Raphtory

Raphtory: The temporal graph engine for Rust and Python - Published in JOSS (2024)

https://github.com/pometry/raphtory

Science Score: 95.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 1 DOI reference(s) in JOSS metadata
  • Academic publication links
  • Committers with academic emails
    1 of 37 committers (2.7%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
    Published in Journal of Open Source Software

Keywords

analytics database embedded-database graph graph-database neo4j olap python rust temporal time-series

Keywords from Contributors

meshing standardization pde interpretability parallel sunpy sun solar-physics solar astropy

Scientific Fields

Mathematics Computer Science - 84% confidence
Last synced: 4 months ago · JSON representation

Repository

Scalable graph analytics database powered by a multithreaded, vectorized temporal engine, written in Rust

Basic Info
  • Host: GitHub
  • Owner: Pometry
  • License: gpl-3.0
  • Language: Rust
  • Default Branch: master
  • Homepage: https://raphtory.com
  • Size: 164 MB
Statistics
  • Stars: 520
  • Watchers: 12
  • Forks: 63
  • Open Issues: 178
  • Releases: 49
Topics
analytics database embedded-database graph graph-database neo4j olap python rust temporal time-series
Created over 8 years ago · Last pushed 4 months ago
Metadata Files
Readme Contributing License Security

README.md


Raphtory

Test and Build Latest Release Issues Crates.io PyPI PyPI Downloads Launch Notebook

🌍 Website   📒 Documentation   Pometry   🧙Tutorial   🐛 Report a Bug   Join Slack


Raphtory is an in-memory vectorised graph database written in Rust with friendly Python APIs on top. It is blazingly fast, scales to hundreds of millions of edges on your laptop, and can be dropped into your existing pipelines with a simple pip install raphtory.

It can be ran embedded or as a server instance using GraphQL, supports time traveling, full-text search, multilayer modelling, and advanced analytics beyond simple querying like automatic risk detection, dynamic scoring, and temporal motifs. With the subscription model, Raphtory also supports out-of-memory (on-disk) scaling with no performance loss!

If you wish to contribute, check out the open list of issues, bounty board or hit us up directly on slack. Successful contributions will be reward with swizzling swag!

Installing Raphtory

Raphtory is available for Python and Rust.

For python you must be using version 3.8 or higher and can install via pip: bash pip install raphtory For Rust, Raphtory is hosted on crates for Rust version 1.77 or higher and can be included in your project via cargo add: bash cargo add raphtory

Running a basic example

Below is a small example of how Raphtory looks and feels when using our Python APIs. If you like what you see, you can dive into a full tutorial here. ```python from raphtory import Graph from raphtory import algorithms as algo import pandas as pd

Create a new graph

graph = Graph()

Add some data to your graph

graph.addnode(timestamp=1, id="Alice") graph.addnode(timestamp=1, id="Bob") graph.addnode(timestamp=1, id="Charlie") graph.addedge(timestamp=2, src="Bob", dst="Charlie", properties={"weight": 5.0}) graph.addedge(timestamp=3, src="Alice", dst="Bob", properties={"weight": 10.0}) graph.addedge(timestamp=3, src="Bob", dst="Charlie", properties={"weight": -15.0})

Check the number of unique nodes/edges in the graph and earliest/latest time seen.

print(graph)

results = [["earliesttime", "name", "outdegree", "in_degree"]]

Collect some simple node metrics Ran across the history of your graph with a rolling window

for graphview in graph.rolling(window=1): for v in graphview.nodes: results.append( [graphview.earliesttime, v.name, v.outdegree(), v.indegree()] )

Print the results

print(pd.DataFrame(results[1:], columns=results[0]))

Grab an edge, explore the history of its 'weight'

cbedge = graph.edge("Bob", "Charlie") weighthistory = cbedge.properties.temporal.get("weight").items() print( "The edge between Bob and Charlie has the following weight history:", weighthistory )

Compare this weight between time 2 and time 3

weightchange = cbedge.at(2)["weight"] - cbedge.at(3)["weight"] print( "The weight of the edge between Bob and Charlie has changed by", weightchange, "pts", )

Run pagerank and ask for the top ranked node

topnode = algo.pagerank(graph).topk(5).maxitem() print( "The most important node in the graph is", topnode[0].name, "with a score of", top_node[1], ) ```

