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survey-live-temperature-map

These scripts create daily survey station daily temperature and anomaly plots as the ships work their way through the Bering Sea. These ships are conducting NOAA Fisheries' Alaska Fisheries Science Center's fisheries independent surveys in the Eastern Bering Sea. Scripts pull temperatures from google drive, entered by FPCs at sea, create daily maps and composite gifs, and then push the maps to google drive for the communications team.

https://github.com/afsc-gap-products/survey-live-temperature-map

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
    Found .zenodo.json file
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    DOI references
    Found 10 DOI reference(s) in README
  • ○
    Academic publication links
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    Committers with academic emails
    2 of 12 committers (16.7%) from academic institutions
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    Institutional organization owner
    Organization afsc-gap-products has institutional domain (www.fisheries.noaa.gov)
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (8.7%) to scientific vocabulary

Keywords

alaska climate data-visualization groundfish map noaa-fisheries temperature visualization

Keywords from Contributors

bibtex citations open-science writing
Last synced: 6 months ago · JSON representation

Repository

These scripts create daily survey station daily temperature and anomaly plots as the ships work their way through the Bering Sea. These ships are conducting NOAA Fisheries' Alaska Fisheries Science Center's fisheries independent surveys in the Eastern Bering Sea. Scripts pull temperatures from google drive, entered by FPCs at sea, create daily maps and composite gifs, and then push the maps to google drive for the communications team.

Basic Info
Statistics
  • Stars: 8
  • Watchers: 3
  • Forks: 1
  • Open Issues: 5
  • Releases: 4
Topics
alaska climate data-visualization groundfish map noaa-fisheries temperature visualization
Created almost 5 years ago · Last pushed 6 months ago
Metadata Files
Readme License

README.md

Near Real-Time Survey Progress and Temperature Maps Logo.

This code is always in development. Find code used for final products of this code in releases.

This code is primarally maintained by:

Emily Markowitz (Emily.Markowitz AT noaa.gov; @EmilyMarkowitz-NOAA)

Chris Anderson (Christopher.Anderson AT noaa.gov; @ChrisAnderson-NOAA)

And previously,

Caitlin Allen Akselrud (caitlin.allen_akselrud AT noaa.gov; @CaitlinAkselrud-NOAA)

Liz Dawson (Liz.Dawson AT noaa.gov; @liz-dawson-NOAA)

Alaska Fisheries Science Center,

National Marine Fisheries Service,

National Oceanic and Atmospheric Administration,

Seattle, WA 98115

Table of contents

Purpose

These scripts create daily survey station daily temperature and anomaly plots as the ships work their way through the Bering Sea. These ships are conducting NOAA Fisheries’ Alaska Fisheries Science Center’s fisheries independent surveys in the Eastern Bering Sea. Scripts pull temperatures from google drive, entered by FPCs at sea, create daily maps and composite gifs, and then push the maps to google drive for the communications team. These plots are displayed on the AFSC website

Notes

  • You will need to install ffmpeg so video files can compile using the magick package, which works well with Task Scheduler. The av R package does not seem to work with task scheduler.
  • How to set up the task scheduler
  • Files are saved to our internal dev FTP server and google drive.
  • Troubleshooting: if the task scheduler fails to run the code, but you can run the script in R or Rstudio, you may need to update Pandoc. If you are on a NOAA machine, ask IT to install the .msi file for you. Close and reopen everything and try again.

Plot Examples

Find more plot examples here.

Final stacked gifs

*NOAA* *Fisheries* *AFSC* *Groundfish* *Assessment* *Program* *conducted* *the* *Aleutian* *Islands* *bottom* *trawl* *survey.* *The* *near* *real-time* *ocean* *bottom* *temperatures* *depicted* *were* *collected* *June* *7-June* *21* *On* *June* *21,* *stations* *237-36* *(52.52°N,* *-172.26°W;* *\>3.5–4°C),* *236-36* *(52.52°N,* *-172.34°W;* *\>4–4.5°C),* *and* *238-37* *(52.57°N,* *-172.18°W;* *\>3.5–4°C)* *were* *surveyed* *by* *the* *F/V* *Ocean* *Explorer.* *No* *stations* *were* *surveyed* *by* *the* *F/V* *Alaska* *Provider.* *Credit:* *NOAA* *Fisheries* , *NOAA* *Fisheries* *Alaska* *Fisheries* *Science* *Center* *Groundfish* *Assessment* *Program* *is* *conducting* *the* *eastern* *Bering* *Sea* *and* *northern* *Bering* *Sea* *bottom* *trawl* *surveys.* *The* *near* *real-time* *ocean* *bottom* *temperatures* *depicted* *were* *collected* *May* *31-June* *22* *On* *June* *22,* *three* *stations* *were* *surveyed* *by* *the* *F/V* *Northwest* *Explorer.* *No* *stations* *were* *surveyed* *by* *the* *F/V* *Alaska* *Knight.* *There* *are* *8* *stations* *planned* *for* *June* *23* *Credit:* *NOAA* *Fisheries* , *NOAA* *Fisheries* *AFSC* *Groundfish* *Assessment* *Program* *conducted* *the* *eastern* *Bering* *Sea* *bottom* *trawl* *survey.* *The* *near* *real-time* *ocean* *bottom* *temperatures* *depicted* *were* *collected* *June* *2-June* *21* *On* *June* *21,* *stations* *K-04* *(58.33°N,* *-165.88°W;* *\>2–3°C),* *L-04* *(58.67°N,* *-165.89°W;* *\>2–3°C),* *and* *M-04* *(59°N,* *-165.9°W;* *\>3–4°C)* *were* *surveyed* *by* *the* *F/V* *Alaska* *Knight* *and* *stations* *K-05* *(58.33°N,* *-165.24°W;* *\>2–3°C),* *K-06* *(58.33°N,* *-164.61°W;* *\>2–3°C),* *and* *L-05* *(58.67°N,* *-165.25°W;* *\>2–3°C)* *were* *surveyed* *by* *the* *F/V* *Northwest* *Explorer.* *There* *are* *8* *stations* *planned* *for* *June* *22* *Credit:* *NOAA* *Fisheries* , *NOAA* *Fisheries* *Alaska* *Fisheries* *Science* *Center* *Groundfish* *Assessment* *Program* *is* *conducting* *the* *Gulf* *of* *Alaska* *bottom* *trawl* *survey.* *The* *near* *real-time* *ocean* *bottom* *temperatures* *depicted* *were* *collected* *May* *27-June* *22* *On* *June* *22,* *eight* *stations* *were* *surveyed* *by* *the* *F/V* *Alaska* *Provider* *and* *six* *stations* *were* *surveyed* *by* *the* *F/V* *Ocean* *Explorer.* *Stations* *yet* *to* *be* *sampled* *are* *shown* *as* *gray* *dots.* *Credit:* *NOAA* *Fisheries*

Blank, Grid-only Plot

*The* *NA* *bottom* *trawl* *survey.* *This* *survey* *covers* *the* *Central* *Aleutians,* *Eastern* *Aleutians,* *South* *Bering* *Sea,* *and* *Western* *Aleutians* *districts.* *Credit:* *NOAA* *Fisheries* , *Map* *of* *the* *eastern* *Bering* *Sea* *and* *northern* *Bering* *Sea* *2023* *survey* *stations* *with* *the* *50m,* *100m,* *and* *200m* *bathymetry* *lines.* *Credit:* *NOAA* *Fisheries.* , *Map* *of* *the* *eastern* *Bering* *Sea* *and* *northern* *Bering* *Sea* *2025* *survey* *station* *grid* *and* *the* *50* *m,* *100* *m,* *and* *200* *m* *bathymetry* *lines.* *Credit:* *NOAA* *Fisheries* , *The* *Gulf* *of* *Alaska* *bottom* *trawl* *survey.* *This* *survey* *covers* *the* *Shumagin,* *Chirikof,* *Kodiak,* *Yakutat,* *and* *Southeastern* *districts.* *Credit:* *NOAA* *Fisheries*

Mean Plot

The time series mean bottom temperatures from the NOAA Fisheries eastern Bering Sea (1982-2024; 42 years) and northern Bering Sea (2010-2023; 6 years) bottom trawl surveys. These data are publicly accessible on Fisheries One Stop Shop data platform (https://www.fisheries.noaa.gov/foss) and the coldpool R package (https://github.com/afsc-gap-products/coldpool). Credit: NOAA Fisheries

Anomaly Plot

Ocean bottom temperature anomaly of the mean bottom temperatures from the eastern (1982-2022; 40 years) and northern Bering Sea (2010-2022; 5 years) bottom trawl surveys compared to their respective 2023 survey stations. Credit: NOAA Fisheries

Relevant publications

Learn more about these surveys and ocean temperatures around Alaska (Hoff, 2016; Markowitz et al., 2024, 2024; Rohan et al., 2022; Siple et al., 2024; Von Szalay et al., 2023; Zacher et al., 2024).

Hoff, G. R. (2016). *Results of the 2016 eastern Bering Sea upper continental slope survey of groundfishes and invertebrate resources* (NOAA Tech. Memo. NOAA-AFSC-339). U.S. Dep. Commer.
Markowitz, E. H., Dawson, E. J., Wassermann, S., Anderson, C. B., Rohan, S. K., Charriere, B. K., and Stevenson, D. E. (2024). *Results of the 2023 eastern and northern Bering Sea continental shelf bottom trawl survey of groundfish and invertebrate fauna* (NOAA Tech. Memo. NMFS-AFSC-487; p. 242). U.S. Dep. Commer.
Rohan, S., Barnett, L., and Charriere, N. (2022). *Evaluating approaches to estimating mean temperatures and cold pool area from AFSC bottom trawl surveys of the eastern Bering Sea* (NOAA Tech. Memo. NMFS-AFSC-456; p. 42). U.S. Dep. Commer.
Siple, M. C., Szalay, P. G. von, Raring, N. W., Dowlin, A. N., and Riggle, B. C. (2024). *Data report: 2023 gulf of alaska bottom trawl survey* (NOAA Tech. Memo. AFSC processed report; 2024-09). U.S. Dep. Commer.
Von Szalay, P. G., Raring, N. W., Siple, M. C., Dowlin, A. N., Riggle, B. C., and Laman, E. A. and. (2023). *Data report: 2022 Aleutian Islands bottom trawl survey* (AFSC Processed Rep. 2023-07; p. 230). U.S. Dep. Commer.
Zacher, L. S., Richar, J. I., Fedewa, E. J., Ryznar, E. R., and Litzow, M. A. (2024). *The 2024 eastern Bering Sea continental shelf trawl survey: Results for commercial crab species DRAFT* \[NOAA Tech. Memo.\].

Suggestions and Comments

If you see that the data, product, or metadata can be improved, you are invited to create a pull request, submit an issue to the GitHub organization, or submit an issue to the code’s repository.

R Version Metadata

NOAA README

This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an ‘as is’ basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.

NOAA License

Software code created by U.S. Government employees is not subject to copyright in the United States (17 U.S.C. §105). The United States/Department of Commerce reserve all rights to seek and obtain copyright protection in countries other than the United States for Software authored in its entirety by the Department of Commerce. To this end, the Department of Commerce hereby grants to Recipient a royalty-free, nonexclusive license to use, copy, and create derivative works of the Software outside of the United States.

NOAA Fisheries

U.S. Department of Commerce | National Oceanographic and Atmospheric Administration | NOAA Fisheries

Owner

  • Name: AFSC GAP Survey Data Products
  • Login: afsc-gap-products
  • Kind: organization

An organization for tracking and fulfilling data requests by the survey team in the AFSC Groundfish Assessment Program.

GitHub Events

Total
  • Issues event: 5
  • Watch event: 1
  • Push event: 18
Last Year
  • Issues event: 5
  • Watch event: 1
  • Push event: 18

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 266
  • Total Committers: 12
  • Avg Commits per committer: 22.167
  • Development Distribution Score (DDS): 0.549
Past Year
  • Commits: 32
  • Committers: 1
  • Avg Commits per committer: 32.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Em Markowitz (NOAA) e****z@n****v 120
Emily.Markowitz E****z@n****l 94
Liz.Dawson L****n@n****l 25
Emily.Markowitz e****z 11
Caitlin Akselrud C****d@n****l 6
Liz Dawson 7****A 2
Emily Markowitz 1****z 2
liz-dawson-NOAA l****n@n****v 2
Caitlin Allen Akselrud NOAA 6****A 1
Liz.Dawson l****n 1
Christopher.Anderson c****n 1
Caitlin Akselrud c****d 1
Committer Domains (Top 20 + Academic)
noaa.gov: 2

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 13
  • Total pull requests: 10
  • Average time to close issues: 7 months
  • Average time to close pull requests: 1 minute
  • Total issue authors: 4
  • Total pull request authors: 2
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 10
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 5
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • EmilyMarkowitz-NOAA (9)
  • liz-dawson-NOAA (2)
  • sfregosi (1)
  • sean-rohan-NOAA (1)
Pull Request Authors
  • EmilyMarkowitz-NOAA (10)
  • liz-dawson-NOAA (1)
Top Labels
Issue Labels
enhancement (3) help wanted (1) communication/outreach (1) documentation (1) question (1)
Pull Request Labels
enhancement (1)