Science Score: 49.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 1 DOI reference(s) in README -
✓Academic publication links
Links to: biorxiv.org -
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (5.9%) to scientific vocabulary
Repository
Command line tool for the CAS project
Basic Info
- Host: GitHub
- Owner: barakcohenlab
- License: mit
- Language: Jupyter Notebook
- Default Branch: main
- Size: 114 MB
Statistics
- Stars: 3
- Watchers: 1
- Forks: 1
- Open Issues: 0
- Releases: 3
Metadata Files
README.md
castools
Command line tools and analysis code for the SARGENT project.
Authors
Clarice, Avi and Siqi from the Barak Cohen Lab
Code structure
The code has been organized into a series of folders described below.
figures
This folder contains code and data for making the figures in the pre-print.
analysis-code
This folder contains notebooks and scripts used for analysing the data from a SARGENT run. Files related to classifying genomic locations into high-MIN vs low-MIN and high-mean vs low-MIN are included in the classifier/ subfolder.
castools
This folder contains a command-line tool for processing the raw data from a SARGENT experiment.
Citation
The experimental methods and analysis results are described in this preprint: https://www.biorxiv.org/content/10.1101/2022.08.31.506082v1
Owner
- Name: BarakCohenLab
- Login: barakcohenlab
- Kind: organization
- Repositories: 3
- Profile: https://github.com/barakcohenlab