7663b01ab638ddc1 Author: Kai Date: Wed Apr 5 13:28:47 2017 +0200

modified sediment and arctic related classes as doccumented in #483 and #487

commit f144d1c1393ae3c8cdb2983a0a994bd02371ed06 Author: Kai Date: Fri Mar 31 19:29:51 2017 +0200

added more arctic classes see discussion in #483

commit b94e86b413f6e11d662356102d433aa8f15fb8a5 Merge: b280935 43150a7 Author: Pier Luigi Buttigieg Date: Thu Mar 30 18:33:42 2017 +0200

Merge pull request #481 from kaiiam/master

This PR has been reviewed and is ready for merging. There will still be edits that will follow, but in a new PR from @kaiiam.

commit 43150a7cd193fabc464e3ec86b5053946acf5c73 Author: Kai Date: Thu Mar 30 18:14:08 2017 +0200

final edits for #481

commit 17f65c62aad086330feeb5305a1802f1bdf5e78e Author: Kai Date: Thu Mar 30 18:01:54 2017 +0200

added additional axioms to #481

commit 8374d49ac47d3910e193b7be75fb3dc45f255516 Author: Kai Date: Thu Mar 30 17:09:22 2017 +0200

fixed axioms breaking build in  #481

commit 855136b02cbb21c8f61a7a7233d7433ac6e47109 Author: Kai Date: Thu Mar 30 16:36:05 2017 +0200

added axioms for classes added in #481 and added powdery snow

commit cf835a3d6ed1444a8e9e55132bbfd83f986ac28e Author: Kai Date: Thu Mar 30 13:07:36 2017 +0200

fixed issues related to build failure for #481

commit 749ce2a4db8314f1af87dcf553fd89825148d5a5 Author: Kai Date: Wed Mar 29 18:22:55 2017 +0200

fixed issues for project cryophile 2nd pull request #481

commit b280935eab396e12a795c1c0b6072625080787e5 Author: Pier Luigi Buttigieg Date: Wed Mar 29 17:54:13 2017 +0200

Fixed subset wiki link

commit 55c5fff62194f303c5d923f09019d1ce98dcc56e Author: Kai Date: Tue Mar 28 20:15:19 2017 +0200

addressing #475 added: aeolian transport process, & soot

commit 14099a98718f847517065635df84affdbb94baf1 Author: Kai Date: Tue Mar 28 19:07:06 2017 +0200

addressing #474 & #475 added: blue ice, compaction process, material accumulation process, material transport process, ice gain, glacial transport process, updated alpine glacier, added: cirque glaciers, cirque basin, glacial erosion process, geographic basin, glacial ice loss, material decumulation process, glacial ice loss, and englacial stream.

commit 299650d5ff6521a67d4a646548997ebe5d5fea0e Author: Kai Date: Tue Mar 28 15:26:41 2017 +0200

revamped definition for glacier, added glacial ice as subclass of ice mass, erosionally enriched glacial ice, & glacial erosion process.

commit 135a712c1c793c860507e06c36aab52624645169 Author: Kai Date: Tue Mar 28 12:46:25 2017 +0200

added niviation

commit b8b6c594bcc96f01361c63191ae83c7f97b51d79 Author: Kai Date: Tue Mar 28 11:45:42 2017 +0200

updated definitions for neve and firn

- Makefile
Published by pbuttigieg about 9 years ago

envo - Polar express

About this release

This release features a large collection of classes representing polar and cryosphere-related environments and environmental processes, primarily prepared by @kaiiam. These semantics are in aid of efforts such as the Alfred Wegener Institute's Frontiers in Arctic Marine Monitoring programme. Knowledge was harvested from numerous resources - such as the review by Boetius et al. (2015, Nat Rev Microbiol 13: 677–690) - which are cross referenced in each class. Efforts to align with existing resources have been initiated, e.g.: https://github.com/ESIPFed/sweet/issues/7

Past and ongoing work related to this project is organised in project cryophile. This work has also motivated the general development of the environmental process hierarchy.

A number of other requests, such as that for fissures (see #466) are also bundled in this release.

As usual, the hyperlinks to the terms will be live once OntoBee runs its import cycle over the weekend; however, the PURLs are valid immediately.

To better axiomatise the new classes and enhance existing ones, we have also imported numerous classes from other OBO projects, detailed below.

New Terms

aeolian transport of snow aeolian transport process atmosphere and water column exposed melt pond atmosphere-exposed melt pond blue ice brine channel formation process brine channel brine rejection from seawater calving of ice from an iceberg channel cirque glacier cold season compaction process continental subsurface zone cryoconite hole cryoconite cryoform depositional process englacial stream erosionally enriched glacial ice erosionally enriched ice explosion process first year ice formation process first year ice fissure water frazil ice formation frazil ice gas emission process geographic basin glacial erosion process glacial ice calving process glacial ice gain glacial ice loss glacial ice glacial sintering glacial transport process grease ice layer hydrocarbon gas emission process ice ablation zone ice floe ice formation process ice gain iceberg calving process ice-encased melt pond intraglacial lake marine sediment material accumulation process material decumulation process material transformation process material transport process melt pond methane gas emission process methane-laden permafrost methane-releasing thermokarst lake methane-sourced permafrost crater multiyear ice formation process multiyear ice new ice formation process new ice nilas formation process nilas nivation pancake ice perennial snow patch permafrost methane explosion permafrost thawing process planetary subsurface zone powdery snow avalanche powdery snow sea ice floe sea ice formation process sea ice formation process season generating process season seasonal melting process seasonal snow patch second year ice formation second year ice sedimentation in a water body shallow marine sediment shuga formation process shuga slab avalanche slab snow slush formation process slush ice layer slush ice snow drift formation snow drift snow mass snow patch snowpack solid-phase sintering soot subglacial lake supraglacial lake thaw hole thermokarst depression thermokarst lake thermokarst warm season water column exposed melt pond wet snow avalanche young ice formation process young ice

New imported classes

PURL | label ----|---- http://purl.obolibrary.org/obo/IAO0000104 | plan specification http://purl.obolibrary.org/obo/IAO0000109 | measurement datum http://purl.obolibrary.org/obo/IAO0000100 | data set http://purl.obolibrary.org/obo/IAO0000584 | time sampled measurement data set http://purl.obolibrary.org/obo/IAO0000582 | time stamped measurement datum http://purl.obolibrary.org/obo/IAO0000032 | scalar measurement datum http://purl.obolibrary.org/obo/IAO0000136 | is about http://purl.obolibrary.org/obo/IAO0000221 | is quality measurement of http://purl.obolibrary.org/obo/RO0002404 | causally downstream of http://purl.obolibrary.org/obo/RO0002411 | causally upstream of http://purl.obolibrary.org/obo/CHEBI63248| oxidant http://purl.obolibrary.org/obo/PATO0000318| blue http://purl.obolibrary.org/obo/PATO0001855| horizontal http://purl.obolibrary.org/obo/PATO0000411| circular http://purl.obolibrary.org/obo/PATO0000964| transparent http://purl.obolibrary.org/obo/PATO0001354| translucent http://purl.obolibrary.org/obo/PATO0000963| opaque http://purl.obolibrary.org/obo/PATO0001171| elastic http://purl.obolibrary.org/obo/PATO0001172| inelastic http://purl.obolibrary.org/obo/PATO0000689| continuous (of a process) http://purl.obolibrary.org/obo/PATO0005011| continuous (of a material entity) http://purl.obolibrary.org/obo/PATO0001688| increased elevation http://purl.obolibrary.org/obo/PATO0001689| decreased elevation http://purl.obolibrary.org/obo/PATO0000591| increased thickness http://purl.obolibrary.org/obo/PATO0000592| decreased thickness http://purl.obolibrary.org/obo/PATO0001781| irregular thickness

Commit log

commit cb7178e00f41b15b9038b0d8a55ae2118d497426 Author: pbuttigieg Date: Sat Apr 15 11:06:00 2017 +0200

closes #466, added IAO imports

commit 886dfbc7e062caafcb4637225752b1992d398b6b Merge: b445dd5 3dbcd1e Author: Pier Luigi Buttigieg Date: Fri Apr 14 11:03:51 2017 +0200