Output:

```a Graph(numberofedges=2, numberofnodes=3, earliesttime=1, latesttime=3)

| | earliesttime | name | outdegree | in_degree | |---|---------------|---------|------------|-----------| | 0 | 1 | Alice | 0 | 0 | | 1 | 1 | Bob | 0 | 0 | | 2 | 1 | Charlie | 0 | 0 | | 3 | 2 | Bob | 1 | 0 | | 4 | 2 | Charlie | 0 | 1 | | 5 | 3 | Alice | 1 | 0 | | 6 | 3 | Bob | 1 | 1 | | 7 | 3 | Charlie | 0 | 1 |

The edge between Bob and Charlie has the following weight history: [(2, 5.0), (3, -15.0)]

The weight of the edge between Bob and Charlie has changed by 20.0 pts

The top node in the graph is Charlie with a score of 0.4744116163405977 ```

GraphQL

As part of the python APIs you can host your data within Raphtory's GraphQL server. This makes it super easy to integrate your graphy analytics with web applications.

Below is a small example creating a graph, running a server hosting this data, querying it with our GraphQL client, or visualising your data in the UI.

```python from raphtory import Graph from raphtory.graphql import GraphServer import pandas as pd import os

URL for lord of the rings data from our main tutorial

url = "https://raw.githubusercontent.com/Raphtory/Data/main/lotr-with-header.csv" df = pd.read_csv(url)

Load the lord of the rings graph from the dataframe

graph = Graph() graph.loadedgesfrompandas(df,"time","srcid","dst_id")

Create a working_dir for your server and save your graph into it

You can save any number of graphs here or create them via the server ones its running

os.makedirs("graphs/", existok=True) graph.savetofile("graphs/lotrgraph")

Launch the server and get a client to it.

server = GraphServer(workdir="graphs/").start() client = server.getclient()

Run a basic query to get the names of the characters + their degree

results = client.query("""{ graph(path: "lotr_graph") { nodes { list{ name degree }
} } }""")

print(results) ```

Output:

bash Loading edges: 100%|██████████████| 2.65K/2.65K [00:00<00:00, 984Kit/s] Playground: http://localhost:1736 {'graph': {'nodes': [{'name': 'Gandalf', 'degree': 49}, {'name': 'Elrond', 'degree': 32}, {'name': 'Frodo', 'degree': 51}, {'name': 'Bilbo', 'degree': 21}, ... ] } }

GraphQL Playground

When you host a Raphtory GraphQL server you get a web playground bundled in, accessible on the same port within your browser (defaulting to 1736). Here you can experiment with queries on your graphs and explore the schema. An example of the playground can be seen below, running the same query as in the python example above.

GraphQL Playground

Graph Visualisation and Explorations

Once the GraphQL server is running, you can access the UI directly. If the server is hosted on port 1736, the UI will be available at http://localhost:1736. The UI allows you to search for data in Raphtory, explore connections, and visualise the graph effortlessly.

Graph User Interface

Getting started

To get you up and running with Raphtory we provide a full set of tutorials on the Raphtory website:

If API documentation is more your thing, you can dive straight in here!

Community

Join the growing community of open-source enthusiasts using Raphtory to power their graph analysis!

  • Follow Slack for the latest Raphtory news and development

  • Join our [Slack to chat with us and get answers to your questions!

Contributors

Bounty board

Raphtory is currently offering rewards for contributions, such as new features or algorithms. Contributors will receive swag and prizes!

To get started, check out our list of desired algorithms which include some low hanging fruit (🍇) that are easy to implement.

Benchmarks

We host a page which triggers and saves the result of two benchmarks upon every push to the master branch. View this here

License

Raphtory is licensed under the terms of the GNU General Public License v3.0 (check out our LICENSE file).

Owner

  • Name: Pometry
  • Login: Pometry
  • Kind: organization

JOSS Publication

Raphtory: The temporal graph engine for Rust and Python
Published
March 27, 2024
Volume 9, Issue 95, Page 5940
Authors
Ben Steer ORCID
Pometry, United Kingdom, School of Electronic Engineering and Computer Science, Queen Mary University of London, United Kingdom
Naomi A. Arnold ORCID
Networks Science Institute, Northeastern University London, United Kingdom
Cheick Tidiane ORCID
University of Milan, Italy, School of Electronic Engineering and Computer Science, Queen Mary University of London, United Kingdom
Renaud Lambiotte ORCID
Mathematical Institute, University of Oxford, United Kingdom, Pometry, United Kingdom, Alan Turing Institute, United Kingdom
Haaroon Yousaf ORCID
Pometry, United Kingdom
Lucas Jeub ORCID
Pometry, United Kingdom
Fabian Murariu
32 Bytes Software, United Kingdom
Shivam Kapoor
Pometry, United Kingdom
Pedro Rico ORCID
Pometry, United Kingdom
Rachel Chan
Pometry, United Kingdom
Louis Chan
Pometry, United Kingdom
James Alford
Pometry, United Kingdom
Richard G. Clegg ORCID
School of Electronic Engineering and Computer Science, Queen Mary University of London, United Kingdom
Felix Cuadrado ORCID
Universidad Politécnica de Madrid, Spain, School of Electronic Engineering and Computer Science, Queen Mary University of London, United Kingdom
Matthew Russell Barnes
School of Electronic Engineering and Computer Science, Queen Mary University of London, United Kingdom
Peijie Zhong
School of Electronic Engineering and Computer Science, Queen Mary University of London, United Kingdom
John Pougué-Biyong ORCID
Mathematical Institute, University of Oxford, United Kingdom
Alhamza Alnaimi
Pometry, United Kingdom
Editor
Luiz Irber ORCID
Tags
temporal networks graphs dynamics

GitHub Events

Total
  • Fork event: 10
  • Create event: 204
  • Commit comment event: 3
  • Release event: 6
  • Issues event: 182
  • Watch event: 168
  • Delete event: 191
  • Member event: 2
  • Issue comment event: 76
  • Push event: 1,387
  • Pull request event: 348
  • Pull request review comment event: 341
  • Pull request review event: 448
Last Year
  • Fork event: 10
  • Create event: 204
  • Commit comment event: 3
  • Release event: 6
  • Issues event: 182
  • Watch event: 169
  • Delete event: 191
  • Member event: 2
  • Issue comment event: 76
  • Push event: 1,388
  • Pull request event: 348
  • Pull request review comment event: 341
  • Pull request review event: 448

Committers

Last synced: 5 months ago

All Time
  • Total Commits: 1,623
  • Total Committers: 37
  • Avg Commits per committer: 43.865
  • Development Distribution Score (DDS): 0.796
Past Year
  • Commits: 251
  • Committers: 17
  • Avg Commits per committer: 14.765
  • Development Distribution Score (DDS): 0.685
Top Committers
Name Email Commits
ljeub-pometry 9****y 331
Haaroon Y H****n 265
Ben Steer b****r@q****k 204
Fabian Murariu m****n@g****m 159
Shivam Kapoor 4****r 144
Pedro Rico Pinazo r****o@g****m 131
Rachel Chan 2****n 120
Naomi Arnold 3****d 43
github-actions[bot] 4****] 41
dependabot[bot] 4****] 37
James Alford j****d@l****k 36
Shivam 4****0 17
Shivam 4****1 15
Alhamza Alnaimi A****- 12
Rutuja Surve r****e@g****m 12
Shivam Kapoor m****k@g****m 10
Louis Chan l****h@f****m 9
James Baross j****s@p****m 7
wyatt-joyner-pometry w****r@p****m 7
Abdullah Hasan d****o@g****m 3
nrs1729 5****9 2
lejohnyjohn6 j****e@g****m 2
Pometry-Team b****r@p****m 2
Abdullah Hasan d****v@d****m 1
Brandon Haugen b****n@h****m 1
Cheick Ba c****5@g****m 1
D4rkisek 1****k 1
David Morán 7****n 1
Fadhil Abubaker f****r@g****m 1
HTK55 8****5 1
and 7 more...
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 4 months ago

