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Open Source Science

https://github.com/4ment/beaglepy

hms cutie beagle pie

https://github.com/4ment/beaglepy

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.4%) to scientific vocabulary

Keywords

beagle phylogenetics pybind11 python
Last synced: 6 months ago · JSON representation

Repository

hms cutie beagle pie

Basic Info
  • Host: GitHub
  • Owner: 4ment
  • License: gpl-3.0
  • Language: C++
  • Default Branch: master
  • Homepage:
  • Size: 78.1 KB
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Topics
beagle phylogenetics pybind11 python
Created over 5 years ago · Last pushed almost 3 years ago
Metadata Files
Readme License

README.md

beaglepy: python binding for BEAGLE

Testing (Linux) License

beaglepy is a Python package for calculating phylogenetic likelihoods of sequence evolution. Under the hood, beaglepy utilizes the high performance library BEAGLE and can therefore make use of highly-parallel processors such as those in graphics cards (GPUs) found in many PCs.

Install

beaglepy can be installed on Linux or Mac (potentially on Windows), with the following prerequisites:

Owner

  • Name: Mathieu Fourment
  • Login: 4ment
  • Kind: user
  • Location: Australia
  • Company: University of Technology Sydney

GitHub Events

Total
Last Year

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 19
  • Total Committers: 1
  • Avg Commits per committer: 19.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Mathieu Fourment m****t@g****m 19

Issues and Pull Requests

Last synced: 9 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 14 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 2
  • Total maintainers: 1
pypi.org: beaglepy

Python binding for beagle

  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 14 Last month
Rankings
Dependent packages count: 10.1%
Dependent repos count: 21.6%
Forks count: 22.7%
Average: 25.7%
Stargazers count: 31.9%
Downloads: 42.4%
Maintainers (1)
4ment
Last synced: 6 months ago

Dependencies

.github/workflows/test_linux_with_conda.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
Dockerfile docker
  • debian buster build
pyproject.toml pypi
setup.py pypi