Merge pull request #487 from kaiiam/master

This merge adds a healthy dose of classes and relations for project cryophile - covering environments and their processes in polar systems

commit 3dbcd1e0e189162f2fe8be62021c8fa147ac6260 Merge: fe2966e b445dd5 Author: Kai Date: Thu Apr 13 11:28:07 2017 +0200

Merge remote-tracking branch 'upstream/master'

Merged IAO imports and makefile changes from Pier.

commit b445dd57954a1d55741ee813181ff25bb12a146d Author: pbuttigieg Date: Wed Apr 12 18:55:24 2017 +0200

added IAO import and edited Makefile accordingly

commit fe2966e834151540bf9270a023b6047baf616ccb Author: Kai Date: Tue Apr 11 17:23:52 2017 +0200

Added in_subset envoPolar for polar related classes, removed cirque basin as duplicate concept predating it cirque existed, and move the valley hierarchy under geographic depression. #487

commit 3e8f57bb30d6db8c4de4e7d4a468099096b33624 Author: Kai Date: Tue Apr 11 11:58:40 2017 +0200

Fixed bug in cryoconite hole axiomatization, changed causally downstream of some aeolian transport process to formed as result of some aeolian transport process.

commit dc8b426a52546b4fc9be70381be87d4733516880 Merge: 1d9e254 bbba184 Author: Kai Date: Tue Apr 11 11:32:47 2017 +0200

Merge remote-tracking branch 'upstream/master'

Imported causal relations from RO.

commit 1d9e25490eb8aa7eb91f17154389001b9bcdd2e0 Author: Kai Date: Tue Apr 11 11:31:35 2017 +0200

Began adding Pier’s orcid to the project cryophile classes created. Addressed the melt pond #489, and thaw hole hierarchies, creating the upper level class channel and moving tunnel under it. Also made issue requesting for a class such as PATO:microbial community #499.

commit bbba1845e1fdde1486b03bc11f29def6c2ca3a87 Merge: 5359e45 73dccf6 Author: pbuttigieg Date: Mon Apr 10 20:58:20 2017 +0200

Merge branch 'master' of https://github.com/EnvironmentOntology/envo
syncing web-edited files with local push on imports

commit 5359e45770941b41d65fc6e1e1d4e97ba856b7c5 Author: pbuttigieg Date: Mon Apr 10 20:57:59 2017 +0200

added causal relations to RO import

commit 1cdcf0fa99aaed10dfb9bca034cd913843966a7b Author: Kai Date: Mon Apr 10 12:28:11 2017 +0200

Added final classes for project cryophile pull request 3 snowpack, perennial snow patch, move the precipitation process hierarchy to be subclass of material transport process, see https://github.com/EnvironmentOntology/envo/pull/487#issuecomment-292571243

commit d81e45445e12742d6e245c75bfa86ef792013e9b Author: Kai Date: Sun Apr 9 01:21:30 2017 +0200

Added and modified more polar related terms, season generating process associated terms as well as snow melt and snow drift associated terms see latter half of https://github.com/EnvironmentOntology/envo/pull/487#issuecomment-292571243 starting with season generating process and ending with snow patch.

commit c85ef18e5a2160d4748cd1d7eb7a4abb7d5b03a7 Author: Kai Date: Fri Apr 7 19:20:53 2017 +0200

Modified and added classes polar and gas emission processes see https://github.com/EnvironmentOntology/envo/pull/487#issuecomment-292526931

commit fcbd366cd52e212a3fe95739e3769da585bb1f75 Merge: cf41b5a 73dccf6 Author: Kai Date: Fri Apr 7 10:42:17 2017 +0200

Merge remote-tracking branch 'upstream/master'

commit cf41b5a0d1c6de78207d3b1721b557cdc975f6fe Author: Kai Date: Fri Apr 7 10:40:41 2017 +0200

Added ice formation process and ice type related classes see https://github.com/EnvironmentOntology/envo/pull/487#discussion_r110089957

commit 73dccf6dba1d8e48291f5e192359dd6e0ac25b58 Author: Pier Luigi Buttigieg Date: Thu Apr 6 18:17:01 2017 +0200

