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A Python module to combine $p$ values arising from discrete tests.

A Python module to combine $p$ values arising from discrete tests. - Published in JOSS (2024)

https://github.com/bpsb/combine-p-values-discrete

Science Score: 93.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 14 DOI reference(s) in README and JOSS metadata
  • ✓
    Academic publication links
    Links to: joss.theoj.org, zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software
Last synced: 6 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: BPSB
  • License: bsd-3-clause
  • Language: Python
  • Default Branch: master
  • Size: 188 KB
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 8
Created about 4 years ago · Last pushed 10 months ago
Metadata Files
Readme License Codemeta

README.rst 

A Python module for combining *p* values of discrete tests.

* Read the `paper `_ for a short overview; read the `documentation `_ for more.
* Install with:

  * ``pip install combine-pvalues-discrete``
  * ``pip3 install git+git://github.com/BPSB/combine-p-values-discrete``
  * or similar.

* Install requirements for testing with ``pip install ".[test]"`` (or similar). Run the test with ``pytest`` (or similar) in the source directory. Run ``pytest -m "not slow"`` to exclude some particularly time-consuming tests.
* `Issue Tracker `_ – Please use this if you need any help with this module, in particular if you are facing any bugs or require features (in particular support for tests).
* Contributions are welcome. Feel free to discuss them on the issue tracker or just file a pull request.
* Cite the `paper `_ to give credit or shift blame. If you want to cite specific versions, you can find them on `Zenodo `_.

.. image:: https://joss.theoj.org/papers/10.21105/joss.06096/status.svg
  :target: https://doi.org/10.21105/joss.06096

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.10684537.svg
  :target: https://doi.org/10.5281/zenodo.10684537

Owner

  • Name: BPSB
  • Login: BPSB
  • Kind: organization

JOSS Publication

A Python module to combine $p$ values arising from discrete tests.
Published
February 29, 2024
DOI
Volume 9, Issue 94, Page 6096
Authors
Gerrit Ansmann ORCID
Institute for Biological Physics, University of Cologne, Germany
Editor
Vissarion Fisikopoulos ORCID
Tags
statistics hypothesis tests
View PDF Review Thread Software Archive

GitHub Events

Total
  • Create event: 4
  • Issues event: 1
  • Release event: 2
  • Watch event: 1
  • Delete event: 2
  • Issue comment event: 4
  • Push event: 12
Last Year
  • Create event: 4
  • Issues event: 1
  • Release event: 2
  • Watch event: 1
  • Delete event: 2
  • Issue comment event: 4
  • Push event: 12

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 224
  • Total Committers: 1
  • Avg Commits per committer: 224.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 16
  • Committers: 1
  • Avg Commits per committer: 16.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Wrzlprmft W****t 224

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 4
  • Total pull requests: 0
  • Average time to close issues: 20 days
  • Average time to close pull requests: N/A
  • Total issue authors: 3
  • Total pull request authors: 0
  • Average comments per issue: 4.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: 7 days
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 5.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • steppi (2)
  • mdhaber (1)
  • Christopher22 (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 59 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 11
  • Total maintainers: 1
pypi.org: combine-pvalues-discrete

A Python toolbox for combining p values from tests with a discrete statistics

  • Versions: 11
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 59 Last month
Rankings
Dependent packages count: 10.0%
Dependent repos count: 21.8%
Average: 24.6%
Downloads: 42.1%
Maintainers (1)
Wrzlprmft
Last synced: 6 months ago