https://github.com/4ment/torchtree-scipy
Package providing extra functionalities from SciPy
Science Score: 13.0%
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Low similarity (11.4%) to scientific vocabulary
Keywords
Repository
Package providing extra functionalities from SciPy
Basic Info
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- Stars: 1
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 1
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Metadata Files
README.md
torchtree-scipy
About torchtree-scypi
torchtree-scipy is a package that enhances the functionalities of torchtree by incorporating additional features from SciPy.
Dependencies
Installation
Installing from source
bash
git clone https://github.com/4ment/torchtree-scipy
pip install torchtree-scipy/
Installing latest stable version
You can install torchtree-scipy and its dependencies from PyPI with:
pip install torchtree-scipy
Check install
If the installation was succesfull, this command should print the version of the torchtree_scipy library
bash
python -c "import torchtree_scipy;print(torchtree_scipy.__version__)"
Command line arguments
The torchtree-scipy plugin adds these arguments to the torchtree CLI:
bash
torchtree-cli advi --help
...
--scipy_gamma_site use the GammaSiteModel implemented with SciPy
Features
Discrete gamma site model
This model implements the discretized gamma distribution to model rate heterogeity accross sites. The gradient of this model with respect to the shape parameter is calculated numerically using finite differences.
The easiest way to use this model is to use the argument --scipy_gamma_site. This sets the type of the site model to torchtree_scipy.GammaSiteModel in the JSON configuration file. The default step size is epsilon=1.0e-6 but it can be changed manually in the JSON file.
License
Distributed under the GPLv3 License. See LICENSE for more information.
Acknowledgements
torchtree-scipy makes use of the following libraries and tools, which are under their own respective licenses:
Owner
- Name: Mathieu Fourment
- Login: 4ment
- Kind: user
- Location: Australia
- Company: University of Technology Sydney
- Repositories: 58
- Profile: https://github.com/4ment
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- Total packages: 1
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Total downloads:
- pypi 18 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 1
- Total maintainers: 1
pypi.org: torchtree-scipy
Plugin for using scipy in torchtree
- Homepage: https://github.com/4ment/torchtree-scipy
- Documentation: https://torchtree-scipy.readthedocs.io/
- License: GPL3
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Latest release: 1.0.0
published over 2 years ago
Rankings
Maintainers (1)
Dependencies
- actions/checkout v3 composite
- actions/setup-python v3 composite