https://github.com/4ment/phylojax - v1.0.1

New features - Substitution model: GTR - Allow initialization of node heights from input tree file - Improved benchmark (e.g. analytic gradient)

Note The versions of jax and jaxlib are pinned. - jax==0.2.24 - jaxlib==0.3.7

- Python
Published by 4ment about 3 years ago

https://github.com/4ment/phylojax - v1.0.0

Features

• Substitution model: JC69
• Time tree
• Constant size coalescent prior
• Automatic differentiation variational inference (ADVI)
• Maximum a posteriori (MAP)

Note

Compatible with jax 0.2.20. jax.api and jax.partial are removed in >0.0.21

- Python
Published by 4ment over 4 years ago