Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 80 committers (2.5%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.3%) to scientific vocabulary
Repository
Course repository for Methods in Biodiversity Analysis
Basic Info
- Host: GitHub
- Owner: naturalis
- License: mit
- Language: HTML
- Default Branch: master
- Size: 604 MB
Statistics
- Stars: 22
- Watchers: 9
- Forks: 83
- Open Issues: 7
- Releases: 0
Metadata Files
README.md
Introduction
This repository contains materials for the MSc course Methods in Biodiversity Analysis, offered through a collaboration between Naturalis, IBL, and CML. The course is taught in the Sylvius Building (1.5.03) with some practicals in the Van Steenis Building, both on the main (bio)science campus of Leiden.
The goal of the course is to impart data science skills as relevant to biodiversity research. Technical topics to be covered will include research reproducibility (e.g. scripting) and data management (e.g. versioning), while the scientific applications will encompass biodiversity assessment using DNA sequence data (e.g. metabarcoding), geospatial data (e.g. ecological niche modeling) and phenotype/morphology data (e.g. morphometrics).
Preparations
The course will consist of lectures and hands-on computer practicals that require you to have the following:
- a working laptop, any major operating system is fine
- RStudio (open source edition)
- SQLite browser
- Java
- an account on the Galaxy portal
- an account on EoL
- an installation of Docker desktop (windows, mac, or the windows toolbox or mac toolbox)
Schedule
Owner
- Name: Naturalis Biodiversity Center
- Login: naturalis
- Kind: organization
- Location: Leiden, the Netherlands
- Website: https://www.naturalis.nl
- Repositories: 79
- Profile: https://github.com/naturalis
GitHub Events
Total
- Watch event: 1
- Push event: 7
- Fork event: 1
Last Year
- Watch event: 1
- Push event: 7
- Fork event: 1
Committers
Last synced: 10 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Rutger Vos | r****o@g****m | 853 |
| iadamo1 | i****o@u****l | 330 |
| Maarten van 't Zelfde | M****e@n****l | 58 |
| A-Hooft | 4****t | 7 |
| kikiF | 4****F | 7 |
| Lbussc | 4****c | 6 |
| rfrische | 5****e | 6 |
| shadrinafr | 4****r | 6 |
| s1712675 | 4****5 | 5 |
| acouzens | 3****s | 5 |
| JelleDercksen | 4****n | 5 |
| Bnbastiaans | 4****s | 5 |
| s1676989 | 5****9 | 4 |
| mikepawlik | 5****k | 4 |
| melanieflink | 5****k | 4 |
| mdoeland | 5****d | 4 |
| jlopdel | 4****l | 4 |
| VPeelen | 4****n | 4 |
| Rachel Pringle | 5****5 | 4 |
| Niki Kyriakopoulou | 4****9 | 4 |
| Niels Raes | n****s@n****l | 4 |
| KatrijnDeBock | 5****k | 4 |
| Evacologie | 5****e | 4 |
| AstridvdBurg | 5****g | 4 |
| s1426249 | 4****9 | 3 |
| rosebulteau | 4****u | 3 |
| pipvanaalst | 5****t | 3 |
| meeshoffmanns | 5****s | 3 |
| lmar116 | 3****6 | 3 |
| UnpaintedDoor | 4****r | 3 |
| and 50 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 50
- Total pull requests: 80
- Average time to close issues: 5 months
- Average time to close pull requests: about 21 hours
- Total issue authors: 2
- Total pull request authors: 70
- Average comments per issue: 1.46
- Average comments per pull request: 0.0
- Merged pull requests: 77
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- rvosa (49)
- iadamo1 (1)
Pull Request Authors
- rvosa (7)
- meeshoffmanns (2)
- vickybeckers (2)
- mikepawlik (2)
- judithtijm (2)
- nielsvanderwindt (1)
- Fabiosweet (1)
- AstridvdBurg (1)
- Maartenvtz (1)
- Smith-JH (1)
- DMeijerink (1)
- JordyvdB97 (1)
- king-ben (1)
- SamBoerlijst (1)
- Kwannie (1)