Data

Tools

Indexes

Applications

Experiments

Open Source Science

ALA4R

Access data and resources hosted by the Atlas of Living Australia (ALA)

https://github.com/AtlasOfLivingAustralia/ALA4R

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 13 committers (15.4%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (19.2%) to scientific vocabulary

Keywords

ala ala-product-ala4r r

Keywords from Contributors

biodiversity biology ecology
Last synced: 9 months ago · JSON representation

Repository

Access data and resources hosted by the Atlas of Living Australia (ALA)

Basic Info
Statistics
  • Stars: 41
  • Watchers: 30
  • Forks: 9
  • Open Issues: 22
  • Releases: 0
Archived
Topics
ala ala-product-ala4r r
Created over 11 years ago · Last pushed almost 5 years ago
Metadata Files
Readme

README.Rmd 

---
output: github_document
---



```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "vignettes/README-"
)
```

# ALA4R

[![Travis-CI Build Status](https://travis-ci.org/AtlasOfLivingAustralia/ALA4R.svg?branch=master)](https://travis-ci.org/AtlasOfLivingAustralia/ALA4R)
[![AppVeyor Build status](https://ci.appveyor.com/api/projects/status/g9pudc4l7053w4vn/branch/master?svg=true)](https://ci.appveyor.com/project/PeggyNewman/ala4r/branch/master)
[![codecov](https://codecov.io/gh/AtlasOfLivingAustralia/ALA4R/branch/master/graph/badge.svg)](https://codecov.io/gh/AtlasOfLivingAustralia/ALA4R)
[![CRAN Status](https://www.r-pkg.org/badges/version/ALA4R)](https://www.r-pkg.org/pkg/ALA4R)
[![CRAN Downloads](https://cranlogs.r-pkg.org/badges/grand-total/ALA4R)](https://cran.r-project.org/package=ALA4R)

*`ALA4R` is deprecated and will be removed from CRAN at the end of 2021. The package to replace ALA4R, `galah`, is now [available on CRAN](https://CRAN.R-project.org/package=galah). `galah` provides an improved interface to ALA data, while providing the same core functionality as ALA4R. For an introduction to `galah`, visit the [GitHub page](https://github.com/AtlasOfLivingAustralia/galah).*

The Atlas of Living Australia (ALA) provides tools to enable users of biodiversity information to find, access, combine and visualise data on Australian plants and animals; these have been made available from https://www.ala.org.au/. Here we provide a subset of the tools to be directly used within R.

ALA4R enables the R community to directly access data and resources hosted by the ALA.

The use-examples presented at the [2014 ALA Science Symposium](https://www.ala.org.au/blogs-news/2014-atlas-of-living-australia-science-symposium/) are available in the package vignette, via (in R): `vignette("ALA4R")`, or [browse it online](https://atlasoflivingaustralia.github.io/ALA4R/articles/ALA4R.html).

## Citing ALA4R 
To generate a citation for ALA4R run: 
```r
citation(package = "ALA4R")
```

## Installing

Stable version from CRAN:

```{r eval=FALSE}
install.packages("ALA4R")
```

Or the development version from GitHub:

```{r eval=FALSE}
install.packages("devtools")
devtools::install_github("AtlasOfLivingAustralia/ALA4R")
```

On Linux you will first need to ensure that `libcurl` and `v8` (version <= 3.15) are installed on your system --- e.g. on Ubuntu/Debian, open a terminal and do:

```{sh eval=FALSE}
sudo apt-get install libcurl4-openssl-dev libv8-3.14-dev
```
or install via the Software Centre.


## Usage

See the online documentation at https://atlasoflivingaustralia.github.io/ALA4R/ including the [package vignette](https://atlasoflivingaustralia.github.io/ALA4R/articles/ALA4R.html).

Owner

  • Name: Atlas of Living Australia
  • Login: AtlasOfLivingAustralia
  • Kind: organization
  • Email: support@ala.org.au
  • Location: Australia

Free and open source IT infrastructure for the aggregation and delivery of biodiversity data. Funded by the Australian government via NCRIS and hosted by CSIRO

GitHub Events

Total
Last Year

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 1,246
  • Total Committers: 13
  • Avg Commits per committer: 95.846
  • Development Distribution Score (DDS): 0.315
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Ben Raymond b****n@t****g 853
matilda2812 m****2@g****m 242
Jeremy VanDerWal j****l@g****m 64
Tasilee l****n@g****m 49
Peggy Newman p****n@g****m 22
Dave Martin d****n 3
Peter Ansell p****l@y****m 3
Tom Saleeba t****a@g****m 3
Martin Westgate m****e@g****m 2
Matt Andrews M****s@c****u 2
rforge rforge r****e@r****t 1
Dax Kellie d****e@c****u 1
mbohun m****n@g****m 1
Committer Domains (Top 20 + Academic)
csiro.au: 2 rforge.net: 1 theraymonds.org: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 57
  • Total pull requests: 11
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 1 day
  • Total issue authors: 15
  • Total pull request authors: 4
  • Average comments per issue: 2.63
  • Average comments per pull request: 0.82
  • Merged pull requests: 8
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • johnbaums (14)
  • raymondben (13)
  • peggynewman (8)
  • matildastevenson (5)
  • snubian (4)
  • Tasilee (3)
  • shawnlaffan (2)
  • terraignisaura (1)
  • nickdos (1)
  • sckott (1)
  • AugustT (1)
  • rdinnager (1)
  • mskyttner (1)
  • javier-molina (1)
  • dicook (1)
Pull Request Authors
  • matildastevenson (7)
  • djtfmartin (2)
  • mbohun (1)
  • tomsaleeba (1)
Top Labels
Issue Labels
case study (3) bug (2)
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads: unknown
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 0
    (may contain duplicates)
  • Total versions: 6
proxy.golang.org: github.com/atlasoflivingaustralia/ala4r
  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 7.0%
Average: 8.2%
Dependent repos count: 9.3%
Last synced: 10 months ago
proxy.golang.org: github.com/AtlasOfLivingAustralia/ALA4R
  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 7.0%
Average: 8.2%
Dependent repos count: 9.3%
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • assertthat * imports
  • data.table * imports
  • digest * imports
  • httr * imports
  • jsonlite >= 0.9.8 imports
  • sp * imports
  • stringr >= 1.0.0 imports
  • wellknown * imports
  • ape * suggests
  • covr * suggests
  • dplyr * suggests
  • ggplot2 * suggests
  • jpeg * suggests
  • knitr * suggests
  • mapdata * suggests
  • maps * suggests
  • maptools * suggests
  • phytools * suggests
  • rmarkdown * suggests
  • testthat * suggests
  • tidyr * suggests
  • vegan * suggests