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biodivmapr

biodivMapR: an R package for α- and β-diversity mapping using remotely-sensed images

https://github.com/jbferet/biodivmapr

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.8%) to scientific vocabulary

Keywords

biodiversity diversity-mapping hyperspectral-imaging remote-sensing sentinel-2 tropical-forest

Keywords from Contributors

radiative-transfer-models
Last synced: 10 months ago · JSON representation

Repository

biodivMapR: an R package for α- and β-diversity mapping using remotely-sensed images

Basic Info
Statistics
  • Stars: 53
  • Watchers: 10
  • Forks: 14
  • Open Issues: 2
  • Releases: 16
Topics
biodiversity diversity-mapping hyperspectral-imaging remote-sensing sentinel-2 tropical-forest
Created almost 7 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog License

README.md

biodivMapR

An R package for α- and β-diversity mapping using remotely-sensed images

build licence version version

1 Install

The package remotes first needs to be installed from the CRAN

install.packages("remotes")

Then some packages which were removed from the CRAN may need to be installed directly from authors' repository. This is the case for dissUtils:

remotes::install_github('cran/dissUtils')

After installing remotesand dissUtils, biodivMapR should be ready for installation with the following command line in your R session:

remotes::install_github('jbferet/biodivMapR')

2 Tutorial

A tutorial vignette is available here.

The corresponding script is available in file examples/tutorial.R.

3 Citation

If you use biodivMapR, please cite the following references:

Féret, J.-B., de Boissieu, F., 2019. biodivMapR: an R package for α‐ and β‐diversity mapping using remotely‐sensed images. Methods Ecol. Evol. 00:1-7. https://doi.org/10.1111/2041-210X.13310

Féret, J.-B., Asner, G.P., 2014. Mapping tropical forest canopy diversity using high-fidelity imaging spectroscopy. Ecol. Appl. 24, 1289–1296. https://doi.org/10.1890/13-1824.1

4 Acknowledgments / Fundings

This research was supported by the Agence Nationale de la Recherche (ANR, France) through the young researchers project BioCop (ANR-17-CE32-0001)

Owner

  • Login: jbferet
  • Kind: user

GitHub Events

Total
  • Create event: 4
  • Release event: 1
  • Issues event: 14
  • Watch event: 9
  • Issue comment event: 17
  • Push event: 60
  • Pull request event: 4
  • Fork event: 1
Last Year
  • Create event: 4
  • Release event: 1
  • Issues event: 14
  • Watch event: 9
  • Issue comment event: 17
  • Push event: 60
  • Pull request event: 4
  • Fork event: 1

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 335
  • Total Committers: 5
  • Avg Commits per committer: 67.0
  • Development Distribution Score (DDS): 0.313
Past Year
  • Commits: 48
  • Committers: 2
  • Avg Commits per committer: 24.0
  • Development Distribution Score (DDS): 0.125
Top Committers
Name Email Commits
Jean-Baptiste Feret j****t@t****r 230
floriandeboissieu f****s@g****m 94
Florian de Boissieu f****u@i****r 7
jean-baptiste.feret j****t@i****r 3
Björn Grüning b****n@g****u 1
Committer Domains (Top 20 + Academic)
irstea.fr: 2 gruenings.eu: 1 teledetection.fr: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 33
  • Total pull requests: 10
  • Average time to close issues: 29 days
  • Average time to close pull requests: 26 days
  • Total issue authors: 27
  • Total pull request authors: 4
  • Average comments per issue: 2.48
  • Average comments per pull request: 0.2
  • Merged pull requests: 8
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 8
  • Pull requests: 4
  • Average time to close issues: 23 days
  • Average time to close pull requests: 3 days
  • Issue authors: 6
  • Pull request authors: 1
  • Average comments per issue: 1.38
  • Average comments per pull request: 0.5
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jofeggg (4)
  • rrsc1234 (2)
  • andreitapch (1)
  • wuqinyu291 (1)
  • liliy182 (1)
  • downey205 (1)
  • LucasXin1 (1)
  • Vro1234 (1)
  • valeolmo (1)
  • ahmedshovon (1)
  • CRyan1 (1)
  • CostaVM (1)
  • npuletti (1)
  • bianca-jms (1)
  • mixiangcheng (1)
Pull Request Authors
  • floriandeboissieu (8)
  • rnedelec (2)
  • bgruening (1)
  • tangrong1 (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 3
  • Total downloads: unknown
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 0
    (may contain duplicates)
  • Total versions: 20
proxy.golang.org: github.com/jbferet/biodivmapr
  • Versions: 9
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.7%
Last synced: 10 months ago
proxy.golang.org: github.com/jbferet/biodivMapR
  • Versions: 9
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Dependent repos count: 5.7%
Average: 5.9%
Forks count: 6.0%
Stargazers count: 6.3%
Last synced: 10 months ago
conda-forge.org: r-biodivmapr
  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Forks count: 40.9%
Average: 42.5%
Stargazers count: 43.7%
Dependent packages count: 51.2%
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • R.utils * imports
  • data.table * imports
  • dissUtils * imports
  • ecodist * imports
  • emstreeR * imports
  • fields * imports
  • future * imports
  • future.apply * imports
  • geometry * imports
  • labdsv * imports
  • matlab * imports
  • matrixStats * imports
  • methods * imports
  • mmand * imports
  • raster * imports
  • rgdal * imports
  • rgeos * imports
  • sf * imports
  • snow * imports
  • sp * imports
  • stars * imports
  • stringr * imports
  • tools * imports
  • vegan * imports
  • zip * imports
  • knitr * suggests
  • rmarkdown * suggests
  • testthat >= 2.0.0 suggests
.github/workflows/tic.yml actions
  • actions/checkout v2.3.4 composite
  • actions/upload-artifact v2.2.1 composite
  • pat-s/always-upload-cache v2.1.3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-tinytex v2 composite