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https://github.com/a-slide/nanopolishcomp

NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files

https://github.com/a-slide/nanopolishcomp

Science Score: 20.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.6%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files

Basic Info
Statistics
  • Stars: 10
  • Watchers: 1
  • Forks: 3
  • Open Issues: 2
  • Releases: 0
Archived
Created almost 8 years ago · Last pushed over 5 years ago
Metadata Files
Readme Contributing Code of conduct

README.md

NanopolishComp

GitHub license Language PyPI version PyPI downloads DOI

!!! NanopolishComp is now archived and not maintained any more !!!

  • Eventalign_collapse was moved to NanoCompore

  • Freq_meth_calculate was moved to pycoQC

NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files

Full documentation is available at https://a-slide.github.io/NanopolishComp/

Authors

  • Adrien Leger - aleg {at} ebi.ac.uk

Owner

  • Name: Adrien Leger
  • Login: a-slide
  • Kind: user
  • Location: Oxford, UK
  • Company: @nanoporetech

Research scientist at Oxford Nanopore Technologies

GitHub Events

Total
Last Year

Committers

Last synced: over 3 years ago

All Time
  • Total Commits: 87
  • Total Committers: 2
  • Avg Commits per committer: 43.5
  • Development Distribution Score (DDS): 0.023
Top Committers
Name Email Commits
a-slide a****g@e****k 85
Adrien Leger a****e@u****m 2
Committer Domains (Top 20 + Academic)
ebi.ac.uk: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 0
  • Total pull requests: 16
  • Average time to close issues: N/A
  • Average time to close pull requests: about 16 hours
  • Total issue authors: 0
  • Total pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.13
  • Merged pull requests: 15
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • a-slide (15)
  • tleonardi (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 7 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 12
  • Total maintainers: 1
pypi.org: nanopolishcomp

NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files

  • Versions: 12
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 7 Last month
Rankings
Dependent packages count: 9.8%
Forks count: 16.9%
Stargazers count: 17.7%
Average: 21.1%
Dependent repos count: 21.8%
Downloads: 39.5%
Maintainers (1)
aleg
Last synced: 11 months ago

Dependencies

setup.py pypi
  • numpy >=1.14.0
  • tqdm >=4.23.4