Resort and give ranges to new patterns in #492

commit 31ca0c713ec8f2dc2df70ce563a2141e5c4eb08d Author: pbuttigieg Date: Thu Apr 6 18:01:43 2017 +0200

added oxidant for #487

commit 9cdfcb158d1fb30fd5b22a9e69d365482819404c Merge: 43557c3 9fa5ec8 Author: Kai Date: Thu Apr 6 14:48:40 2017 +0200

Merge remote-tracking branch 'upstream/master'

importing pato terms from upstream

commit 9fa5ec862da9bc672ba62faa418a060d8357fa50 Author: pbuttigieg Date: Thu Apr 6 14:45:24 2017 +0200

imported PATO classes for #486 #487 #488

commit 43557c3a736eda95f7d8481e4689adb39bbfc091 Author: Kai Date: Thu Apr 6 10:43:37 2017 +0200

Added ice formation and ice flow related classes see https://github.com/EnvironmentOntology/envo/pull/487#discussion_r110089957

commit 47b20923876a11779c42d32f64f8f74135f5a379 Author: Kai Date: Thu Apr 6 08:45:18 2017 +0200

Added and updated meltpond related classes see https://github.com/EnvironmentOntology/envo/pull/487#discussion_r109682927 discussion which was somehow clipped of from #487

commit e3e88c1d9c8b3833f697fa28882fcfcd91bb0429 Author: Kai Date: Thu Apr 6 08:13:04 2017 +0200

minor edits for #487

commit b0c253e40b37a5c203a8505b7663b01ab638ddc1 Author: Kai Date: Wed Apr 5 13:28:47 2017 +0200

modified sediment and arctic related classes as doccumented in #483 and #487

commit f144d1c1393ae3c8cdb2983a0a994bd02371ed06 Author: Kai Date: Fri Mar 31 19:29:51 2017 +0200

added more arctic classes see discussion in #483

commit b94e86b413f6e11d662356102d433aa8f15fb8a5 Merge: b280935 43150a7 Author: Pier Luigi Buttigieg Date: Thu Mar 30 18:33:42 2017 +0200

Merge pull request #481 from kaiiam/master

This PR has been reviewed and is ready for merging. There will still be edits that will follow, but in a new PR from @kaiiam.

commit 43150a7cd193fabc464e3ec86b5053946acf5c73 Author: Kai Date: Thu Mar 30 18:14:08 2017 +0200

final edits for #481

commit 17f65c62aad086330feeb5305a1802f1bdf5e78e Author: Kai Date: Thu Mar 30 18:01:54 2017 +0200

added additional axioms to #481

commit 8374d49ac47d3910e193b7be75fb3dc45f255516 Author: Kai Date: Thu Mar 30 17:09:22 2017 +0200

fixed axioms breaking build in  #481

commit 855136b02cbb21c8f61a7a7233d7433ac6e47109 Author: Kai Date: Thu Mar 30 16:36:05 2017 +0200

added axioms for classes added in #481 and added powdery snow

commit cf835a3d6ed1444a8e9e55132bbfd83f986ac28e Author: Kai Date: Thu Mar 30 13:07:36 2017 +0200

fixed issues related to build failure for #481

commit 749ce2a4db8314f1af87dcf553fd89825148d5a5 Author: Kai Date: Wed Mar 29 18:22:55 2017 +0200

fixed issues for project cryophile 2nd pull request #481

commit b280935eab396e12a795c1c0b6072625080787e5 Author: Pier Luigi Buttigieg Date: Wed Mar 29 17:54:13 2017 +0200

Fixed subset wiki link

commit 55c5fff62194f303c5d923f09019d1ce98dcc56e Author: Kai Date: Tue Mar 28 20:15:19 2017 +0200

addressing #475 added: aeolian transport process, & soot

commit 14099a98718f847517065635df84affdbb94baf1 Author: Kai Date: Tue Mar 28 19:07:06 2017 +0200

addressing #474 & #475 added: blue ice, compaction process, material accumulation process, material transport process, ice gain, glacial transport process, updated alpine glacier, added: cirque glaciers, cirque basin, glacial erosion process, geographic basin, glacial ice loss, material decumulation process, glacial ice loss, and englacial stream.

commit 299650d5ff6521a67d4a646548997ebe5d5fea0e Author: Kai Date: Tue Mar 28 15:26:41 2017 +0200

revamped definition for glacier, added glacial ice as subclass of ice mass, erosionally enriched glacial ice, & glacial erosion process.

commit 135a712c1c793c860507e06c36aab52624645169 Author: Kai Date: Tue Mar 28 12:46:25 2017 +0200

added niviation

commit b8b6c594bcc96f01361c63191ae83c7f97b51d79 Author: Kai Date: Tue Mar 28 11:45:42 2017 +0200

updated definitions for neve and firn

- Makefile
Published by pbuttigieg about 9 years ago

envo - Hot tub time machine

Hot tub time machine

Eponyms for this release: hot tub time crystal

In this release, we add several terms to address user requests for epidemiology, food science, Arctic research, and anthropogenic disasters. As usual, the hyperlinks to the terms will be live once OntoBee runs its import cycle over the weekend; however, the PURLs are valid immediately.

Further, terms have been edited, added, and imported in preparation for more anatomical environments, pest disasters, microbial biological processes, and food-linked environmental semantics.

New Terms

abattoir ablation zone animal cage campground closed animal house day care building dedicated campground ecological corridor firn fish processing building hot tub ice ablation process ice calving process ice loss process impromptu campground knackery migration path mushroom environment névé nursing home open animal house petting zoo plumbing drain residential building restaurant rubbish landslide time crystal water ice sublimation process

Commit log

commit 2dc8f3b12ff4e6d4e1e3b58c5dcc477bc6b3aa1b Author: pbuttigieg Date: Mon Mar 27 18:58:09 2017 +0200

addressing #460 and added time crystal

commit 717bcd6b26792bdde4bce29224ad5e704d747b7f Author: pbuttigieg Date: Mon Mar 27 15:42:52 2017 +0200

addressing #470

commit 6f524865e5b0b69ba0b8e5989931a7570372e23f Author: pbuttigieg Date: Mon Mar 27 13:48:25 2017 +0200

linked methanogenesis to relevant bioreactor

commit 47b378d8f944b04f68640080d8bad41fbfc67507 Author: pbuttigieg Date: Mon Mar 27 13:43:20 2017 +0200

added GO processes for microbial metabolism

commit 4ae859dd7a1f3064779faa1eba28c1c4703d20cc Author: pbuttigieg Date: Fri Mar 24 14:48:18 2017 +0100

set up import for foodon terms (xref #464) and updated Makefile

commit 433b7d346eb5b9bfb6aa316353f54a8c2f7e8cf1 Author: Pier Luigi Buttigieg Date: Thu Mar 23 23:10:35 2017 +0100

Update README.md

commit cee22bb438888e9514a791435a6fa71f2bf0d9ec Author: pbuttigieg Date: Thu Mar 23 22:59:03 2017 +0100

adding terms requested in #460

commit 0b9b64a47c93b0ab6aa2983c9029c15399b8e87c Author: pbuttigieg Date: Thu Mar 23 22:24:45 2017 +0100

adding terms requested in #460

commit b5d2eb872247f61c9cadd608865ec6306fca274f Author: Pier Luigi Buttigieg Date: Thu Mar 23 16:27:07 2017 +0100

fixed headers

commit dfdf4e49200470f9a1ce7f3e6f325e58175ac832 Merge: 2297c08 8c9a9db Author: Pier Luigi Buttigieg Date: Sat Mar 18 15:01:54 2017 +0100

Merge pull request #469 from kaiiam/master

First independent pull request

commit 8c9a9dbcec94dd13a8fd3a16d1619dc26966fc16 Author: Kai Date: Thu Mar 16 16:22:27 2017 +0100

fixed neve and firn

commit 70faf2a7e847dde03ee3293208b0f2ecbfc65fa5 Merge: 6375e22 b7a1d6b Author: Kai Date: Thu Mar 16 14:10:17 2017 +0100

