https://github.com/0rc0/orbita_ai

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CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
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DOI references
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (3.8%) to scientific vocabulary

Last synced: 10 months ago · JSON representation

Repository

Created almost 3 years ago · Last pushed over 1 year ago

Readme

code for the paper (citation pending): Deep Learning Model for Automated Segmentation of Orbital Structures in MRI Images

scripts/: exemplificatory sbatch script for Slurm cluster
notebooks/: contains the code for training and testing the model on a local machine

MakeUNetDataset.ipynb: creates the five-fold cross-validation datasets for nnU-Net
grab_train_results.ipynb: grabs the training results from the nnU-Net training logs
grab_test_results.ipynb: calculate DSC for the test sets
Volumes.ipynb: calculate the volumes of the orbital structures

Sharing code for neuroimaging research. Credits for profile picture: @lastknight"