https://github.com/silx-kit/silx

silx toolkit

Science Score: 59.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 3 DOI reference(s) in README
✓
Academic publication links
Links to: zenodo.org
✓
Committers with academic emails
4 of 67 committers (6.0%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (16.6%) to scientific vocabulary

Keywords

beamline cython experiments gui hdf5 plotting python-library python3 qt science synchrotron

Keywords from Contributors

diffraction multidimensional-arrays amd heterogeneous-parallel-programming nvidia opencl parallel-algorithm parallel-computing prefix-sum pyopencl

Last synced: 5 months ago · JSON representation

Repository

silx toolkit

Basic Info

Host: GitHub
Owner: silx-kit
License: mit
Language: Python
Default Branch: main
Homepage: http://www.silx.org/doc/silx/latest/
Size: 52 MB

Statistics

Stars: 149
Watchers: 10
Forks: 79
Open Issues: 309
Releases: 41

Topics

beamline cython experiments gui hdf5 plotting python-library python3 qt science synchrotron

Created over 10 years ago · Last pushed 6 months ago

Metadata Files

Readme Changelog Contributing License Copyright

README.rst

silx toolkit
============

.. |silxView| image:: http://www.silx.org/doc/silx/img/silx-view-v1-0.gif
   :height: 480px

The purpose of the *silx* project is to provide a collection of Python packages to support the
development of data assessment, reduction and analysis applications at synchrotron
radiation facilities.
*silx* aims to provide reading/writing tools for different file formats, data reduction routines
and a set of Qt widgets to browse and visualise data.

The current version features:

* Support of `HDF5 `_,
  `SPEC `_ and
  `FabIO `_
  images file formats.
* OpenCL-based data processing: image alignment (SIFT),
  image processing (median filter, histogram),
  filtered backprojection for tomography,
  convolution
* Data reduction: histogramming, fitting, median filter
* A set of Qt widgets, including:

  * 1D and 2D visualization widgets with a set of associated tools using multiple backends (matplotlib or OpenGL)
  * OpenGL-based widgets to visualize data in 3D (scalar field with isosurface and cut plane, scatter plot)
  * a unified browser for HDF5, SPEC and image file formats supporting inspection and
    visualization of n-dimensional datasets.

* a set of applications:

  * a unified viewer (*silx view filename*) for HDF5, SPEC and image file formats

    |silxView|

  * a unified converter to HDF5 format (*silx convert filename*)


Installation
------------

To install silx (and all its dependencies), run:

.. code-block:: bash

    pip install silx[full]

To install silx with a minimal set of dependencies, run:

.. code-block:: bash

    pip install silx

Or using Anaconda on Linux and MacOS:

.. code-block:: bash

    conda install silx -c conda-forge

Unofficial packages for different distributions are available:

- Unofficial Debian10 and Ubuntu20.04 packages are available at http://www.silx.org/pub/linux-repo/
- CentOS 7 rpm packages are provided by Max IV at: http://pubrepo.maxiv.lu.se/rpm/el7/x86_64/
- Fedora 23 rpm packages are provided by Max IV at http://pubrepo.maxiv.lu.se/rpm/fc23/x86_64/
- Arch Linux (AUR) packages are also available: https://aur.archlinux.org/packages/python-silx

`Detailed installation instructions `_
are available in the documentation.

Documentation
-------------

The documentation of `latest release `_ and
the documentation of `the nightly build `_ are
available at http://www.silx.org/doc/silx/

Testing
-------

*silx* features a comprehensive test-suite used in continuous integration for
all major operating systems:

|Github Actions Status|

Please refer to the `documentation on testing `_
for details.

Examples
--------

Some examples of sample code using silx are provided with the
`silx documentation `_.


License
-------

The source code of *silx* is licensed under the MIT license.
See the `LICENSE `_ and
`copyright `_ files for details.

Citation
--------

*silx* releases can be cited via their DOI on Zenodo: |zenodo DOI|

.. |Github Actions Status| image:: https://github.com/silx-kit/silx/workflows/CI/badge.svg
   :target: https://github.com/silx-kit/silx/actions
.. |zenodo DOI| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.591709.svg
   :target: https://doi.org/10.5281/zenodo.591709

Owner

Name: Organization managing the silx project
Login: silx-kit
Kind: organization
Email: silx@esrf.fr

Repositories: 16
Profile: https://github.com/silx-kit

GitHub Events

Total

Create event: 49
Release event: 5
Issues event: 123
Watch event: 21
Delete event: 34
Issue comment event: 232
Push event: 249
Pull request review event: 215
Pull request review comment event: 247
Pull request event: 184
Fork event: 6

Last Year

Create event: 49
Release event: 5
Issues event: 123
Watch event: 21
Delete event: 34
Issue comment event: 232
Push event: 249
Pull request review event: 215
Pull request review comment event: 247
Pull request event: 184
Fork event: 6

Committers

Last synced: 11 months ago

All Time

Total Commits: 11,087
Total Committers: 67
Avg Commits per committer: 165.478
Development Distribution Score (DDS): 0.604

Past Year

Commits: 270
Committers: 16
Avg Commits per committer: 16.875
Development Distribution Score (DDS): 0.433

Top Committers

Name	Email	Commits
Thomas VINCENT	t**t@e**r	4,389
Valentin Valls	v**s@e**r	2,625
Pierre	p**l@e**r	1,628
Payno	h**o@e**r	1,015
Jerome Kieffer	j**r@e**r	441
Pierre Paleo	p**o@e**r	195
V. Armando Solé	s**e@e**r	174
Damien Naudet	n**t@e**r	101
payno	p**o@l**r	100
woutdenolf	w**f@u**t	71
Pierre Paleo	p**o@g**r	45
Rebelo Alexis	r**s@g**m	37
Edgar Gutierrez Fernandez	e**z@e**r	33
Damien Naudet	n**t@l**r	22
Guillaume Communie	g**e@g**m	20
PiRK	p**n@g**m	19
Pepijn Kenter	p**r@s**l	17
Julia Garriga Ferrer	j**a@e**r	13
Marius Retegan	m**n@g**m	12
Loic Huder	l**r@e**r	11
T. Fuchs	f**s@p**e	9
Claudio Ferrero	c**o@e**r	8
Hans Fangohr	f**r@s**k	7
Mauro Rovezzi	m**i@g**m	6
Felix Engelmann	f**n@m**e	5
Pepijn Kenter	t**n@g**m	5
UUSim	U****m	4
lroussel	l**l@e**r	4
Vicente Armando Sole	s**e@t**r	3
Clemens Schmid	c**h@t**o	3
and 37 more...

Committer Domains (Top 20 + Academic)

esrf.fr: 22 synchrotron-soleil.fr: 2 hereon.de: 1 linazimov.esrf.fr: 1 users.sf.net: 1 gringalet.fr: 1 linnaudet.esrf.fr: 1 sron.nl: 1 physik.uni-kiel.de: 1 soton.ac.uk: 1 maxiv.lu.se: 1 titan.esrf.fr: 1 tuta.io: 1 bnl.gov: 1 gmail.comç: 1 email.cz: 1 scisoft12.esrf.fr: 1 fz-juelich.de: 1 antartica.fournet.lan: 1 scisoft.esrf.fr: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 318
Total pull requests: 542
Average time to close issues: about 1 year
Average time to close pull requests: 23 days
Total issue authors: 37
Total pull request authors: 27
Average comments per issue: 1.67
Average comments per pull request: 1.18
Merged pull requests: 434
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 74
Pull requests: 195
Average time to close issues: about 1 month
Average time to close pull requests: 12 days
Issue authors: 14
Pull request authors: 14
Average comments per issue: 0.74
Average comments per pull request: 0.83
Merged pull requests: 137
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

vallsv (95)
t20100 (68)
payno (38)
kif (28)
woutdenolf (20)
picca (12)
vasole (8)
kklmn (7)
pierrepaleo (4)
EdgarGF93 (4)
lesaintjerome (3)
abmajith (2)
CaptainNemoz (2)
loichuder (2)
malte-storm (2)