Merge branch 'master' of https://github.com/kaiiam/envo

commit 6375e2248836f3ab621e601d3b4cce023bccc16a Author: Kai Date: Thu Mar 16 14:06:18 2017 +0100

added neve and firn

commit 2297c08048a7aaa51ff427adf3475182c1dc9891 Merge: b06b420 b7a1d6b Author: Pier Luigi Buttigieg Date: Wed Mar 15 19:27:28 2017 +0100

Merge pull request #468 from kaiiam/master

Added ID space

commit b7a1d6bfb6395136e12d31bcdc143f88fa476802 Author: Pier Luigi Buttigieg Date: Wed Mar 15 19:24:04 2017 +0100

Fixed idrange value

@kaiiam - your idrange conflicted with an existing editor

commit 0a1154e1b8f8af276becaceb4a23351edc66e6fe Author: kaiiam Date: Wed Mar 15 19:16:25 2017 +0100

fixed typo

commit 128008d9d59b8b61e3ef98bf43a96c3dc3ced9c5 Author: Kai Date: Wed Mar 15 19:12:39 2017 +0100

added ID space for Kai Blumberg

commit b06b420aeb07f576053f83bd7e46199980cca361 Author: pbuttigieg Date: Mon Mar 13 19:31:25 2017 +0100

Removed anaerobic axiom from marine anoxic zone, adding arctic classes, garbage landslide

commit 19d46cee98dc84e61bc0c0fb4602edb1fff9d551 Author: pbuttigieg Date: Mon Mar 13 16:09:37 2017 +0100

added some water defs, prepping for axioms

commit fc72a4373a34b49f21778043c5cd7acf2a90ce57 Author: pbuttigieg Date: Mon Mar 13 15:27:22 2017 +0100

added text def for skin environment

commit b0ef7754607977ca867b3e7b189dbc422dbab825 Merge: 55b6f8b fff1128 Author: pbuttigieg Date: Mon Mar 13 12:29:56 2017 +0100

Merge branch 'master' of https://github.com/EnvironmentOntology/envo

commit 55b6f8b008cbf179927b350f28316cf8dd1452d7 Author: pbuttigieg Date: Mon Mar 13 12:25:33 2017 +0100

cleaned up makefile and go_terms.txt, switched NCBI import to ROBOT, added locusts and corals

commit fff11288d663c377148c28dcbdb7aba67ae405b8 Author: pbuttigieg Date: Mon Mar 13 12:25:33 2017 +0100

cleaned up makefile and go_terms.txt, switched NCBI import to ROBOT

- Makefile
Published by pbuttigieg about 9 years ago

envo - 2017-03-13

NOTE: PURLs to the new classes will be resolvable through OntoBee when it performs its import cycle on Saturday. Until then, please see the released ontology files to view the new classes: https://github.com/EnvironmentOntology/envo#stable-release-versions

New terms

aquaculture process automated teller machine biocrust cloud condensation nucleus feasting pit site geothermally heated river nucleation of cloud condensation shrimp pond soil biocrust

New terms via design patterns

New term ID | Quality ID | Quality label | Env. material ID | Env. material label --|--|--|--|-- ENVO:09200012 | PATO:0000146 | temperature | ENVO:00001998 | soil ENVO:09200013 | PATO:0001822 | wetness | ENVO:00001998 | soil

Commit log

commit 1dbd26c1bd62ffbd4d67f82e1733fe7419f42843 Author: pbuttigieg Date: Mon Mar 13 06:48:55 2017 +0100

Closes #450

commit cd7953b924d8db661aea693491a5a1484d99417e Author: pbuttigieg Date: Mon Mar 13 06:21:34 2017 +0100

Refined lava def and axioms

commit 44767181797cb1c58bfe7cc934306c2b37ba4eb7 Author: pbuttigieg Date: Mon Mar 13 06:16:28 2017 +0100

Closes #444

commit 06a4adaceb28e0b1e6d965dffb0526e7743f07f3 Author: pbuttigieg Date: Mon Mar 13 06:05:39 2017 +0100

