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https://github.com/4ment/torchtree-tensorflow

https://github.com/4ment/torchtree-tensorflow

Science Score: 13.0%

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    CITATION.cff file
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    Low similarity (7.3%) to scientific vocabulary

Keywords

phylogenetics pytorch tensorflow torchtree
Last synced: 6 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: 4ment
  • License: gpl-3.0
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 22.5 KB
Statistics
  • Stars: 1
  • Watchers: 3
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
phylogenetics pytorch tensorflow torchtree
Created almost 4 years ago · Last pushed over 2 years ago
Metadata Files
Readme License

README.md

torchtree-tensorflow

Testing

torchtree-tensorflow is a package that enhances the functionalities of torchtree by incorporating additional features from tensorflow.

Dependencies

Installation

Installing from source

bash git clone https://github.com/4ment/torchtree-scipy pip install torchtree-scipy/

Features

Discrete gamma site model

This model implements the discretized gamma distribution to model rate heterogeity accross sites. The gradient of this model with respect to the shape parameter is calculated with automatic differentiation. In order to use this model the type of the site model must be changed to torchtree_scipy.GammaSiteModel in the JSON configuration file.

License

Distributed under the GPLv3 License. See LICENSE for more information.

Acknowledgements

torchtree-scipy makes use of the following libraries and tools, which are under their own respective licenses:

Owner

  • Name: Mathieu Fourment
  • Login: 4ment
  • Kind: user
  • Location: Australia
  • Company: University of Technology Sydney

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Last synced: 9 months ago

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Dependencies

.github/workflows/python-package.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
pyproject.toml pypi
setup.py pypi