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pytesmo

python Toolbox for the Evaluation of Soil Moisture Observations

https://github.com/TUW-GEO/pytesmo

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 5 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    11 of 20 committers (55.0%) from academic institutions
  • ✓
    Institutional organization owner
    Organization tuw-geo has institutional domain (geo.tuwien.ac.at)
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (16.9%) to scientific vocabulary

Keywords

climers earth-science geo python remote-sensing soil-moisture validation

Keywords from Contributors

frm4sm in-situ ismn qa4sm cci esa preprocess read sm
Last synced: 6 months ago · JSON representation

Repository

python Toolbox for the Evaluation of Soil Moisture Observations

Basic Info
Statistics
  • Stars: 82
  • Watchers: 9
  • Forks: 46
  • Open Issues: 14
  • Releases: 52
Topics
climers earth-science geo python remote-sensing soil-moisture validation
Created over 12 years ago · Last pushed 12 months ago
Metadata Files
Readme Changelog Contributing License Authors

README.rst 

pytesmo - a Python Toolbox for the Evaluation of Soil Moisture Observations
***************************************************************************

|ci| |cov| |pip| |doc|

.. |ci| image:: https://github.com/TUW-GEO/pytesmo/actions/workflows/ci.yml/badge.svg?branch=master
   :target: https://github.com/TUW-GEO/pytesmo/actions

.. |cov| image:: https://coveralls.io/repos/TUW-GEO/pytesmo/badge.png?branch=master
  :target: https://coveralls.io/r/TUW-GEO/pytesmo?branch=master

.. |pip| image:: https://badge.fury.io/py/pytesmo.svg
    :target: https://badge.fury.io/py/pytesmo

.. |doc| image:: https://app.readthedocs.org/projects/tuw-geo-pytesmo/badge/?version=latest
   :target: https://tuw-geo-pytesmo.readthedocs.io/en/latest/

pytesmo, the Python Toolbox for the Evaluation of Soil Moisture Observations, is
a package/python toolbox which aims to provide a library that can be used for
the comparison and validation of geospatial time series datasets with a
(initial) focus on soil moisture.

Documentation & Software Citation
=================================

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.596422.svg
   :target: https://doi.org/10.5281/zenodo.596422

To see the latest `full documentation `_
click on the docs badge at the top.

If you use the software in a publication then please cite it using the Zenodo
DOI.  Be aware that this badge links to the latest package version.

Please select your specific version at https://doi.org/10.5281/zenodo.596422 to
get the DOI of that version.  You should normally always use the DOI for the
specific version of your record in citations.  This is to ensure that other
researchers can access the exact research artefact you used for
reproducibility.

You can find additional information regarding DOI versioning at
http://help.zenodo.org/#versioning

If you want to contribute, take a look at the `developers guide
`_ .

Installation
============

This package can be installed through `pip
`__ which downloads the package
from the `python package repository Pypi `__.

.. code-block:: bash

    pip install pytesmo

Note that ``pytesmo>=0.17`` will only work with ``numpy>=2.0`` and ``python>=3.9``.
If you still require a version compatible with numpy v1, install ``pytesmo<0.17``.

Compiled C extensions are available as wheels for Windows and Linux for
python 3.9 to 3.12.

For other operating systems and/or python versions, it might be necessary
to compile the binaries yourself. This should
happen automatically, if you have a C compiler installed (e.g.
`GCC `_ ).

.. code::

    git clone https://github.com/TUW-GEO/pytesmo.git --recursive
    cd pytesmo
    mamba create -n pytesmo python=3.12 # or any supported python version
    conda activate pytesmo
    pip install -e .[testing]  # install source package
    python setup.py build_ext --inplace --cythonize  # optional compile cython C extensions
    pytest  # Run tests to check if everything works

Supported Products
==================

Soil moisture is observed using different methods and instruments, in this
version several satellite datasets as well as in situ and reanalysis data are supported
through independent and optional (reader) packages:

- `ERS & H-SAF ASCAT products `_
- `SMAP `_
- `GLDAS Noah `_
- `ERA5 and ERA5-Land `_
- `SMOS `_
- `C3S SM `_
- `ESA CCI SM `_
- `MERRA `_
- `Data from the International Soil Moisture Network (ISMN) `_
    In case of the ISMN, two different formats are provided:
    An example of how to use the dataset in the pytesmo validation framework can be
    found in the "Examples" chapter.
    * Variables stored in separate files (CEOP formatted)

Related Packages
================

Some former pytesmo modules are now provided as separate packages.

- `pygeogrids `_ : Creation and handling of Discrete Global Grids or Point collections
- `cadati `_ : Calender, Date and Time functions
- `repurpose `_ : Time series - image conversion and resampling routines
- `colorella `_ : Color maps and color map handling


Contribute
==========

We are happy if you want to contribute. Please raise an issue explaining what
is missing or if you find a bug. We will also gladly accept pull requests
against our master branch for new features or bug fixes.

Please follow the `developers guide
`_.