Addressing #438

commit d59882e30c7ea91d001a820d66f5598cbea1342d Author: pbuttigieg Date: Mon Mar 13 04:22:48 2017 +0100

Closes #446

commit f7e6c41af173ad9b06570a15c5cb53c51e70755f Author: pbuttigieg Date: Mon Mar 13 04:04:33 2017 +0100

Closes #448

commit 1cc3f57d45866be32aa22e3f915d1b9144ef89ac Author: pbuttigieg Date: Mon Mar 13 03:20:46 2017 +0100

Closes #462

commit 3d7c7f04714da740b9e114b6090ad7033533f724 Author: pbuttigieg Date: Mon Mar 13 03:15:13 2017 +0100

Closes #461

commit 5c25e48cb690fac9dbc67221502618c989a49233 Author: pbuttigieg Date: Mon Mar 13 03:12:44 2017 +0100

updating for entity-attribute patterns and addressing #461

commit 4dacdff1d9f964fef6a3b0bc9bf4549c9a48c0ea Author: pbuttigieg Date: Mon Mar 13 03:05:22 2017 +0100

Added aquaculture process for #467

commit 264f97a24ba5e39852558cc5b5020e007dd86e2e Author: pbuttigieg Date: Mon Mar 13 02:50:33 2017 +0100

Updated storm definition to reflect increased rates

commit b8005a79cb6f4314aad91b5ecaa5e4f164fd77f4 Author: pbuttigieg Date: Mon Mar 13 02:37:53 2017 +0100

Closed #467

commit b790b4834454b8bdcd462ea7d976bbd2e4cdee8e Author: pbuttigieg Date: Mon Feb 27 19:31:20 2017 +0100

refined lightning semantics and minor edits

commit cb1c376d3cacdd48eda47aea82be66be6579a29b Author: pbuttigieg Date: Mon Feb 27 18:48:12 2017 +0100

added comment stating algal bloom process isn't ready for use

commit 4b5037dcf4495abb10711bd3e1c0506932f1a4c0 Author: pbuttigieg Date: Mon Feb 27 18:36:22 2017 +0100

fixed def error for area of dwarf scrub, cf #458

commit 9940b9b68a59c7a571e30529e8596b714b01e0f6 Author: Pier Luigi Buttigieg Date: Sun Feb 26 18:31:27 2017 +0100

Update README.md

- Makefile
Published by pbuttigieg over 9 years ago

envo - 2017-02-26 release

Release notes

Main issues addressed:

465 housekeeping

458 NLCD classification, new subset

442 Extension of storm semantics and environmental hazard subset

New axioms, improved defintions and some clean-up of existing axioms performed.

Subsets released

• ncld2011 subset
• environmental_hazards (update)
• wwfBiome

For details see this wiki page

New classes in this release

The NLCD subset

• area of barren land
• area of cropland
• area of deciduous forest
• area of developed open space
• area of developed space with high usage intensity
• area of developed space with low usage intensity
• area of developed space with medium usage intensity
• area of dwarf scrub
• area of emergent herbaceous wetland
• area of evergreen forest
• area of gramanoid or herbaceous vegetation
• area of lichen-dominated vegetation
• area of mixed forest
• area of moss-dominated vegetation
• area of open water
• area of pastureland or hayfields
• area of perennial ice or snow
• area of perennial snow
• area of perennial water ice
• area of scrub
• area of sedge- and forb-dominated herbaceious vegetation
• area of woody wetland

NLCD-related terms for axioms

• atmospheric column
• bedrock
• continental crust
• desert pavement
• oceanic crust

Storm semantics

• atmospheric storm
• hailfall
• hailstorm
• icestorm
• Mohorovičić discontinuity
• precipitation process
• rainstorm
• regolith
• snowstorm
• storm
• thunderstorm

- Makefile
Published by pbuttigieg over 9 years ago

envo - 2017-01-07 release

This release contains an important bug fix, see #455 for details.

