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planktonr

r Package for the analysis and visualisation of plankton data

https://github.com/planktonteam/planktonr

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.9%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

r Package for the analysis and visualisation of plankton data

Basic Info
Statistics
  • Stars: 5
  • Watchers: 1
  • Forks: 1
  • Open Issues: 23
  • Releases: 1
Created almost 5 years ago · Last pushed 10 months ago
Metadata Files
Readme License

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# planktonr 

[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
[![Windows](https://github.com/PlanktonTeam/planktonr/actions/workflows/Windows.yaml/badge.svg)](https://github.com/PlanktonTeam/planktonr/actions/workflows/Windows.yaml)
[![Ubuntu](https://github.com/PlanktonTeam/planktonr/actions/workflows/Ubuntu.yaml/badge.svg)](https://github.com/PlanktonTeam/planktonr/actions/workflows/Ubuntu.yaml)
[![MacOS](https://github.com/PlanktonTeam/planktonr/actions/workflows/MacOS.yaml/badge.svg)](https://github.com/PlanktonTeam/planktonr/actions/workflows/MacOS.yaml)
[![Codecov test coverage](https://codecov.io/gh/PlanktonTeam/planktonr/branch/main/graph/badge.svg)](https://app.codecov.io/gh/PlanktonTeam/planktonr?branch=main)
[![issues - planktonr](https://img.shields.io/github/issues/PlanktonTeam/planktonr)](https://github.com/PlanktonTeam/planktonr/issues)


`planktonr` is an r package that facilitates the download, analysis and visualisation of phytoplankton and zooplankton data. Our initial focus will be on plankton data stored on the Australian Ocean Data Network ([AODN](https://portal.aodn.org.au)) and collected by the Integrated Marine Observing System ([IMOS](www.imos.org.au)), but we hope to expand to other plankton data sets in the future. 

## Installation

Be aware that this package is in the very early stages of development. Functions and documentation are not complete so installing at the moment is at your own risk. If you are still interested, you can install the development version from [GitHub](https://github.com/) with:
``` r
# install.packages("devtools")
devtools::install_github("PlanktonTeam/planktonr")
```

Thanks to the team at the Integration and Application Network (ian.umces.edu/media-library) for the plankton symbols used in the planktonr hex sticker.

Owner

  • Name: The Plankton Team
  • Login: PlanktonTeam
  • Kind: organization
  • Location: Australia

The Plankton Team from the CSIRO, UQ, and IMOS

GitHub Events

Total
  • Create event: 6
  • Issues event: 5
  • Release event: 2
  • Delete event: 3
  • Push event: 75
  • Pull request event: 20
Last Year
  • Create event: 6
  • Issues event: 5
  • Release event: 2
  • Delete event: 3
  • Push event: 75
  • Pull request event: 20

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 813
  • Total Committers: 2
  • Avg Commits per committer: 406.5
  • Development Distribution Score (DDS): 0.383
Past Year
  • Commits: 82
  • Committers: 2
  • Avg Commits per committer: 41.0
  • Development Distribution Score (DDS): 0.171
Top Committers
Name Email Commits
Jason Everett j****t@g****m 502
clairedavies 2****s 311

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 46
  • Total pull requests: 81
  • Average time to close issues: 7 months
  • Average time to close pull requests: 2 days
  • Total issue authors: 2
  • Total pull request authors: 2
  • Average comments per issue: 0.91
  • Average comments per pull request: 0.0
  • Merged pull requests: 81
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 5
  • Pull requests: 19
  • Average time to close issues: N/A
  • Average time to close pull requests: 8 days
  • Issue authors: 2
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 19
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jaseeverett (40)
  • clairedavies (6)
  • ric325 (1)
Pull Request Authors
  • jaseeverett (65)
  • clairedavies (34)
Top Labels
Issue Labels
enhancement (16) bug (13) high priority (12) medium priority (7) CodeFix (4) low priority (2) documentation (1) help wanted (1) question (1)
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads: unknown
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 0
    (may contain duplicates)
  • Total versions: 2
proxy.golang.org: github.com/planktonteam/planktonr
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 10 months ago
proxy.golang.org: github.com/PlanktonTeam/planktonr
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 10 months ago

Dependencies

.github/workflows/test-coverage.yaml actions
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • R >= 2.10 depends
  • data.table * imports
  • dplyr * imports
  • ggplot2 * imports
  • htmltools * imports
  • leaflegend * imports
  • leaflet * imports
  • lubridate * imports
  • lutz * imports
  • magrittr * imports
  • patchwork * imports
  • purrr * imports
  • readr >= 2.0.0 imports
  • rlang * imports
  • rnaturalearth * imports
  • scales * imports
  • sf * imports
  • stats * imports
  • stringr * imports
  • suncalc * imports
  • tibble * imports
  • tidyr * imports
  • tidyselect * imports
  • units * imports
  • RNetCDF * suggests
  • covr * suggests
  • knitr * suggests
  • pracma * suggests
  • rmarkdown * suggests
  • rnaturalearthdata * suggests
  • testthat >= 3.0.0 suggests
  • thredds * suggests
  • yaImpute * suggests
  • zoo * suggests
.github/workflows/MacOS.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/Ubuntu.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/Windows.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/render-readme.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite