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localizer_visual_motion

https://github.com/cpp-lln-lab/localizer_visual_motion

Science Score: 67.0%

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    CITATION.cff file
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    .zenodo.json file
    Found .zenodo.json file
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    DOI references
    Found 3 DOI reference(s) in README
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    Academic publication links
    Links to: zenodo.org
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    Scientific vocabulary similarity
    Low similarity (13.3%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: cpp-lln-lab
  • License: mit
  • Language: MATLAB
  • Default Branch: main
  • Size: 560 KB
Statistics
  • Stars: 2
  • Watchers: 3
  • Forks: 9
  • Open Issues: 23
  • Releases: 7
Created over 5 years ago · Last pushed about 1 year ago
Metadata Files
Readme License Citation

README.md

tests and coverage codecov DOI All Contributors

fMRI localizers for visual motion

Running this script will show blocks of motion dots and static dots. Motion blocks will show:

  • dots moving in one of four directions (up-, down-, left-, and right-ward) (MT+ localizer)
  • or dots moving inward and outward in the peripheral of the screen (MT/MST localizer).

Requirements

Make sure that the following toolboxes are installed and added to the matlab / octave path. See the next section on how to install the submodule toolboxes.

For instructions see the following links:

| Requirements | Used version | | --------------------------------------------------------------- | ------------ | | CPP_BIDS (submodule) | 2.1.1 | | CPP_PTB (submodule) | 1.2.1 | | PsychToolBox | >=3.0.14 | | Matlab | >=2017 | | or octave | >=4.? |

Installation

The CPPBIDS and CPPPTB dependencies are already set up as submodules to this repository. You can install it all with git by doing.

bash git clone --recurse-submodules https://github.com/cpp-lln-lab/localizer_visual_motion.git

Set up and running

In the main.m script, you are meant

  • to set your configuration (cfg)
  • call initEnv() to add the relevant folders to the MATLAB path
  • call cfg = checkParameters(cfg) to set up any default configuration you did not set.
  • call visualMotionLocalizer(cfg) to run the localizer.

The minimalist script would thus look like:

```matlab clc; clear;

%% Run MT+ localizer

cfg.design.localizer = 'MT'; initEnv();

cfg = checkParameters(cfg);

% Run visualMotionLocalizer(cfg); ```

Type help checkParameters and see the README in docs to get more information about the configuration options.

Run in debug mode (set cfg.debug.do = true) it does not care about subjID, run n., Eye Tracker...

Contributors ✨

Thanks goes to these wonderful people (emoji key):


Mohamed Rezk
💻 🎨 🤔
marcobarilari
💻 🎨 🤔 🐛 📓 👀 💬 🚇 🚧
Remi Gau
💻 🎨 🤔 🐛 📓 👀 💬 🚇 🚧
CerenB
🐛 📓
iqrashahzad14
💻 🤔

This project follows the all-contributors specification. Contributions of any kind welcome!

Owner

  • Name: Crossmodal Perception and Plasticity laboratory
  • Login: cpp-lln-lab
  • Kind: organization
  • Location: Louvain la Neuve, Belgium

Citation (CITATION.cff) 

cff-version: 1.2.0

title: "CPP localizer visual motion"

version: 0.5.1

abstract: A localizer for visual motion sensitive brain regions using RDK.

message: "If you use this software, please cite it as below."

repository-code: "https://github.com/cpp-lln-lab/localizer_visual_motion.git"

identifiers:
  - description: This is the collection of archived snapshots of all releases
    type: doi
    value: "10.5281/zenodo.4007674"

contact:
  - affiliation: "Université catholique de Louvain"
    email: remi.gau@uclouvain.be
    family-names: Gau
    given-names: Rémi

authors:
  - family-names: "Gau"
    given-names: "Rémi"
    orcid: "https://orcid.org/0000-0002-1535-9767"
    affiliation: "Université catholique de Louvain"

  - family-names: "Barilari"
    given-names: "Marco"
    orcid: "https://orcid.org/0000-0002-3313-3120"
    affiliation: "Université catholique de Louvain"

  - family-names: "Battal"
    given-names: "Ceren"
    orcid: "https://orcid.org/0000-0002-9844-7630"
    affiliation: "Université catholique de Louvain"

  - family-names: "Rezk"
    given-names: "Mohamed"
    orcid: "https://orcid.org/0000-0002-1866-8645"
    affiliation: "Université catholique de Louvain"

  - family-names: "Shahzad"
    given-names: "Iqra"
    orcid: "https://orcid.org/0000-0002-8724-7668"
    affiliation: "Université catholique de Louvain"

license: MIT

keywords:
  - BIDS
  - brain imaging data structure
  - neuroscience
  - MATLAB
  - Octave

GitHub Events

Total
  • Delete event: 1
  • Issue comment event: 2
  • Pull request event: 2
  • Create event: 3
Last Year
  • Delete event: 1
  • Issue comment event: 2
  • Pull request event: 2
  • Create event: 3

Dependencies

requirements.txt pypi
  • miss_hit ==0.9.29
  • pre-commit *
.github/workflows/moxunit.yml actions
  • actions/checkout v3 composite
  • codecov/codecov-action v3 composite
  • joergbrech/moxunit-action v1.2.0 composite