https://github.com/shitohana/BSXplorer - v1.1.0

What's Changed

Major changes

• Added new classes for Unified reading of methylation reports (UniversalReader, UniversalReplicatesReader). Now any supported report type can be converted into another.
• Added support for processing BAM files (BAMReader). BAM files can be either converted to methylation report (faster than with native methods), or methylation statistics, such as methylation entropy, epipolymorphism or PDR can be calculated.
• Added method for aligning one set of regions along another (e.g. DMR along genes) – Enrichment. Regions can not only be aligned, but the coverage of the metagene by DMRs can be visualized.

Minor improvements

• Any plot data now can be retrieved by corresponding method.
• Fixes to the plotting API.
• Fixes to Category report.
• Added console command for processing BAM files.

- Python
Published by shitohana over 1 year ago

https://github.com/shitohana/BSXplorer - v1.0.0rc5

What's Changed

• Plotly by @shitohana in https://github.com/shitohana/BSXplorer/pull/8
• Main pull after major upd by @shitohana in https://github.com/shitohana/BSXplorer/pull/9

Full Changelog: https://github.com/shitohana/BSXplorer/compare/v1.3.2...v1.0.0rc5

- Python
Published by shitohana about 2 years ago

https://github.com/shitohana/BSXplorer - v.1.0.0a0

What's Changed

• Plotly by @shitohana in https://github.com/shitohana/BSXplorer/pull/8
• Main pull after major upd by @shitohana in https://github.com/shitohana/BSXplorer/pull/9
• test commit by @shitohana in https://github.com/shitohana/BSXplorer/pull/10

Full Changelog: https://github.com/shitohana/BSXplorer/compare/v1.3.2...v.1.0.0a0

- Python
Published by shitohana about 2 years ago

https://github.com/shitohana/BSXplorer - Initial release

BismarkPlot: analytical framework for BS-seq data comparison and visualization.

- Python
Published by shitohana over 2 years ago