segtools

Package for analysis of genomic segmentations.

https://github.com/hoffmangroup/segtools

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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Academic email domains
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (3.3%) to scientific vocabulary

Last synced: 10 months ago · JSON representation ·

Repository

Package for analysis of genomic segmentations.

Basic Info

Host: GitHub
Owner: hoffmangroup
License: gpl-2.0
Language: Python
Default Branch: master
Homepage: http://pmgenomics.ca/hoffmanlab/proj/segtools
Size: 3.85 MB

Statistics

Stars: 0
Watchers: 2
Forks: 0
Open Issues: 34
Releases: 1

Created about 6 years ago · Last pushed about 3 years ago

Metadata Files

Readme Changelog License Citation

README.rst

========
Segtools
========
by Michael Hoffman 

License
=======
Segtools is free software: you can redistribute it and/or modify it under the terms of version 2 of the GNU General Public License as published by the Free Software Foundation.

Segtools is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE.

Owner

Name: hoffmangroup
Login: hoffmangroup
Kind: organization

Repositories: 15
Profile: https://github.com/hoffmangroup

Citation (CITATION.cff)

cff-version: 1.2.0
title: Segtools
version: 1.2.3
date-released: "2019-09-13"
message: If you use this software, please cite both the article from preferred-citation and the software itself.
abstract: This software implements a method of analyzing genomic segmentations
authors:
  - family-names: Hoffman
    given-names: Michael M.
    affiliation: "University Health Network"
    orcid: "https://orcid.org/0000-0002-4517-1562"
license: GPL-2.0-only
repository-code: "https://github.com/hoffmangroup/segtools"
url: "https://segtools.hoffmanlab.org"
preferred-citation:
  type: edited-work
  title: Exploratory analysis of genomic segmentations with Segtools
  year: 2011
  authors:
    - family-names: Buske
      given-names: Orion J.
      affiliation: "University of Washington"
      orcid: "https://orcid.org/0000-0002-9064-092X"
    - family-names: Hoffman
      given-names: Michael M.
      affiliation: "University of Washington"
      orcid: "https://orcid.org/0000-0002-4517-1562"
    - family-names: Ponts
      given-names: Nadia
      affiliation: "University of California"
    - family-names: Le Roch
      given-names: Karine G
      affiliation: "University of California"
      orcid: "https://orcid.org/0000-0002-4862-9292"
    - family-names: Hoffman
      given-names: Michael M.
      affiliation: "University of Washington"
      orcid: "https://orcid.org/0000-0002-4517-1562"
    - family-names: Noble
      affiliation: "University of Washington"
      orcid: "https://orcid.org/0000-0001-7283-4715"
      given-names: William Stafford
  doi: doi.org/10.1186/1471-2105-12-415
  volume: 12
  issue: 1
  journal: "BMC Bioinformatics"
  publisher:
    name: "BioMed Central"

GitHub Events

Total

Last Year

Packages

Total packages: 1
Total downloads:
- pypi 49 last-month

Total dependent packages: 1
Total dependent repositories: 3
Total versions: 23
Total maintainers: 2

pypi.org: segtools

tools for exploratory analysis of genomic segmentations

Homepage: https://hoffmanlab.org/proj/segtools
Documentation: https://segtools.readthedocs.io/
License: GPL-2.0-only
Latest release: 1.3.0
published about 3 years ago

Versions: 23
Dependent Packages: 1
Dependent Repositories: 3
Downloads: 49 Last month

Rankings

Dependent packages count: 4.7%

Dependent repos count: 9.0%

Average: 13.0%

Downloads: 25.3%

Maintainers (2)

hoffman Eric.Roberts

Last synced: 10 months ago

Dependencies

.github/workflows/continuous-integration-workflow.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
actions/upload-artifact v3 composite
r-lib/actions/setup-r v2 composite

.github/workflows/python-publish.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite

R/segtools/DESCRIPTION cran

environment.yml pypi

pyproject.toml pypi

numpy >=1.3
rpy2 >=2.6.0
six *
textinput *

ecosyste.ms

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