https://github.com/radonpy/radonpy - RadonPy version 0.2.9

Future expansion: switching QM solvers Future expansion: switching force field Improvement: RESP calculations can be performed for all elements Fix: undefined variable in error messages of radonpy.sim.helper Fix: undefined variable in radonpy.sim.lammps.MolToLAMMPSdataBlock

- Python
Published by yhayashi1986 over 2 years ago

https://github.com/radonpy/radonpy - RadonPy version 0.2.8

Implementation: read and write functions of a JSON file Implementation: IO helper functions for pipe-lining scripts Improvement: update sample scripts Bug fix: efield and dipole LAMMPS commands

- Python
Published by yhayashi1986 almost 3 years ago

https://github.com/radonpy/radonpy - RadonPy version 0.2.7

Enhancement: compatible for Python 3.11 Enhancement: compatible for Psi4 1.8 Enhancement: compatible for LAMMPS-23Jun2022 Bug fix: optimization convergence error had occur due to the scratch file of optimization remaining. Bug fix: undefined variable in sim.psi4_wrapper.Psi4w.scan

- Python
Published by yhayashi1986 about 3 years ago

https://github.com/radonpy/radonpy - RadonPy verion 0.2.6

Enhancement: convergence of DFT optimization in the molecules having a linear angle. Enhancement: changing behavior of psi4mp=1 in conformationsearch to avoid out of memory during psi4 running. Enhancement: changing behavior of mp=1 in polarizability calculation to avoid out of memory during psi4 running. Bug fix: for sample scripts

- Python
Published by yhayashi1986 about 3 years ago

https://github.com/radonpy/radonpy - RadonPy version 0.3.0 beta2

Implementation: reverse resolution of the Force Field Descriptors Implementation: MIC computation and visualization for the Force Field Descriptors Implementation: function of extracting side chains from SMILES (poly.extractsidechain) Improvement: new interface of the Force Field Descriptors Improvement: some improvement are imported from v0.2.3-v0.2.5 Change: default value of polar in Force Field Descriptors is changed to True Change: default value of sigma in the Force Field Descriptor with kernel mean is changed to 1/nk/sqrt(2) Change: default value of stats in the Force Field Descriptor with summary statistics is changed to ['mean', 'std', 'max', 'min'] Bug fix: some bug fixes are imported from v0.2.3-v0.2.5 Bug fix: behavior of poly.terminaterw when H is entered in mol1

- Python
Published by yhayashi1986 about 3 years ago

https://github.com/radonpy/radonpy - RadonPy verion 0.2.5

Improvement: added switching of the append keyword in the LAMMPS log file.

- Python
Published by yhayashi1986 about 3 years ago

https://github.com/radonpy/radonpy - RadonPy version 0.2.4

• Bug fix: Definition error in radonpy.sim.md.Dynamics

- Python
Published by yhayashi1986 over 3 years ago

https://github.com/radonpy/radonpy - RadonPy version 0.2.3

• Implementation: calculation of wavelength depended polarizability (radonpy.sim.qm.polarizability_sos)
• Implementation: calculation of wavelength depended refractive index (radonpy.sim.qm.refractiveindexsos)
• Implementation: calculation of abbe's number (radonpy.sim.qm.abbenumbersos)
• Improvement: charge and multiplicity of molecules are automatically set in radonpy.sim.psi4_wrapper.Psi4w
• Improvement: add yaml files of the conda enviroment to easily install RadonPy
• Bug fix: wrong code in the reflactive index calculation of copolymers (radonpy.core.calc.refractive_index)
• Bug fix: return values of atomic coordinates of radonpy.sim.psi4_wrapper.Psi4w.scan
• Bug fix: global variables (variables in radonpy.core.const) did not inherit to child processes

- Python
Published by yhayashi1986 over 3 years ago

https://github.com/radonpy/radonpy - RadonPy version 0.2.2

• Psi4 version 1.6 is now supported.
• Implemented potential energy surface scan by Psi4.
• Implemented constrained geometry optimization by Psi4.
• Added CCSD method for polarizability calculation to psi4_wrapper.Psi4w.cc2_polar.
• Fixed a bug that caused failure of geometry optimization in Psi4 for certain molecules due to failure of inverse transformation of internal coordinates.
• Fixed return values when poly.polyinfo_classifier caused an error.
• Fixed a bug that caused failure of 3D coordinates generation for certain molecules in utils.mol_from_smiles.
• Fixed a bug that caused an error in poly.substruct_match_smiles_list.
• Improved availability checks for LAMMPS packages.

- Python
Published by yhayashi1986 almost 4 years ago

https://github.com/radonpy/radonpy - RadonPy version 0.2.1

• Fixed memory leak in the generation of polymer chains and simulation cells.
• Changed behavior when the OpenMP parallel count setting for LAMMPS is 0 and 1.
• Fixed to be able to use LAMMPS OPT package.
• Changed default value of multiprocessing parallel count setting in the conformation search and polarizability calculation.

- Python
Published by yhayashi1986 about 4 years ago

https://github.com/radonpy/radonpy - v0.2.0

RadonPy version 0.2.0

- Python
Published by yhayashi1986 about 4 years ago