All Time
  • Total issues: 527
  • Total pull requests: 1,141
  • Average time to close issues: 4 months
  • Average time to close pull requests: 7 days
  • Total issue authors: 27
  • Total pull request authors: 30
  • Average comments per issue: 0.26
  • Average comments per pull request: 0.26
  • Merged pull requests: 935
  • Bot issues: 0
  • Bot pull requests: 122
Past Year
  • Issues: 194
  • Pull requests: 469
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 5 days
  • Issue authors: 15
  • Pull request authors: 19
  • Average comments per issue: 0.09
  • Average comments per pull request: 0.13
  • Merged pull requests: 355
  • Bot issues: 0
  • Bot pull requests: 34
Top Authors
Issue Authors
  • miratepuffin (256)
  • Haaroon (92)
  • ricopinazo (29)
  • ljeub-pometry (25)
  • shivamka1 (20)
  • narnolddd (20)
  • fabianmurariu (15)
  • Alnaimi- (12)
  • BaCk7 (11)
  • iamsmkr (11)
  • jbaross-pometry (9)
  • shivam-880 (7)
  • rachchan (4)
  • louisch (2)
  • haoxins (2)
Pull Request Authors
  • ljeub-pometry (272)
  • miratepuffin (144)
  • Haaroon (124)
  • ricopinazo (111)
  • fabianmurariu (104)
  • dependabot[bot] (65)
  • iamsmkr (64)
  • github-actions[bot] (57)
  • rachchan (39)
  • shivamka1 (24)
  • shivam-880 (23)
  • fabubaker (20)
  • narnolddd (18)
  • louisch (16)
  • jbaross-pometry (13)
Top Labels
Issue Labels
Semantics/API (71) Enhancement (65) Rust Core (61) Bug (60) Python (55) GraphQL (49) Algorithms (40) Documentation (25) Connector (20) Good first issue (20) CI/Actions (17) Performance/Benchmarking (11) Projections (9) Release (8) Duplicate (7) Testing (7) Meta (4) Javascript (4) Examples (4) Network Generation (3) Logging and Testing (3) osd '22 (3) good first issue (3) enhancement (2) Semantics (1) docker (1) dependencies (1)
Pull Request Labels
dependencies (65) Python (61) rust (3) Documentation (1) Algorithms (1) python (1)

Dependencies

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Cargo.lock cargo
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Cargo.toml cargo
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examples/custom-algorithm/Cargo.toml cargo
examples/rust/Cargo.toml cargo
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python/Cargo.toml cargo
raphtory/Cargo.toml cargo
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raphtory-benchmark/Cargo.toml cargo
raphtory-graphql/Cargo.toml cargo
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js-raphtory/example/package.json npm
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docs/requirements.txt pypi
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python/pyproject.toml pypi
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requirements.in pypi
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requirements.txt pypi
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  • jsonpickle ==3.0.1
  • kiwisolver ==1.4.4
  • lxml ==4.9.2
  • markupsafe ==2.1.2
  • matplotlib ==3.7.1
  • matplotlib-inline ==0.1.6
  • networkx ==3.1
  • numpy ==1.24.3
  • packaging ==23.1
  • pandas ==2.0.1
  • parsel ==1.8.1
  • parso ==0.8.3
  • pexpect ==4.8.0
  • pickleshare ==0.7.5
  • pillow ==9.5.0
  • prompt-toolkit ==3.0.38
  • protego ==0.2.1
  • ptyprocess ==0.7.0
  • pure-eval ==0.2.2
  • pyasn1 ==0.5.0
  • pyasn1-modules ==0.3.0
  • pycparser ==2.21
  • pydispatcher ==2.0.7
  • pygments ==2.15.1
  • pyopenssl ==23.1.1
  • pyparsing ==3.0.9
  • python-dateutil ==2.8.2
  • pytz ==2023.3
  • pyvis ==0.3.2
  • queuelib ==1.6.2
  • raphtory ==0.2.0
  • requests ==2.31.0
  • requests-file ==1.5.1
  • scipy ==1.10.1
  • scrapy ==2.8.0
  • seaborn ==0.12.2
  • service-identity ==21.1.0
  • six ==1.16.0
  • stack-data ==0.6.2
  • tldextract ==3.4.0
  • tqdm ==4.65.0
  • traitlets ==5.9.0
  • twisted ==22.10.0
  • typing-extensions ==4.5.0
  • tzdata ==2023.3
  • urllib3 ==1.26.15
  • w3lib ==2.1.1
  • wcwidth ==0.2.6
  • zope-interface ==6.0
examples/custom_python_extension/Cargo.toml cargo
examples/custom_python_extension/pyproject.toml pypi
  • raphtory *