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Open Source Science

https://github.com/rpidanny/darwin

An elegant CLI wizard enhancing biotech research efficiency, with adaptable features for other domains, albeit with minor constraints.

https://github.com/rpidanny/darwin

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.5%) to scientific vocabulary

Keywords

bioinformatics biotech biotechnology darwin genomics google-scholar research research-paper
Last synced: 6 months ago · JSON representation

Repository

An elegant CLI wizard enhancing biotech research efficiency, with adaptable features for other domains, albeit with minor constraints.

Basic Info
  • Host: GitHub
  • Owner: rpidanny
  • License: mit
  • Language: TypeScript
  • Default Branch: main
  • Homepage:
  • Size: 4.22 MB
Statistics
  • Stars: 3
  • Watchers: 1
  • Forks: 0
  • Open Issues: 6
  • Releases: 66
Topics
bioinformatics biotech biotechnology darwin genomics google-scholar research research-paper
Created almost 2 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog License

README.md

alt text

Darwin

Darwin is an elegant and powerful command-line interface (CLI) utility designed to streamline your research efforts. While it shines brightest in the field of biotechnology, its versatile tools can support research across various domains, albeit with some limitations.

Version Downloads/week

Usage

Prerequisites

sh-session $ npm install -g @rpidanny/darwin $ darwin COMMAND running command... $ darwin (--version) @rpidanny/darwin/1.35.1 linux-x64 node-v20.15.0 $ darwin --help [COMMAND] USAGE $ darwin COMMAND ... <!-- usagestop -->

After installing, configure Darwin with darwin config set.

Command Topics

FAQ

Frequently Asked Questions

Use Cases

Issues and Feature Requests

If you encounter any issues or have a feature request, please open an issue in the repository. We'd love to hear from you and improve Darwin together!

Contribution

We welcome contributions to Darwin! To contribute, fork the repository, create a new branch for your feature, make your changes, and submit a pull request. For more details, see our CONTRIBUTING guidelines.

License

Darwin is released under the MIT License. See the LICENSE file for more details.

Owner

  • Name: Abhishek Maharjan
  • Login: rpidanny
  • Kind: user

GitHub Events

Total
Last Year

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 8
  • Total pull requests: 228
  • Average time to close issues: 5 days
  • Average time to close pull requests: 3 days
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 1.0
  • Average comments per pull request: 1.51
  • Merged pull requests: 154
  • Bot issues: 0
  • Bot pull requests: 124
Past Year
  • Issues: 2
  • Pull requests: 167
  • Average time to close issues: 5 days
  • Average time to close pull requests: 3 days
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 1.0
  • Average comments per pull request: 1.51
  • Merged pull requests: 111
  • Bot issues: 0
  • Bot pull requests: 93
View more stats
Top Authors
Issue Authors
  • rpidanny (4)
  • dependabot[bot] (1)
Pull Request Authors
  • dependabot[bot] (145)
  • rpidanny (69)
Top Labels
Issue Labels
released (1)
Pull Request Labels
released (76)

Packages

  • Total packages: 1
  • Total downloads:
    • npm 64 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 66
  • Total maintainers: 1
npmjs.org: @rpidanny/darwin

An elegant CLI wizard enhancing biotech research efficiency, with adaptable features for other domains, albeit with minor constraints.

  • Versions: 66
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 64 Last month
Rankings
Dependent repos count: 28.1%
Average: 34.5%
Dependent packages count: 40.9%
Maintainers (1)
mabhishek
Last synced: 6 months ago

Dependencies

.github/workflows/ci.yml actions
  • actions/checkout v3 composite
  • actions/setup-node v3 composite
.github/workflows/package.yml actions
  • actions/checkout v3 composite
  • actions/setup-node v3 composite
  • svenstaro/upload-release-action v2 composite
.github/workflows/release.yml actions
  • actions/checkout v3 composite
  • actions/setup-node v3 composite
package-lock.json npm
  • 1490 dependencies
package.json npm
  • @commitlint/cli ^19.3.0 development
  • @commitlint/config-conventional ^19.2.2 development
  • @oclif/prettier-config ^0.2.1 development
  • @oclif/test ^4 development
  • @rpidanny/eslint-config-typescript ^1.4.1 development
  • @semantic-release/changelog ^6.0.3 development
  • @semantic-release/commit-analyzer ^13.0.0 development
  • @semantic-release/git ^10.0.1 development
  • @semantic-release/github ^10.0.6 development
  • @semantic-release/npm ^12.0.1 development
  • @semantic-release/release-notes-generator ^14.0.1 development
  • @types/csv-write-stream ^2.0.3 development
  • @types/figlet ^1.5.8 development
  • @types/fs-extra ^11.0.4 development
  • @types/inquirer ^9.0.7 development
  • @types/jest ^29.5.12 development
  • @types/marked-terminal ^6.1.1 development
  • @types/node ^18 development
  • @types/request ^2.48.12 development
  • @types/tmp ^0.2.6 development
  • commitlint ^19.3.0 development
  • conventional-changelog-conventionalcommits ^8.0.0 development
  • doctoc ^2.2.1 development
  • eslint ^8 development
  • eslint-config-oclif ^5 development
  • eslint-config-oclif-typescript ^3 development
  • eslint-config-prettier ^9 development
  • husky ^9.0.11 development
  • jest ^29.7.0 development
  • jest-mock-extended ^3.0.7 development
  • lint-staged ^15.2.7 development
  • mock-stdin ^1.0.0 development
  • nock ^13.5.4 development
  • oclif ^4 development
  • semantic-release ^24.0.0 development
  • shx ^0.3.3 development
  • tmp ^0.2.3 development
  • ts-jest ^29.1.5 development
  • ts-node ^10 development
  • typescript ^5 development
  • @json2csv/node ^7.0.6
  • @json2csv/transforms ^7.0.6
  • @langchain/community ^0.2.17
  • @langchain/openai ^0.2.1
  • @oclif/core ^3
  • @oclif/plugin-help ^6
  • @oclif/plugin-not-found ^3.2.1
  • @rpidanny/google-scholar ^3.2.0
  • @rpidanny/odysseus ^2.6.0
  • @rpidanny/quill ^1.6.0
  • @rpidanny/quill-hooks ^1.0.2
  • bottleneck ^2.19.5
  • cli-progress ^3.12.0
  • csvtojson ^2.0.10
  • figlet ^1.7.0
  • fs-extra ^11.2.0
  • got ^11.8.6
  • inquirer ^8.2.6
  • json-2-csv ^5.5.1
  • langchain ^0.2.8
  • marked ^11.2.0
  • marked-terminal ^7.1.0
  • mixpanel ^0.18.0
  • moment ^2.30.1
  • ora ^5.4.1
  • p-retry ^6.2.0
  • pdf-text-reader ^5.1.0
  • playwright ^1.45.1
  • pretty-ms ^9.0.0
  • reflect-metadata ^0.2.2
  • semver ^7.6.2
  • tough-cookie ^4.1.4
  • typedi ^0.10.0
test/fixtures/app/package.json npm