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https://github.com/4dnucleome/partseg-smfish

PartSeg and napari plugin for smfish data

https://github.com/4dnucleome/partseg-smfish

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (15.8%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

PartSeg and napari plugin for smfish data

Basic Info
  • Host: GitHub
  • Owner: 4DNucleome
  • License: bsd-3-clause
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 74.2 KB
Statistics
  • Stars: 1
  • Watchers: 4
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Created almost 4 years ago · Last pushed about 1 year ago
Metadata Files
Readme License

README.md

PartSeg-smfish

License BSD-3 PyPI Python Version tests codecov napari hub

PartSeg and napari plugin for smfish data

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install PartSeg-smfish via pip:

pip install PartSeg-smfish

To install latest development version :

pip install git+https://github.com/4DNucleome/PartSeg-smfish.git

Installation in bundled PartSeg

It is possible to ues PartSeg-smfish in bundled PartSeg. To do this download PartSeg from PartSeg webpage https://partseg.github.io/#download_bundle or from github release page https://github.com/4DNucleome/PartSeg/releases.

Then download PartSeg-smfish from this repository using link https://github.com/4DNucleome/PartSeg-smfish/archive/refs/heads/main.zip

Unzip the downloaded file and copy PartSeg_smfish folder from src to PartSeg folder in the downloaded PartSeg/_internal/plugins.

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "PartSeg-smfish" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Owner

  • Name: 4DNucleome
  • Login: 4DNucleome
  • Kind: organization

GitHub Events

Total
  • Delete event: 5
  • Issue comment event: 3
  • Push event: 11
  • Pull request review event: 3
  • Pull request review comment event: 2
  • Pull request event: 12
  • Create event: 2
Last Year
  • Delete event: 5
  • Issue comment event: 3
  • Push event: 11
  • Pull request review event: 3
  • Pull request review comment event: 2
  • Pull request event: 12
  • Create event: 2

Committers

Last synced: over 3 years ago

All Time
  • Total Commits: 11
  • Total Committers: 1
  • Avg Commits per committer: 11.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 11
  • Committers: 1
  • Avg Commits per committer: 11.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Grzegorz Bokota b****b@g****m 11

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 1
  • Total pull requests: 9
  • Average time to close issues: N/A
  • Average time to close pull requests: about 8 hours
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.22
  • Merged pull requests: 7
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 7
  • Average time to close issues: N/A
  • Average time to close pull requests: about 11 hours
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.29
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • Czaki (1)
Pull Request Authors
  • Czaki (9)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • pypi 17 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 0
    (may contain duplicates)
  • Total versions: 7
  • Total maintainers: 1
pypi.org: partseg-smfish

PartSeg and napari plugin for smfish data

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 17 Last month
Rankings
Dependent packages count: 6.6%
Average: 18.6%
Dependent repos count: 30.6%
Maintainers (1)
massad
Last synced: 11 months ago
conda-forge.org: partseg-smfish
  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Dependent packages count: 51.2%
Average: 52.2%
Forks count: 61.1%
Stargazers count: 62.4%
Last synced: 11 months ago

Dependencies

.github/workflows/test_and_deploy.yml actions
  • GabrielBB/xvfb-action v1 composite
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • codecov/codecov-action v2 composite
  • tlambert03/setup-qt-libs v1 composite
pyproject.toml pypi