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nichemapr

R implementation of Niche Mapper software for biophysical modelling

https://github.com/mrke/nichemapr

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 12 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    3 of 7 committers (42.9%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.5%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

R implementation of Niche Mapper software for biophysical modelling

Basic Info
  • Host: GitHub
  • Owner: mrke
  • License: gpl-3.0
  • Language: R
  • Default Branch: master
  • Size: 35.9 MB
Statistics
  • Stars: 76
  • Watchers: 16
  • Forks: 37
  • Open Issues: 2
  • Releases: 12
Created over 10 years ago · Last pushed 10 months ago
Metadata Files
Readme License

README.md

NicheMapR

R implementation of Niche Mapper software for biophysical modelling

Copyright (C) 2018 Michael R. Kearney and Warren P. Porter

Installation from github: library(devtools) install_github('mrke/NicheMapR')

See also https://mrke.github.io/getting_started/

Citations:

Kearney, M. R., & Porter, W. P. (2017). NicheMapR - an R package for biophysical modelling: The microclimate model. Ecography, 40(5), 664–674. https://doi.org/10.1111/ecog.02360

Kearney, M. R., & Porter, W. P. (2020). NicheMapR – an R package for biophysical modelling: The ectotherm and Dynamic Energy Budget models. Ecography, 43(1), 85–96. https://doi.org/10.1111/ecog.04680

Kearney, M. R., Briscoe, N. J., Mathewson, P. D., & Porter, W. P. (2021). NicheMapR – an R package for biophysical modelling: The endotherm model. Ecography, 44(11), 1595–1605. https://doi.org/10.1111/ecog.05550

Kearney, M. R., Porter, W. P., & Huey, R. B. (2021). Modelling the joint effects of body size and microclimate on heat budgets and foraging opportunities of ectotherms. Methods in Ecology and Evolution, 12(13), 458–467. https://doi.org/10.1111/2041-210X.13528

Kearney, M. R., and Enriquez-Urzelai, U. (2023). A general framework for jointly modelling thermal and hydric constraints on developing eggs. Methods in Ecology and Evolution, 14(2), 583–595. https://doi.org/10.1111/2041-210X.14018

Kearney, M. R., and Leigh, A. (2024). Fast, accurate and accessible calculations of leaf temperature and its physiological consequences with NicheMapR. Methods in Ecology and Evolution, 15(9), 1516-1531. https://doi.org/10.1111/2041-210X.14373

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.

Owner

  • Name: Michael Kearney
  • Login: mrke
  • Kind: user
  • Location: Melbourne, Australia
  • Company: The University of Melbourne

GitHub Events

Total
  • Issues event: 4
  • Watch event: 9
  • Issue comment event: 10
  • Push event: 71
  • Pull request event: 2
  • Fork event: 5
Last Year
  • Issues event: 4
  • Watch event: 9
  • Issue comment event: 10
  • Push event: 71
  • Pull request event: 2
  • Fork event: 5

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 1,458
  • Total Committers: 7
  • Avg Commits per committer: 208.286
  • Development Distribution Score (DDS): 0.011
Past Year
  • Commits: 102
  • Committers: 1
  • Avg Commits per committer: 102.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
mrke m****e@u****u 1,442
Rafael Schouten r****n@g****m 9
Trollock j****6@c****u 3
Traci P. DuBose 3****y 1
Nick Golding g****5@g****m 1
Ilya Maclean i****n@e****k 1
Nicole Kearney n****y@N****l 1
Committer Domains (Top 20 + Academic)
exeter.ac.uk: 1 cornell.edu: 1 unimelb.edu.au: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 24
  • Total pull requests: 8
  • Average time to close issues: 5 months
  • Average time to close pull requests: 1 day
  • Total issue authors: 21
  • Total pull request authors: 6
  • Average comments per issue: 3.75
  • Average comments per pull request: 2.63
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 2
  • Average time to close issues: about 2 months
  • Average time to close pull requests: about 5 hours
  • Issue authors: 2
  • Pull request authors: 2
  • Average comments per issue: 3.0
  • Average comments per pull request: 1.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • everydayduffy (2)
  • yjtw (2)
  • fipoucat (2)
  • dswethey (1)
  • plorch (1)
  • megbalk (1)
  • I-Hickman (1)
  • sfmatter (1)
  • aleixab (1)
  • green-striped-gecko (1)
  • zhengxy79 (1)
  • goldingn (1)
  • DocMartins (1)
  • dklinges9 (1)
  • Haowen-He (1)
Pull Request Authors
  • goldingn (2)
  • aleixab (2)
  • rafaqz (2)
  • TraciPopejoy (1)
  • dklinges9 (1)
  • ilyamaclean (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads: unknown
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 0
    (may contain duplicates)
  • Total versions: 14
proxy.golang.org: github.com/mrke/nichemapr
  • Versions: 7
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 10 months ago
proxy.golang.org: github.com/mrke/NicheMapR
  • Versions: 7
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • RNetCDF * imports
  • deSolve * imports
  • ncdf4 * imports
  • raster * imports
  • Hmisc * suggests
  • RNCEP * suggests
  • devtools * suggests
  • futile.logger * suggests
  • geonames * suggests
  • jpeg * suggests
  • jsonlite * suggests
  • knitr * suggests
  • lattice * suggests
  • mcera5 * suggests
  • microclima * suggests
  • plotrix * suggests
  • png * suggests
  • readr * suggests
  • rmarkdown * suggests
  • rutils * suggests