tripr
This is a read-only mirror of the git repos at https://bioconductor.org
Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Scientific vocabulary similarity
Low similarity (15.4%) to scientific vocabulary
Repository
This is a read-only mirror of the git repos at https://bioconductor.org
Basic Info
- Host: GitHub
- Owner: bioc
- License: mit
- Language: R
- Default Branch: devel
- Size: 9.41 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
tripr 
T-cell Receptor/Immunoglobulin Profiler (TRIP)
Description
tripr is a Bioconductor package, written in
shiny that provides analytics services on
antigen receptor (B cell receptor immunoglobulin, BcR IG | T cell
receptor, TR) gene sequence data. Every step of the analysis can be
performed interactively, thus not requiring any programming skills. It
takes as input the output files of the IMGT/HighV-Quest
tool. Users can select to
analyze the data from each of the input samples separately, or the
combined data files from all samples and visualize the results
accordingly.
Functions for an R command-line use are also available.
Installation
tripr is distributed as a Bioconductor
package and requires R (version "4.2"), which can be installed on any
operating system from CRAN, and
Bioconductor (version "3.15").
To install tripr package enter the following commands in your R session:
```r if (!requireNamespace("BiocManager", quietly = TRUE)) { install.packages("BiocManager") }
BiocManager::install("tripr")
Check that you have a valid Bioconductor installation
BiocManager::valid() ```
Launching the app
Once tripr is successfully installed, it can be loaded as follow:
r
library(tripr)
User Guide
To view documentation for the version of this package installed in your system, start R and enter:
r
browseVignettes("tripr")
Owner
- Name: bioc
- Login: bioc
- Kind: organization
- Repositories: 1
- Profile: https://github.com/bioc
Citation (CITATION.cff)
# YAML 1.2
---
authors:
-
family-names: Kotouza
given-names: "Maria Th."
orcid: "https://orcid.org/0000-0002-5375-5410"
-
family-names: Gemenetzi
given-names: Katerina
orcid: "https://orcid.org/0000-0002-0216-0257"
-
family-names: Galigalidou
given-names: Chrysi
-
family-names: Vlachonikola
given-names: Elisavet
orcid: "https://orcid.org/0000-0003-4609-9977"
-
family-names: Pechlivanis
given-names: Nikolaos
orcid: "https://orcid.org/0000-0003-2502-612X"
-
family-names: Agathangelidis
given-names: Andreas
orcid: "https://orcid.org/0000-0002-8467-7945"
-
family-names: Sandaltzopoulos
given-names: Raphael
orcid: "https://orcid.org/0000-0002-8490-4300"
-
family-names: Mitkas
given-names: "Pericles A."
-
family-names: Stamatopoulos
given-names: Kostas
-
family-names: Chatzidimitriou
given-names: Anastasia
-
family-names: Psomopoulos
given-names: "Fotis E."
orcid: "https://orcid.org/0000-0002-0222-4273"
cff-version: "1.1.0"
date-released: 2020-09-29
doi: "10.1186/s12859-020-03669-1"
keywords:
- "Antigen receptor"
- "Software pipeline"
- "R shiny"
license: MIT
message: "If you use this software, please cite it using these metadata."
repository-code: "https://github.com/BiodataAnalysisGroup/TRIP"
title: "T-cell Receptor/Immunoglobulin Profiler (TRIP)"
version: "0.99.0"
...
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