https://github.com/3mmarand/cidmap
A shiny app to explore the characterisation of Mesenchymal Stromal Cells in clinical trial reports
Science Score: 23.0%
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Found 7 DOI reference(s) in README -
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Low similarity (6.8%) to scientific vocabulary
Last synced: 10 months ago
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Repository
A shiny app to explore the characterisation of Mesenchymal Stromal Cells in clinical trial reports
Basic Info
- Host: GitHub
- Owner: 3mmaRand
- License: mit
- Language: R
- Default Branch: master
- Size: 681 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 6 years ago
· Last pushed over 4 years ago
https://github.com/3mmaRand/CIDMap/blob/master/
[](https://doi.org/10.5281/zenodo.4012398)## Clinical trial identifiers for MSCs (CIDMap): A shiny app to explore the characterisation of mesenchymal stromal cells in clinical trial reports Prepared to support: Wilson, A. J., Rand, E., Webster, A. J., & Genever, P. G. (2021). Characterisation of mesenchymal stromal cells in clinical trial reports: analysis of published descriptors. Stem cell research & therapy, 12 (1), 360. https://doi.org/10.1186/s13287-021-02435-1 **Abstract:** Mesenchymal stem or stromal cells (MSCs) are the most widely used cell therapy to date. They are heterogeneous, with variations in growth potential, differentiation capacity and protein expression profile depending on tissue source and production process. Nomenclature and defining characteristics have been debated for almost 20 years, yet the generic term MSC is used to cover a wide range of cellular phenotypes. Against a documented lack of definition of cellular populations used in clinical trials, our study evaluated the extent of characterization of the cellular population or study drug. A literature search of clinical trials involving mesenchymal stem/stromal cells was refined to 84 papers upon application of pre-defined inclusion/exclusion criteria. Thirty-two studies (38.1%) include no characterization data whatsoever. Forty-one (48.8%) reported average values per marker for all cell lots used in the trial, and only eleven (13.1%) studies included individual values per cell lot. Viability was reported in 57% of studies. Differentiation was discussed: osteogenesis (29% of papers) adipogenesis (27%) and chondrogenesis (20%); and other functional assays arose in 6 papers (7%). Extent of characterization was not related to clinical phase of development. Assessment of functionality was very limited and did not always relate to likely mechanism of action. We discuss the potential implications of these findings for the use of MSCs in regenerative medicine, and the importance of characterization for transparency and comparability of literature. ## [Launch app](https://shiny.york.ac.uk/er13/CIDMap/) ## Please cite as Rand, Emma, Wilson, Alison, & Genener, Paul G. (2020). Clinical trial identifiers for MSCs (CIDMap): A shiny app to explore the characterisation of mesenchymal stromal cells in clinical trial reports (v1.0). Zenodo. https://doi.org/10.5281/zenodo.4012398
Owner
- Name: Emma Rand
- Login: 3mmaRand
- Kind: user
- Location: York, UK
- Company: University of York
- Repositories: 79
- Profile: https://github.com/3mmaRand
Lecturer at @UniOfYork sharing my enthusiasm for all things data, mainly in R. Ridiculously lucky. Talks too fast, thinks too slow.
## Clinical trial identifiers for MSCs (CIDMap): A shiny app to explore the characterisation of mesenchymal stromal cells in clinical trial reports
Prepared to support:
Wilson, A. J., Rand, E., Webster, A. J., & Genever, P. G. (2021). Characterisation of mesenchymal stromal cells in clinical trial reports: analysis of published descriptors. Stem cell research & therapy, 12 (1), 360. https://doi.org/10.1186/s13287-021-02435-1
**Abstract:** Mesenchymal stem or stromal cells (MSCs) are the most widely used cell therapy to date. They are heterogeneous, with variations in growth potential, differentiation capacity and protein expression profile depending on tissue source and production process. Nomenclature and defining characteristics have been debated for almost 20 years, yet the generic term MSC is used to cover a wide range of cellular phenotypes. Against a documented lack of definition of cellular populations used in clinical trials, our study evaluated the extent of characterization of the cellular population or study drug. A literature search of clinical trials involving mesenchymal stem/stromal cells was refined to 84 papers upon application of pre-defined inclusion/exclusion criteria. Thirty-two studies (38.1%) include no characterization data whatsoever. Forty-one (48.8%) reported average values per marker for all cell lots used in the trial, and only eleven (13.1%) studies included individual values per cell lot. Viability was reported in 57% of studies. Differentiation was discussed: osteogenesis (29% of papers) adipogenesis (27%) and chondrogenesis (20%); and other functional assays arose in 6 papers (7%). Extent of characterization was not related to clinical phase of development. Assessment of functionality was very limited and did not always relate to likely mechanism of action. We discuss the potential implications of these findings for the use of MSCs in regenerative medicine, and the importance of characterization for transparency and comparability of literature.
## [Launch app](https://shiny.york.ac.uk/er13/CIDMap/)
## Please cite as
Rand, Emma, Wilson, Alison, & Genener, Paul G. (2020). Clinical trial identifiers for MSCs (CIDMap): A shiny app to explore the characterisation of mesenchymal stromal cells in clinical trial reports (v1.0). Zenodo. https://doi.org/10.5281/zenodo.4012398