Pull Request Authors

t20100 (262)
vallsv (59)
payno (53)
woutdenolf (27)
loichuder (25)
kif (22)
axelboc (14)
RebeloAlexis (14)
pierrepaleo (10)
vasole (9)
EdgarGF93 (8)
cchndl (4)
malte-storm (4)
mjdiff (4)
tj-eldridge (4)

Top Labels

Issue Labels

enhancement (44) bug (36) question (14) difficulty:Intermediate (11) difficulty:Easy (10) improvement needed (6) difficulty:Expert (4) doc (3) quality (2) duplicate (2)

Pull Request Labels

ready to merge (45) enhancement (15) work in progress (5) difficulty:Easy (4) bug (4) question (3) doc (1) help wanted (1)

Packages

Total packages: 3
Total downloads:
- pypi 49,959 last-month
Total docker downloads: 19

Total dependent packages: 44
(may contain duplicates)
Total dependent repositories: 74
(may contain duplicates)
Total versions: 75
Total maintainers: 9

pypi.org: silx

Software library for X-ray data analysis

Homepage: http://www.silx.org/
Documentation: https://silx.readthedocs.io/
License: MIT
Latest release: 2.2.2
published 11 months ago

Versions: 44
Dependent Packages: 37
Dependent Repositories: 71
Downloads: 49,959 Last month
Docker Downloads: 19

Rankings

Dependent packages count: 0.4%

Dependent repos count: 1.8%

Average: 1.9%

Downloads: 2.3%

Docker downloads count: 3.1%

Maintainers (9)

payno woutdenolf pierrepaleo vasole t20100 kieffer valentin.valls PiRK poautran

Last synced: 6 months ago

conda-forge.org: silx

The silx project aims at providing a collection of Python packages to support the development of data assessment, reduction and analysis applications at synchrotron radiation facilities. It aims at providing reading/writing different file formats, data reduction routines and a set of Qt widgets to browse and visualize data.

Homepage: https://github.com/silx-kit/silx
License: MIT
Latest release: 1.1.0
published over 3 years ago

Versions: 20
Dependent Packages: 5
Dependent Repositories: 2

Rankings

Dependent packages count: 10.4%

Dependent repos count: 20.3%

Average: 22.0%

Forks count: 23.7%

Stargazers count: 33.4%

Last synced: 6 months ago

conda-forge.org: silx-base

Homepage: https://github.com/silx-kit/silx
License: MIT
Latest release: 1.1.0
published over 3 years ago

Versions: 11
Dependent Packages: 2
Dependent Repositories: 1

Rankings

Dependent packages count: 19.6%

Forks count: 23.7%

Dependent repos count: 24.4%

Average: 25.3%

Stargazers count: 33.4%

Last synced: 6 months ago

Dependencies

ci/requirements-pinned.txt pypi

pybind11 *
pyopencl ==2020.3.1

requirements-dev.txt pypi

Sphinx * development
hdf5plugin * development
nbsphinx * development
pandoc * development
pillow * development
pytest * development
pytest-cov * development
pytest-xvfb * development
wheel * development

requirements.txt pypi

Cython >=0.21.1
Mako *
Pillow *
PyOpenGL *
PyQt5 *
fabio >=0.9
h5py *
matplotlib >=1.2.0
numpy >=1.12
pyopencl *
python-dateutil *
qtconsole *
scipy *
setuptools <60.0.0

setup.py pypi

fabio >=0.9
for *
h5py *
numpy *
setuptools *

.github/workflows/ci.yml actions

actions/checkout v2 composite
actions/setup-python v4 composite

pyproject.toml pypi

.github/workflows/release.yml actions

actions/checkout v4 composite
actions/download-artifact v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
docker/setup-qemu-action v3 composite
pypa/cibuildwheel v2.16.5 composite
pypa/gh-action-pypi-publish release/v1 composite