Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/codingfisch/niftiview-app

Standalone app for viewing volumetric images 🧠 based on Python

https://github.com/codingfisch/niftiview-app

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.7%) to scientific vocabulary

Keywords

brain-imaging brain-mri dicom fmri imaging medical-imaging neuroimaging nifti-format python viewer
Last synced: 5 months ago · JSON representation

Repository

Standalone app for viewing volumetric images 🧠 based on Python

Basic Info
  • Host: GitHub
  • Owner: codingfisch
  • License: mit
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 1.61 MB
Statistics
  • Stars: 4
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Topics
brain-imaging brain-mri dicom fmri imaging medical-imaging neuroimaging nifti-format python viewer
Created about 1 year ago · Last pushed about 1 year ago
Metadata Files
Readme License

README.md

niftiview_logo_transparent_clean_small

NiftiView is a medical 3D image viewer made for amateurs 👨, clinicians 👩‍⚕️, scientists 👨‍🔬 and coders 👩‍💻

Highlight features for each user group are

  • 👨 Drag&Drop to easily view multiple 3D images in a beautiful layout and save as a GIF
  • 👩‍⚕️ Shortcuts to quickly set up optimal contrasts by intensity windowing and histogram equalization
  • 👨‍🔬 Custom image layers and overlays (crosshair, colorbar...) to create publication-ready figures
  • 👩‍💻 Usable via Python and Command Line Interface (take a look at the underlying Python package)

niftiview

Besides these highlights, NiftiView also covers the basics - 💾 Supports NIfTI .nii/.nii.gz, NumPy .npy, DICOM and some older 3D image formats - 🖼️ High image quality via Lanczos interpolation - 📥 Easy installation for Windows and Linux: Download, unzip, double-click 🏁

Learn how to use NiftiView via the YouTube-Tutorial 💡

Installation 🛠️

Windows 🪟 or Linux 🐧

Download the app here, unzip the downloaded file and double-click either - NiftiView.exe (+ ignore potential virus alert, if you are using Windows) - NiftiView.bin (+ previously run chmod +x NiftiView.bin in a terminal, if you are using Linux)

to run NiftiView 🧠 If you like it, check out this short manual to finalize the installation 🛠️

The Python way 🐍

Users of macOS 🍏 and/or Pythonistas just install it in the terminal via bash pip install niftiview-app and run it via bash niftiview-app Some extra steps to make NiftiView feel like a macOS app are provided here 🛠️

Bugfixes 🐛

  • If the app does not start, missing packages can be the issue. To fix that:
    • On Linux: Run sudo apt install libcairo2-dev pkg-config python3-dev
    • On macOS: Run brew install cairo pkg-config tcl-tk python-tk
  • If the app looks grainy in a conda env, run conda install -c conda-forge tk=*=xft_* to fix it

Owner

  • Login: codingfisch
  • Kind: user

GitHub Events

Total
  • Release event: 1
  • Watch event: 2
  • Push event: 4
  • Create event: 3
Last Year
  • Release event: 1
  • Watch event: 2
  • Push event: 4
  • Create event: 3

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 22 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 3
  • Total maintainers: 1
pypi.org: niftiview-app

Standalone app for viewing volumetric images 🧠 based on Python

  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 22 Last month
Rankings
Dependent packages count: 9.8%
Average: 32.5%
Dependent repos count: 55.2%
Maintainers (1)
codingfisch
Last synced: 6 months ago

Dependencies

.github/workflows/build.yml actions
  • Nuitka/Nuitka-Action main composite
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • actions/upload-artifact v3 composite
pyproject.toml pypi
  • dcm2niix *
  • niftiview >=1.0.0
  • python ^3.9
  • sv-ttk *
  • tkinterdnd2 *
  • tkinterdnd2-universal *
requirements.txt pypi
  • dcm2niix *
  • niftiview >=1.0.0
  • numpy ==2.0.2
  • sv-ttk *
  • tkinterdnd2 ==0.3.0
requirements_macos.txt pypi
  • dcm2niix *
  • niftiview >=1.0.0
  • numpy ==2.0.2
  • sv-ttk *
  • tkinterdnd2-universal *