Owner

  • Name: TU Wien - Department of Geodesy and Geoinformation
  • Login: TUW-GEO
  • Kind: organization
  • Location: Vienna, Austria

GitHub Events

Total
  • Create event: 4
  • Issues event: 4
  • Release event: 4
  • Watch event: 3
  • Member event: 1
  • Issue comment event: 2
  • Push event: 11
  • Pull request event: 10
  • Fork event: 5
Last Year
  • Create event: 4
  • Issues event: 4
  • Release event: 4
  • Watch event: 3
  • Member event: 1
  • Issue comment event: 2
  • Push event: 11
  • Pull request event: 10
  • Fork event: 5

Committers

Last synced: 6 months ago

All Time
  • Total Commits: 864
  • Total Committers: 20
  • Avg Commits per committer: 43.2
  • Development Distribution Score (DDS): 0.675
Past Year
  • Commits: 13
  • Committers: 2
  • Avg Commits per committer: 6.5
  • Development Distribution Score (DDS): 0.154
Top Committers
Name Email Commits
Christoph Paulik c****k@g****t 281
Christoph Paulik c****k@g****m 192
Wolfgang Preimesberger w****r@g****t 148
Samuel Scherrer s****r@g****t 99
Pietro Stradiotti p****i@t****t 41
Sebastian s****n@g****t 31
D. Baum b****m@a****t 25
Andreea Plocon a****n@g****t 23
tmistelbauer t****r@g****m 5
tscanlon t****n@g****t 3
Manuel Schmitzer m****r@t****t 3
Teije van der Horst t****t@v****m 3
alegrub88 A****r@g****t 2
daberer 4****r 2
rogier r****r@v****m 1
pydev p****v@p****) 1
iteubner i****r@g****t 1
Zoltan Bakcsa b****a@a****t 1
Christoph Reimer c****r@g****t 1
teije01 t****1@g****m 1
Committer Domains (Top 20 + Academic)
geo.tuwien.ac.at: 9 vandersat.com: 2 awst.at: 2 tuwien.ac.at: 2 pydev-virtualbox.(none): 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 100
  • Total pull requests: 221
  • Average time to close issues: 10 months
  • Average time to close pull requests: 18 days
  • Total issue authors: 15
  • Total pull request authors: 16
  • Average comments per issue: 2.27
  • Average comments per pull request: 1.39
  • Merged pull requests: 205
  • Bot issues: 0
  • Bot pull requests: 1
Past Year
  • Issues: 2
  • Pull requests: 11
  • Average time to close issues: 5 days
  • Average time to close pull requests: about 3 hours
  • Issue authors: 2
  • Pull request authors: 3
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 10
  • Bot issues: 0
  • Bot pull requests: 1
View more stats
Top Authors
Issue Authors
  • cpaulik (41)
  • wpreimes (17)
  • sebhahn (9)
  • s-scherrer (9)
  • awst-baum (9)
  • tracyscanlon (5)
  • xushanthu-2014 (2)
  • aplocon (1)
  • AmenehTavakol (1)
  • ninadel (1)
  • Lmoesinger (1)
  • pstradio (1)
  • alegrub88 (1)
  • daberer (1)
  • alexgruber (1)
Pull Request Authors
  • cpaulik (91)
  • wpreimes (46)
  • s-scherrer (44)
  • pstradio (11)
  • sebhahn (8)
  • awst-baum (7)
  • teije01 (2)
  • daberer (2)
  • alegrub88 (2)
  • mazweg (2)
  • aplocon (1)
  • sheenaze (1)
  • Lmoesinger (1)
  • dependabot[bot] (1)
  • iteubner (1)
Top Labels
Issue Labels
enhancement (8) pytesmo_day (8) fixed in "develop" :-) (6) bug (4) qa4sm (2) installation (2) documentation (1) CI (1) question (1)
Pull Request Labels
dependencies (1) github_actions (1)

Packages

  • Total packages: 3
  • Total downloads:
    • pypi 2,049 last-month
  • Total dependent packages: 2
    (may contain duplicates)
  • Total dependent repositories: 13
    (may contain duplicates)
  • Total versions: 170
  • Total maintainers: 2
pypi.org: pytesmo

Python Toolbox for the evaluation of soil moisture observations

  • Versions: 60
  • Dependent Packages: 2
  • Dependent Repositories: 13
  • Downloads: 2,049 Last month
Rankings
Dependent repos count: 4.0%
Downloads: 5.2%
Average: 6.4%
Dependent packages count: 10.0%
Maintainers (2)
sebhahn wpreimes
Last synced: 6 months ago
proxy.golang.org: github.com/TUW-GEO/pytesmo
  • Versions: 55
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 7.0%
Average: 8.2%
Dependent repos count: 9.3%
Last synced: 6 months ago
proxy.golang.org: github.com/tuw-geo/pytesmo
  • Versions: 55
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 7.0%
Average: 8.2%
Dependent repos count: 9.3%
Last synced: 6 months ago

Dependencies

.github/workflows/ci.yml actions
  • actions/checkout v2 composite
  • actions/download-artifact v2 composite
  • actions/upload-artifact v2 composite
  • conda-incubator/setup-miniconda v2 composite
  • pypa/gh-action-pypi-publish v1.4.1 composite
pyproject.toml pypi
setup.py pypi
environment.yml pypi
  • ascat >=2.0
  • build *
  • cadati >=0.0.2
  • flake8 *
  • ipykernel *
  • ismn >=1.2.0
  • more_itertools *
  • nbconvert *
  • pre-commit *
  • pygeobase >=0.6.0
  • pygeogrids *
  • pynetcf >=0.4.0
  • pytest *
  • pytest-cov *
  • pytest-mpl *
  • repurpose >=0.7.1
  • yapf *