Recent Releases of coldpool
coldpool - coldpool 3.5-2
coldpool 3.5-2 (August 26, 2025)
DATA UPDATE
- Added finalized 2025 EBS shelf data.
- Added finalized 2025 GOA surface and 200 m data.
- Added preliminary 2025 NBS data.
FUNCTIONALITY CHANGES
- interpolate_variable() trims rasters to the extent with data using terra::trim().
- HTML
Published by sean-rohan-NOAA 6 months ago
coldpool - coldpool 3.5-1
coldpool 3.5-1 (August 20, 2025)
NEW FEATURES
- Added temperature timeseries from Gulf of Alaska and Aleutian
Islands bottom trawl surveys that are used for Alaska
Ecosystem Status Reports. Internal data sets:
- goameantemperature
- aimeantemperature
- interpolate_variable() makes rudimentary variogram plots.
- New cluster_spatraster() function to perform hierarchical cluster analysis on terra SpatRaster objects.
- New calcfixeddepthvarbt() function from gapctd to calculate variable values from oceanographic profiles (casts).
- New ggplot2 theme: themetimeseriesblue_strip().
DATA UPDATE
- Preliminary EBS shelf data update for 2025.
FUNCTIONALITY CHANGES
- thememultimapbluestrip() now includes a strip.background color.
- HTML
Published by sean-rohan-NOAA 6 months ago
coldpool - coldpool 3.4-3
coldpool 3.4-3 (March 7, 2025)
NEW FEATURES
- Added salinity rasters and time series as built-in data sets.
FUNCTIONALITY CHANGES
- Files from /data/ moved to /assets/ to allow lazy data.
- HTML
Published by sean-rohan-NOAA 12 months ago
coldpool - v3.3-1
coldpool 3.3-1 (February 23, 2023)
NEW FEATURES
- Added kriging_cv() function to compare kriging methods using cross-validation for ordinary kriging,co-kriging, and regression kriging.
- Added estimatezexpansion() function to estimate the vertical expansion factors for 3D kriging based on cross-validation.
- Added estimate_anisotropy() function for estimating 2D anisotropy in variograms using cross-validation.
- Added new file naming conventions and masking options to interpolate_variable(), which should deprecate data2raster() in a future release.
- HTML
Published by sean-rohan-NOAA almost 2 years ago
coldpool - v3.2-1: Finalized 2023 EBS and NBS data
This package update to version 3.2-1 includes finalized 2023 northern Bering Sea (EBS) data and data products. Finalized 2023 eastern Bering Sea (EBS) shelf data products were provided in the prior update (coldpool version 3.1-1).
Update: - Finalized bottom and surface temperature data from the 2023 NBS bottom trawl survey (ebsnbstemperaturefullarea.csv). - Finalized 2023 data products for the NBS and combined EBS+NBS (built-in data sets). - New figures showing 2023 data products for the NBS and combined EBS+NBS (plots directory).
- HTML
Published by sean-rohan-NOAA over 2 years ago
coldpool - v3.1-1
BUG FIX
Modified interpolate_variable to accept sf objects as an argument to select.region. Enables production of temperature products with a user-defined extent and matches functionality from prior to the switch from rgdal/raster/sp to terra/sf. Example: https://github.com/afsc-gap-products/coldpool/blob/main/analysis/romslevel3coldpool_part2.R
- HTML
Published by sean-rohan-NOAA over 2 years ago
coldpool - v3.0-1: Preliminary 2023 update
Preliminary update for 2023 that includes:
- 2023 EBS temperature products.
- Provisional NBS bottom temperature (no NBS surface temperature).
- New annual bottom temperature plots to /plots/annual_bt.
- Replacement of old raster package functionality with functions from the terra package.
The package and data products will be updated again once NBS data are finalized (by the end of September 2023).
- HTML
Published by sean-rohan-NOAA over 2 years ago
coldpool - 2.2: Interpolate to a raster stack
Added new functions provided by @kakearney to facilitate comparison between coldpool data products and Bering10K output.
New functions: - data2raster(): interpolates and mask variable to a raster stack using a user-specified interpolation method. - calcindiciestemp(): Calculates temperature indices from a .csv file. - parseregion(): Handles CRS transformation (w/ sf::sttransform) or retrieval of bottom trawl survey shapefiles (w/ akgfmaps::getbaselayers).
- HTML
Published by sean-rohan-NOAA almost 3 years ago
coldpool - 2.1: 2022 Finalized NBS
This update includes finalized 2022 northern Bering Sea (EBS) data and data products. Finalized 2022 eastern Bering Sea (EBS) shelf data products were provided in the prior update (coldpool version 2.1).
Update: - Finalized bottom and surface temperature data from the 2022 NBS bottom trawl survey (ebsnbstemperaturefullarea.csv). - Finalized 2022 data products for the NBS and combined EBS+NBS (built-in data sets). - New figures showing 2022 data products for the NBS and combined EBS+NBS (plots directory).
- HTML
Published by sean-rohan-NOAA over 3 years ago
coldpool - 2.0: 2022 Update
This update includes the 2022 EBS shelf bottom trawl survey temperature data products and preliminary 2022 NBS data products. NBS data products will be finalized in mid-September.
Update: - New bottom and surface temperature data from the 2022 EBS shelf bottom trawl survey. - Preliminary bottom and surface temperature data from the 2022 NBS bottom trawl survey (to be updated and finalized in mid-September 2022) - Updated 2022 data products for the EBS shelf (mean bottom temperature, mean surface temperature, cold pool area, temperature for strata < 100 m) and preliminary data products for the NBS and EBS+NBS. - New figures showing 2022 temperature data for the EBS and preliminary figures for the NBS and EBS+NBS.
- HTML
Published by sean-rohan-NOAA over 3 years ago
coldpool - 1.4
Added deprecated historical data sets to built in data: - Stratum-area weighted mean bottom and surface temperatures for EBS shelf standard and standard+PlusNW - Stratum-area weighted mean bottom and surface temperatures for the NBS - Mean bottom and surface temperatures from EBS hauls conducted at bottom depths < 100 m.
- HTML
Published by sean-rohan-NOAA almost 4 years ago
coldpool - 1.3
Added mean bottom temperature for EBS shelf standard strata with bottom temperature < 100m, which is obtained by masking bottom temperature rasters.
The data product time series is included in /R/sysdata.rda and can be accessed using:
coldpool::cold_pool_index$MEAN_BT_LT100M.
This data product replaces the mean bottom temperature < 100 m data set described in Nichol et al. (2019), which was calculated by averaging bottom temperature from all <100 m bottom depth survey stations in standard strata (i.e., excluding northwest strata).
Nichol, D.G., Kotwicki, S., Wilderbuer, T.K., Lauth, R.R., Ianelli, J.N., 2019. Availability of yellowfin sole Limanda aspera to the eastern Bering Sea trawl survey and its effect on estimates of survey biomass. Fish. Res. 211, 319–330. https://doi.org/10.1016/j.fishres.2018.11.017
- HTML
Published by sean-rohan-NOAA almost 4 years ago
coldpool - v0.3
Added support for NBS and full EBS.
Updates:
- Set up extent for interpolation grids in the NBS and full EBS
- Added NBS and full EBS masking using akgfmaps package
- Added full EBS + NBS query to inst/sql
- Added full EBS rasters for 2010, 2017, 2018, 2019, and 2021 to sysdata.rda
- Updated data documentation with information about full EBS rasters
- HTML
Published by sean-rohan-NOAA over 4 years ago