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Recent Releases of https://github.com/charlesrocabert/metevolsim

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.6.3

  • Updated copyrights

- Python
Published by charlesrocabert over 3 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.6.2

  • Updated copyright

- Python
Published by charlesrocabert about 4 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.6.1

  • Updated README

- Python
Published by charlesrocabert over 4 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.6.0

  • Updated README content
  • Added the method flux_drop_analysis to the Model class: > For each flux, the wild-type flux is dropped by a given drop coefficient and the relative MOMA distance between wild-type and dropped target fluxes is computed (the method temporarily modifies kinetic formulas with a real coefficient). This measure gives a measure of flux essentiality, or "enzyme essentiality score".
  • Added a method to write the reaction to species map

- Python
Published by charlesrocabert over 4 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.5.6

  • Updated copyright

- Python
Published by charlesrocabert about 5 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.5.5

  • Minor update in README.md

- Python
Published by charlesrocabert over 5 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.5.4

  • Improved the example section

- Python
Published by charlesrocabert almost 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.5.3

  • Updated README.md

- Python
Published by charlesrocabert almost 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.5.2

  • Improved the calculation of the shortest paths,
  • Displays KEGG ids in model statistics.

- Python
Published by charlesrocabert almost 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.5.0

  • Removed the relative metabolic sum selection,
  • Added example scripts,
  • Removed the "scripts" folder,
  • Added new results.

- Python
Published by charlesrocabert about 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.13

  • Do not consider anymore parameters with no defined values in simulations
  • Write a list of variables in text files when creating a SBML model
  • General improvement of the code structure

- Python
Published by charlesrocabert about 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.12

  • Debug: Variable names were not updated in the mutant model.

- Python
Published by charlesrocabert about 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.11

  • Improved model stability control. If 10 successive mutations lead to unstability, a critical error is raised.

- Python
Published by charlesrocabert about 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.10

  • Improved SBML mutant model stability control.

- Python
Published by charlesrocabert about 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.9

  • MetEvolSim does not use anymore species names which often collide. Only use species identifiers.
  • A file "variables.txt" containing the list of variable names, identifiers and compartment is written each time a model is created.
  • Improved CPS files edition and communication with CopasiSE.
  • Some cosmetic corrections.

- Python
Published by charlesrocabert about 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.8

  • Fully implemented the random sensitivity analysis and updated README accordingly,
  • Updated copyright.

- Python
Published by charlesrocabert over 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.7

  • Removed minor errors in README.md

- Python
Published by charlesrocabert over 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.6

  • Python package case sensitivity debugging (2)

- Python
Published by charlesrocabert over 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.5

  • Python package case sensitivity debugging

- Python
Published by charlesrocabert over 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.4

  • Removed a bug in the calculation of MCA

- Python
Published by charlesrocabert over 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.3

  • Removed a bug in the calculation of MCA

- Python
Published by charlesrocabert over 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.2

- Python
Published by charlesrocabert over 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.1

  • Made picture URLs compatible with pypi

- Python
Published by charlesrocabert over 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.4.0

  • Added the possibility to perform a metabolic control analysis (MCA) with Copasi,
  • Added the possibility to compute shortest path lengths between all pairs of metabolites,
  • Improved README.

- Python
Published by charlesrocabert over 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.3.0

- Python
Published by charlesrocabert over 6 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.2.3

- Python
Published by charlesrocabert almost 7 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.2.2

- Python
Published by charlesrocabert almost 7 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.2.1

- Python
Published by charlesrocabert almost 7 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.2.0

- Python
Published by charlesrocabert almost 7 years ago

https://github.com/charlesrocabert/metevolsim - MetEvolSim pre-release v0.1.0

- Python
Published by charlesrocabert about 7 years ago