casal2

Integrated Population Dynamics Model (Casal2)

https://github.com/casal2/casal2

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
    1 of 30 committers (3.3%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (11.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Integrated Population Dynamics Model (Casal2)

Basic Info
  • Host: GitHub
  • Owner: Casal2
  • License: gpl-2.0
  • Language: C++
  • Default Branch: master
  • Homepage: https://casal2.github.io
  • Size: 2.1 GB
Statistics
  • Stars: 27
  • Watchers: 15
  • Forks: 25
  • Open Issues: 6
  • Releases: 16
Created about 13 years ago · Last pushed about 1 year ago
Metadata Files
Readme License

README.md

Casal2 Windows release build Validation Pass

Casal2

Casal2 is an open-source age or length structured population dynamics modelling package. The Casal2 software implements generalised age- or length-structured population models that allow for a great deal of choice in specifying the population dynamics, parameter estimation, and model outputs. Casal2 is designed for flexibility. It can implement an age- or length-structured models for a single population or multiple populations using user-defined categories such as area, sex, and maturity. These structural elements are generic and not predefined, and are easily constructed. Casal2 models can be used for a single population with a single anthropogenic event (in a fish population model this would be a single fishery), or for multiple species and populations, areas, and/or anthropogenic or exploitation methods, and including predator-prey interactions.

This repository contains the required libraries and source code to compile and run Casal2. This project is covered under the GNU General Public License version 2. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Releases

The most recent production version of Casal2 is available here.

Community

Casal2 has a dedicated Slack server available here. You're free to join the Slack community and ask questions or provide feedback.

Owner

  • Name: Casal2
  • Login: Casal2
  • Kind: user
  • Location: Wellington, New Zealand
  • Company: NIWA

GitHub Events

Total
  • Create event: 1
  • Release event: 1
  • Issues event: 11
  • Issue comment event: 19
  • Push event: 40
Last Year
  • Create event: 1
  • Release event: 1
  • Issues event: 11
  • Issue comment event: 19
  • Push event: 40

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 3,193
  • Total Committers: 30
  • Avg Commits per committer: 106.433
  • Development Distribution Score (DDS): 0.646
Past Year
  • Commits: 151
  • Committers: 1
  • Avg Commits per committer: 151.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Scott Rasmussen (Zaita) s****t@z****m 1,130
Craig Marsh C****h@n****z 791
Teresa Amar z****a@u****u 679
Alistair Dunn a****1@g****m 283
Craig44 c****h@b****z 53
Samik Datta s****a@n****z 44
Teresa A'mar t****r@n****z 41
Craig44 C****h@b****z 41
Kath k****e@n****z 29
smormede s****e@n****z 15
largek l****k 14
doonanij i****n@n****z 12
Caroline Johnston c****n@n****z 11
nobody n****y@O****t 9
Alex Pletzer a****r@g****t 8
Cyrill1 c****0@g****m 7
NIWAFisheriesModelling C****2@n****z 6
Marco Kienzle m****e@g****m 4
jyqalan d****u@n****z 3
Dave Campbell d****l@n****z 2
marshc m****c@w****l 2
Arnaud Grüss g****d@g****m 1
root r****t@O****t 1
Alistair Dunn a****1@g****m 1
David Daish d****d@d****e 1
Richard Bian r****n@n****z 1
Roberto Osegueda r****a@n****z 1
Ryan Darby r****y@n****z 1
Vidette McGregor V****r@n****z 1
jzha336 j****6@a****z 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 119
  • Total pull requests: 3
  • Average time to close issues: over 1 year
  • Average time to close pull requests: 4 months
  • Total issue authors: 11
  • Total pull request authors: 2
  • Average comments per issue: 1.61
  • Average comments per pull request: 3.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 8
  • Pull requests: 2
  • Average time to close issues: 3 months
  • Average time to close pull requests: 9 months
  • Issue authors: 4
  • Pull request authors: 1
  • Average comments per issue: 1.88
  • Average comments per pull request: 4.5
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • Zaita (55)
  • largek (18)
  • alistairdunn1 (17)
  • smormede (15)
  • Craig44 (15)
  • doonanij (7)
  • hoyles (3)
  • Maschette (2)
  • NIWAFisheriesModelling (2)
  • mkienzle (1)
  • rleadbett (1)
  • SamikDatta (1)
Pull Request Authors
  • SamikDatta (3)
  • NIWAFisheriesModelling (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

.github/workflows/Casal2LinuxBuild.yml actions
  • actions/checkout v2 composite
  • actions/download-artifact v1.0.0 composite
  • actions/setup-python v2.2.2 composite
  • actions/upload-artifact v2.2.4 composite
  • bwoodsend/setup-winlibs-action v1 composite
  • egor-tensin/setup-gcc v1 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/Casal2WindowsBuild.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2.2.2 composite
  • actions/upload-artifact v2.2.4 composite
  • bwoodsend/setup-winlibs-action v1 composite
R-libraries/DataWeighting/DESCRIPTION cran
R-libraries/casal/DESCRIPTION cran
  • R >= 2.10.1 depends
R-libraries/casal2/DESCRIPTION cran
R-libraries/casal_utils/DESCRIPTION cran
Dockerfile docker
  • rocker/r-ver 3.6.3 build
Documentation/ReadTheDocs/requirements.txt pypi
  • groundwork-sphinx-theme *
  • myst-parser *
docker-compose.yml docker