New terms in this release:

+[Term] +id: ENVO:01000870 +name: ground deformation process +def: "A process in which a solid planetary surface is deformed." [] +comment: This is a class to be filled by inference. +is_a: ENVO:02500000 ! environmental system process +relationship: has_input ENVO:01000635 ! land + +[Term] +id: ENVO:01000871 +name: puddle of water +def: "A puddle is a small accumulation of water, on a surface. It can form either by pooling in a depression on the surface, or by surface tension upon a fla +comment: This class refers only to puddles of water, see https://github.com/EnvironmentOntology/envo/issues/337 +is_a: ENVO:00000549 ! intermittent water body + +[Term] +id: ENVO:01000872 +name: balast water +def: "Ballast water is water contained in the ballast tanks of sea-going vessels." [http://www.nature.com/news/four-routes-to-better-maritime-governance-1.21 +is_a: ENVO:00002006 ! water + +[Term] +id: ENVO:01000873 +name: ballast tank +def: "A ballast tank is a compartment within a boat, ship or other floating structure that holds water, which is used as ballast to provide stability for a v +comment: Consider using http://purl.obolibrary.org/obo/OBI_0000967 as a super-class +is_a: ENVO:00003074 ! manufactured product

- Makefile
Published by cmungall over 9 years ago

envo - 2016-11-20 release

New classes: - coal dust - ore - uranium mine - iron mine - coal - platinum ore - gold ore - iron ore - uranium ore - oil shale - paraffin wax - welding fume - fume - copper ore - open-pit mine - natural wax - aluminum welding fume - vanadium fume - paraffin wax fume - zinc chloride fume - lead paint - paint - peat drainage - peat extraction - transportation - dust from plant parts - cotton dust - grain dust - fibrous glass dust - fibrous dust - mineral dust - asbestos dust - clay dust - cement dust - metallic dust - smog - pyrolysis - fog - thermolysis - flower-rich field margin strip - water ice crystal - crystal - flower strip - hair ice - combustion process - smoke - mouth of liquid discharge conduit - overflow structure - temperate marine upwelling biome - turbulent aquatic surface layer - marl - coral bleaching process - tropical marine coral reef biome - methane clathrate - clathrate material - temperate mediterranean sea biome - temperate marginal sea biome - tropical marine upwelling biome - marine upwelling biome - environmental system process quality - atmospheric wind intensity - porosity of soil - mass density of soil - concentration of of ammonium in soil - concentration of of nitrate in soil - composition of soil - structure of soil - acidity of soil - ionosphere - boundary layer - glaze ice layer - exosphere - atmospheric layer - ozone layer - mass of biological material - eutrophic lake

- Makefile
Published by cmungall over 9 years ago

envo - 2016-05-17

In this release, multiple user requests for terms in our process, feature, and environmental system hierarchies have been addressed. Notably, astronomical objects and bodies have been added to help clarify planetary scale processes. This is likely to impact EnvO's hierarchies quite strongly in the near future, offering realist alternatives to problematic classes such as "geographic feature".

- Makefile
Published by pbuttigieg about 10 years ago

envo - 2016-02-18

In this release, several classes supporting the SDGIO have been added as well as a number of classes responding to user requests. Some routine curation has also been performed.

- Makefile
Published by pbuttigieg over 10 years ago

envo - 2016-02-05.0.1

Patch for previous release, fixing incorrect axiomatisation of "important site"

- Makefile
Published by pbuttigieg over 10 years ago

envo - 2016-02-03

In this release, new terms have been added to support the SDGIO as well as a number of other user requests. This release also fixes the errors opening envo.obo in OBO-Edit 2, as long as "Allow dangling axioms" is enabled in the advanced view of the "Load Ontologies" dialogue.

- Makefile
Published by pbuttigieg over 10 years ago

envo - 2016-01-22 release

In this release, new terms have been added to support the SDGIO as well as nascent projects such as the Food Ontology. More attention is being focused on polar ecosystems to support projects such as the FRontiers in Arctic marine Monitoring (FRAM) initiative.

- Makefile
Published by pbuttigieg over 10 years ago

envo - 2015-12-18 release

- Makefile
Published by pbuttigieg over 10 years ago

envo - 2015-09-24 release

- Makefile
Published by cmungall over 10 years ago

envo - 2015-08-31 release

- Makefile
Published by cmungall almost 11 years ago