https://github.com/4ment/seqotron

Alignment editor for Mac OS X

https://github.com/4ment/seqotron

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
  • .zenodo.json file
  • DOI references
    Found 3 DOI reference(s) in README
  • Academic publication links
  • Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (4.8%) to scientific vocabulary

Keywords

macosx phylogenetics sequence-viewer tree-viewer
Last synced: 9 months ago · JSON representation

Repository

Alignment editor for Mac OS X

Basic Info
  • Host: GitHub
  • Owner: 4ment
  • License: gpl-3.0
  • Language: Objective-C
  • Default Branch: master
  • Homepage:
  • Size: 656 KB
Statistics
  • Stars: 29
  • Watchers: 6
  • Forks: 4
  • Open Issues: 3
  • Releases: 0
Topics
macosx phylogenetics sequence-viewer tree-viewer
Created about 11 years ago · Last pushed almost 9 years ago
Metadata Files
Readme License

README.md

seqotron

Build Status

Sequence viewer

Seqotron is a user-friendly sequence editor. It is written in Objective-C/Cocoa and runs on Mac OS X.

Features

  • Visualisation and manual editing of nucleotide and amino acid sequences.
  • Alignment through MUSCLE and MAFFT.
  • Phylogenetic tree inference with Physher.
  • Open source under GNU GPL.

Getting started

Download Seqotron binaries

A quick overview of Seqotron

User manual [PDF]

Reference

Mathieu Fourment and Edward C. Holmes. Seqotron: a user-friendly sequence editor for Mac OS X. BMC Res Notes, 2016, 17;9(1):106

Owner

  • Name: Mathieu Fourment
  • Login: 4ment
  • Kind: user
  • Location: Australia
  • Company: University of Technology Sydney

GitHub Events

Total
Last Year

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 17
  • Total Committers: 2
  • Avg Commits per committer: 8.5
  • Development Distribution Score (DDS): 0.471
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Mathieu Fourment m****t@g****m 9
Mathieu Fourment m****t@s****u 8
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 5
  • Total pull requests: 1
  • Average time to close issues: 4 months
  • Average time to close pull requests: about 5 hours
  • Total issue authors: 4
  • Total pull request authors: 1
  • Average comments per issue: 6.6
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • liamxg (2)
  • ehj000 (1)
  • WJAugustyn (1)
  • sanyalab (1)
Pull Request Authors
  • codacy-badger (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels