cifonauta

Marine biology image database by CEBIMar/USP

https://github.com/bruvellu/cifonauta

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (4.9%) to scientific vocabulary

Keywords

cnpq database django image-database marine-biology postgresql python scientific zoology
Last synced: 6 months ago · JSON representation

Repository

Marine biology image database by CEBIMar/USP

Basic Info
Statistics
  • Stars: 26
  • Watchers: 4
  • Forks: 7
  • Open Issues: 35
  • Releases: 1
Topics
cnpq database django image-database marine-biology postgresql python scientific zoology
Created about 15 years ago · Last pushed 10 months ago
Metadata Files
Readme Contributing License Code of conduct Codeowners Security

README.md

:ocean: Cifonauta, an image database for marine biology

The Cifonauta database showcases the outstanding biodiversity of our oceans. We have a vast collection of photos and videos featuring a wide range of marine organisms. These include the common creatures you may come across on the beach, as well as the rarest forms that can only be observed under a microscope. The images were captured by scientists during their research and are accompanied by accurate scientific information, such as taxonomic classification, geolocation, habitat, life stage, size, and links to primary literature. Whether you are searching for your favorite organism or simply want to explore the diversity of marine larvae or gelatinous creatures, our thematic tours, offer a curated experience. All the contents are available under Creative Commons licenses.

Explore the marine biodiversity at cifonauta.cebimar.usp.br

How to cite

Individual photo or video:

Inácio Domingos da Silva Neto. Dinoflagellate (image). Cifonauta: marine biology image database. Available at https://cifonauta.cebimar.usp.br/media/8945/ Accessed on 2024-06-23.

The database itself:

Vellutini BC, Migotto AE (2011). Cifonauta: marine biology image database. Available at https://cifonauta.cebimar.usp.br/ Accessed on 2024-06-23.

Credits

The Cifonauta database was created by the Center for Marine Biology of the University of São Paulo (CEBIMar/USP).

Creators

  • Bruno C. Vellutini: Created the Cifonauta database and coordinated the development of v1 and v2. Contributed with shaping the concept, obtaining funding, designing the database and website, developing the backend and frontend, testing the application, curating the data, managing the repository and servers, and maintaining the codebase over the years.
  • Alvaro E. Migotto: Created the Cifonauta database and coordinated the development of v1 and v2. Contributed with creating the concept, obtaining funding, formulating features and implementation ideas, testing the application, and curating the data.

Contributors

Version 1 (2011–2024)

  • Roberto Faga: Improved the search interface and taxon navigation. Contributed with coding for the frontend.
  • Allan Rodrigo de Lima: Provided IT support. Contributed with setting up the servers that host the website.

Version 2 (2024–today)

  • Virginia Castilho: CEBIMar project manager of this version. Contributed with obtaining funding, planning and managing the project, formulating workflows and implementation ideas, testing the application, fixing bugs, and curating the data.
  • IN Junior Team (Luiz Felyppe Nunes dos Santos, Vitória Oliveira, João Diniz, Arthur Ferreira, João Guilherme Storti Scatambuli, Larissa Nascimento, Rian Breno Polonini): Developed the new admin dashboard and responsive design. Contributed with formulating workflows, designing implementations, and developing the new features in the backend and frontend of the application.
  • Marcelo Kitahara: Tested the new dashboard workflows. Contributed with testing the application.
  • Joel Simberg Vieira: Provided IT support. Contributed with setting up the virtual machines for hosting the website.

Content

  • Authors, curators, and editors: created, edited, and curated the photos and videos featured in the Cifonauta database. See the full list of contributors.

Funding

Current team

Owner

  • Name: Bruno C. Vellutini
  • Login: bruvellu
  • Kind: user
  • Location: Dresden, Germany

Evolutionary developmental biologist interested in microscopy, image processing, and marine biodiversity

GitHub Events

Total
  • Create event: 2
  • Release event: 1
  • Issues event: 54
  • Watch event: 4
  • Delete event: 11
  • Issue comment event: 41
  • Push event: 157
  • Pull request review event: 8
  • Pull request review comment event: 6
  • Pull request event: 14
  • Fork event: 2
Last Year
  • Create event: 2
  • Release event: 1
  • Issues event: 54
  • Watch event: 4
  • Delete event: 11
  • Issue comment event: 41
  • Push event: 157
  • Pull request review event: 8
  • Pull request review comment event: 6
  • Pull request event: 14
  • Fork event: 2

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 2,566
  • Total Committers: 14
  • Avg Commits per committer: 183.286
  • Development Distribution Score (DDS): 0.307
Past Year
  • Commits: 419
  • Committers: 3
  • Avg Commits per committer: 139.667
  • Development Distribution Score (DDS): 0.062
Top Committers
Name Email Commits
Bruno Vellutini o****s@g****m 1,779
felyppe nunes l****e@i****r 314
nelas n****e@n****e 211
INJRVitoriaOliveira v****a@i****r 87
João Diniz j****z@i****r 55
Arthur Simoes Ferreira a****a@i****r 50
Storti-Scatambuli j****i@i****r 22
Virginia Castilho 1****a 20
Roberto Faga r****a@g****m 8
Roberto Faga f****a@c****t 8
Alexandre a****o@o****m 6
Larissa Nascimento l****o@i****r 4
Rian Breno Polonini r****o@i****r 1
Roberto Faga Jr f****a@f****) 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 138
  • Total pull requests: 114
  • Average time to close issues: 12 months
  • Average time to close pull requests: 6 days
  • Total issue authors: 4
  • Total pull request authors: 9
  • Average comments per issue: 0.87
  • Average comments per pull request: 0.18
  • Merged pull requests: 97
  • Bot issues: 0
  • Bot pull requests: 13
Past Year
  • Issues: 27
  • Pull requests: 16
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 3 days
  • Issue authors: 2
  • Pull request authors: 3
  • Average comments per issue: 0.74
  • Average comments per pull request: 0.25
  • Merged pull requests: 12
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • bruvellu (130)
  • castilhovirginia (9)
  • Felyppe1 (2)
  • gepetobio (2)
Pull Request Authors
  • Felyppe1 (36)
  • Storti-Scatambuli (26)
  • bruvellu (14)
  • dependabot[bot] (12)
  • alexanmx (10)
  • castilhovirginia (10)
  • joaopedrodiniz (8)
  • ArthurSimoesFerreira (7)
  • INJRVitoriaOliveira (1)
Top Labels
Issue Labels
bug (31) improvement (27) improve (25) feature (19) fixme (18)
Pull Request Labels
fixme (19) feature (16) dependencies (12) improvement (10) bug (3)

Dependencies

requirements.txt pypi
  • django ==2.2.28
  • django-debug-toolbar *
  • django-modeltranslation ==0.17.3
  • django-mptt *
  • django-rosetta *
  • fabric *
  • patchwork *
  • pillow *
  • psycopg2 ==2.8.6
  • requests *
  • sorl-thumbnail *
  • wheel *