https://github.com/senresearch/flxqtl.jl - v2.1.0

FlxQTL v2.1.0

Diff since v2.0.2

• Correct the right version upgrade: v.2.0.2 -> v.2.1.0
• Bug fixes and add new functions of permutationTest() implemented by geneScan with LOCO to get improved thresholds.

Merged pull requests: - Add permutationTest() for LOCO (#52) (@hkim89)

- Julia
Published by github-actions[bot] 10 months ago

https://github.com/senresearch/flxqtl.jl - v2.0.2

FlxQTL v2.0.2

Diff since v2.0.1

Bugs fixed in mlmTest() in the flxMLM module

Merged pull requests: - Bug fixes in mlmTest() (#51) (@hkim89)

- Julia
Published by github-actions[bot] 10 months ago

https://github.com/senresearch/flxqtl.jl - v2.0.1

FlxQTL v2.0.1

Diff since v2.0.0

• fixed minor bugs for mlm 1D, 2D scan functions in the module flxMLM.

Merged pull requests: - Bug fixed for mlm functions (#50) (@hkim89)

- Julia
Published by github-actions[bot] 11 months ago

https://github.com/senresearch/flxqtl.jl - v2.0.0

FlxQTL v2.0.0

Diff since v1.0.0

• Package upgrade to v. 2.0.0

Breaking changes

• A new module flxMLM including 1D, 2D scan, permutation test functions added for low heritability data
• Bugs fixed, inputs in some functions rearranged
• Document updated for 2D scan

Merged pull requests: - Upgrade v. 2.0.0 and fix bugs (#49) (@hkim89)

- Julia
Published by github-actions[bot] 11 months ago

https://github.com/senresearch/flxqtl.jl - v1.0.0

FlxQTL v1.0.0

Diff since v0.3.2

• Version upgrade to v. 1.0.0 for numerical stability

Breaking changes

• All existing scan functions and permutations have changed by running penalized log likelihood functions
• New functions are included: gene1Scan, gene2Scan for pre-estimating a Kc matrix automatically inside, and getKc for separately precomputing Kc.
  
• New keyword arguments for Inverse-Wishart prior distribution information are included, e.g. df_prior, Prior
• Pkg documentation is updated accordingly

Merged pull requests: - Update underlying implementation using prior (penalized likelihood) (#46) (@hkim89) - priors for random terms (FlxQTL, MLMM) are added and tested (#47) (@hkim89) - Upgrade to the penalized version for FlxQTL (#48) (@hkim89)

- Julia
Published by github-actions[bot] about 1 year ago

https://github.com/senresearch/flxqtl.jl - v0.3.2

FlxQTL v0.3.2

Diff since v0.3.1

Merged pull requests: - Decoupled QTLplot module (#45) (@GregFa)

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/senresearch/flxqtl.jl - v0.3.1

FlxQTL v0.3.1

Diff since v0.3.0

Merged pull requests: - update dependencies and fix bugs for type Kc in geneScan. (#40) (@hkim89) - minor bugs fixed. version up to v.0.3.1 (#41) (@hkim89) - add ci.yml and remove travis, appveyor (#42) (@hkim89) - comment out QTLPlot module and update project.toml (#43) (@hkim89) - Updated Project.toml (#44) (@GregFa)

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/senresearch/flxqtl.jl - v0.3.0

FlxQTL v0.3.0

Diff since v0.2.0

Minor upgrade for FlxQTL : adding an additional option to return -log_10{p-values}' ingeneScanfunction, updating 'kinshipLoco' in submodule GRM andpermTest` in submodule FlxMLMM for numerical stability, and fix bugs.

Merged pull requests: - Create CODEOFCONDUCT.md (#31) (@hkim89) - update getGenoidx for maf filtering (#32) (@hkim89) - remove unnecessary argument description in geneScan (#33) (@hkim89) - CompatHelper: bump compat for "Distributions" to "0.25" (#34) (@github-actions[bot]) - CompatHelper: bump compat for "LossFunctions" to "0.7" (#35) (@github-actions[bot]) - fixed triggering travis issues (#36) (@hkim89) - Update README.md (#37) (@hkim89) - FlxQTL v 0.3.0 updated (#38) (@hkim89) - add test sets for FlxQTL v.0.3.0 (#39) (@hkim89)

- Julia
Published by github-actions[bot] over 4 years ago

https://github.com/senresearch/flxqtl.jl - v0.2.0

FlxQTL v0.2.0

Diff since v0.1.1

add environment scan function (envScan) and fix bugs

Merged pull requests: - modified section on BLAS vendors. (#24) (@sens) - add environment scan functions and minor update in doc (#25) (@hkim89) - add more test examples in test (#26) (@hkim89) - Revert "add more test examples in test" (#27) (@hkim89) - fixed test examples and correspoonding functions (#28) (@hkim89) - add more test examples including envScan, scans for 4 cross, kinship's (#29) (@hkim89) - upgrade version adding envScan and fixing bugs (#30) (@hkim89)

- Julia
Published by github-actions[bot] about 5 years ago

https://github.com/senresearch/flxqtl.jl - v0.1.1

FlxQTL v0.1.1

Diff since v0.1.0

New release : v.0.1.1 Fixed minor bugs and version conflict in Compat, and add functionality in 'plot1d'

Merged pull requests: - Update analysis.md (#17) (@christiantobias) - Update analysis.md (#18) (@christiantobias) - Update analysis.md (#19) (@christiantobias) - CompatHelper: bump compat for "Distributions" to "0.24" (#20) (@github-actions[bot]) - CompatHelper: bump compat for "Revise" to "3.1" (#21) (@github-actions[bot]) - CompatHelper: bump compat for "Distributions" to "0.24" (#23) (@github-actions[bot])

- Julia
Published by github-actions[bot] about 5 years ago

https://github.com/senresearch/flxqtl.jl - v0.1.0

FlxQTL v0.1.0

Merged pull requests: - CompatHelper: add new compat entry for "StatsBase" at version "0.33" (#5) (@github-actions[bot]) - CompatHelper: add new compat entry for "Revise" at version "3.1" (#10) (@github-actions[bot]) - CompatHelper: add new compat entry for "PyPlot" at version "2.9" (#11) (@github-actions[bot]) - CompatHelper: add new compat entry for "Distributions" at version "0.24" (#12) (@github-actions[bot]) - CompatHelper: add new compat entry for "LossFunctions" at version "0.6" (#13) (@github-actions[bot]) - Update .travis.yml (#14) (@GregFa) - Changes to README. (#15) (@sens)

- Julia
Published by github-actions[bot] over 5 years ago