basin3d
The core BASIN-3D application that uses a generalized data synthesis model that applies across a variety of earth science observation types (hydrology, geochemistry, climate etc.). https://basin3d.readthedocs.io/
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
5 of 8 committers (62.5%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.4%) to scientific vocabulary
Repository
The core BASIN-3D application that uses a generalized data synthesis model that applies across a variety of earth science observation types (hydrology, geochemistry, climate etc.). https://basin3d.readthedocs.io/
Basic Info
Statistics
- Stars: 14
- Watchers: 4
- Forks: 4
- Open Issues: 49
- Releases: 19
Metadata Files
README.md
basin3d
Broker for Assimilation, Synthesis and Integration of eNvironmental Diverse, Distributed Datasets.
BASIN-3D is a software ecosystem that synthesizes diverse earth science data from a variety of remote data sources on-demand, without the need for storing data in a single database. It is designed to parse, translate, and synthesize diverse observations from well-curated repositories into standardized formats for scientific uses such as analysis and visualization.
basin3d is the core BASIN-3D application that uses a generalized data synthesis model that applies across a variety of earth science observation types (hydrology, geochemistry, climate etc.).
basin3d has available plugins that can connect to specific data sources of interest, and map the data source vocabularies to the basin3d synthesis models.
Getting Started
Install
Install a source distribution with pip:
$ pip install basin3d
Make sure your installation was successful:
$ python
>>> import basin3d
>>>
Documentation
See latest basin3d documentation here
Contributing
If you’re interested in contributing to basin3d, check out out our contributing guidelines. It will help explain why, what, and how to get started.
Changelog
See the changelog for a history of updates and changes to basin3d
Authors
- Charuleka Varadharajan - LBL
- Valerie Hendrix - LBL
- Danielle Svehla Christianson - LBL
- Catherine Wong - LBL
Copyright
Broker for Assimilation, Synthesis and Integration of eNvironmental Diverse, Distributed Datasets (BASIN-3D) Copyright (c) 2019, The Regents of the University of California, through Lawrence Berkeley National Laboratory (subject to receipt of any required approvals from the U.S. Dept. of Energy). All rights reserved.
If you have questions about your rights to use or distribute this software, please contact Berkeley Lab's Intellectual Property Office at IPO@lbl.gov.
NOTICE. This Software was developed under funding from the U.S. Department of Energy and the U.S. Government consequently retains certain rights. As such, the U.S. Government has been granted for itself and others acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in the Software to reproduce, distribute copies to the public, prepare derivative works, and perform publicly and display publicly, and to permit other to do so.
License
See LICENSE file for licensing details
Acknowledgments
This research is supported as part of the ESS-DIVE repository, the Watershed Function Scientific Focus Area, and a DOE Early Career Project funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research under Award no. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing Center (NERSC), a U.S. Department of Energy Office of Science User Facility operated under Contract No. DE-AC02-05CH11231.
Owner
- Name: BASIN-3D
- Login: BASIN-3D
- Kind: organization
- Repositories: 4
- Profile: https://github.com/BASIN-3D
GitHub Events
Total
- Create event: 9
- Release event: 3
- Issues event: 14
- Watch event: 2
- Delete event: 4
- Issue comment event: 6
- Push event: 21
- Pull request review comment event: 10
- Pull request review event: 13
- Pull request event: 10
Last Year
- Create event: 9
- Release event: 3
- Issues event: 14
- Watch event: 2
- Delete event: 4
- Issue comment event: 6
- Push event: 21
- Pull request review comment event: 10
- Pull request review event: 13
- Pull request event: 10
Committers
Last synced: 10 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Val Hendrix | v****x@l****v | 41 |
| dschristianson | d****a@b****u | 40 |
| D.S. Christianson | d****n@u****m | 14 |
| Cat | c****g@l****v | 13 |
| Cat Wong | c****t@l****v | 6 |
| heycatwonton | c****g@b****u | 5 |
| Chris Mungall | c****m@b****g | 1 |
| heycatwonton | c****c@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 110
- Total pull requests: 46
- Average time to close issues: 11 months
- Average time to close pull requests: 11 days
- Total issue authors: 6
- Total pull request authors: 4
- Average comments per issue: 0.42
- Average comments per pull request: 1.15
- Merged pull requests: 41
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 15
- Pull requests: 15
- Average time to close issues: about 1 month
- Average time to close pull requests: 3 days
- Issue authors: 2
- Pull request authors: 2
- Average comments per issue: 0.6
- Average comments per pull request: 0.87
- Merged pull requests: 14
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- dschristianson (49)
- vchendrix (47)
- heycatwonton (8)
- helbashandy (2)
- charuleka (2)
- cmungall (1)
Pull Request Authors
- dschristianson (31)
- vchendrix (18)
- heycatwonton (4)
- cmungall (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 263 last-month
- Total dependent packages: 1
- Total dependent repositories: 1
- Total versions: 16
- Total maintainers: 2
pypi.org: basin3d
BASIN-3D Core Framework
- Documentation: https://basin3d.readthedocs.io/
- License: Broker for Assimilation, Synthesis and Integration of eNvironmental Diverse, Distributed Datasets (BASIN-3D) Copyright (c) 2019, The Regents of the University of California, through Lawrence Berkeley National Laboratory (subject to receipt of any required approvals from the U.S. Dept. of Energy). All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: (1) Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. (2) Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. (3) Neither the name of the University of California, Lawrence Berkeley National Laboratory, U.S. Dept. of Energy nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. You are under no obligation whatsoever to provide any bug fixes, patches, or upgrades to the features, functionality or performance of the source code ("Enhancements") to anyone; however, if you choose to make your Enhancements available either publicly, or directly to Lawrence Berkeley National Laboratory, without imposing a separate written license agreement for such Enhancements, then you hereby grant the following license: a non-exclusive, royalty-free perpetual license to install, use, modify, prepare derivative works, incorporate into other computer software, distribute, and sublicense such enhancements or derivative works thereof, in binary and source code form.
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Latest release: 1.3.0
published 11 months ago
Rankings
Maintainers (2)
Dependencies
- graphviz *
- h5py *
- sphinx *
- sphinx-autodoc-typehints *
- sphinx_rtd_theme *
- h5py *
- pandas ==1.1.5
- pydantic *
- pyyaml <6.0
- requests *
- tables *
- tinydb *
- actions/checkout v2 composite
- actions/setup-python v1 composite
- actions/upload-artifact v2 composite