Reducing the efforts to create reproducible analysis code with FieldTrip
Reducing the efforts to create reproducible analysis code with FieldTrip - Published in JOSS (2024)
Science Score: 95.0%
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Found 4 DOI reference(s) in README and JOSS metadata -
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27 of 226 committers (11.9%) from academic institutions -
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Published in Journal of Open Source Software
Keywords
Keywords from Contributors
Scientific Fields
Repository
The MATLAB toolbox for MEG, EEG and iEEG analysis
Basic Info
- Host: GitHub
- Owner: fieldtrip
- License: gpl-3.0
- Language: MATLAB
- Default Branch: master
- Homepage: http://www.fieldtriptoolbox.org
- Size: 981 MB
Statistics
- Stars: 914
- Watchers: 48
- Forks: 746
- Open Issues: 103
- Releases: 16
Topics
Metadata Files
README.md
FieldTrip
FieldTrip is the MATLAB software toolbox for MEG, EEG and iEEG analysis that is being developed at the Donders Institute for Brain, Cognition and Behaviour in Nijmegen, the Netherlands together with collaborating institutes.
The toolbox offers advanced analysis methods of MEG, EEG, and invasive electrophysiological data, such as time-frequency analysis, source reconstruction using dipoles, distributed sources and beamformers and non-parametric statistical testing. It supports the data formats of all major MEG systems (CTF, Neuromag/Elekta/Megin, BTi/4D, Yokogawa/Ricoh, FieldLine) and of most popular EEG systems, and new formats can be added easily. FieldTrip contains high-level functions that you can use to construct your own analysis protocols in MATLAB. Furthermore, it easily allows methods researchers to incorporate new methods for EEG/MEG analysis.
For more information, documentation, and tutorials, please visit https://www.fieldtriptoolbox.org
Installation
To install the FieldTrip toolbox on your computer, you can clone this repository or
download the zip file, unzip it, and add it to your MATLAB path. Subsequently you call
the ft_defaults function, which will add the required subdirectories to the path.
We recommend that you add the addpath(...) and the ft_defaults command to your
startup.m file. See
also https://www.fieldtriptoolbox.org/faq/installation/
Note that you should not use addpath(genpath(...)) and we recommend not to use the
"add with subdirectories" button in the graphical path setup tool, as there are a
number of external toolboxes and backward compatibility directories that you should
not add to your path. If those directories are needed, then ft_defaults and
ft_hastoolbox will take care of them.
Copyright
The FieldTrip software is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. See the file COPYING for more details.
The functions in the FieldTrip toolbox are copyrighted by their respective authors:
- Robert Oostenveld, DCCN, FCDC, SMI, MBFYS
- Jan-Mathijs Schoffelen, DCCN, MPI, CCNi, FCDC
- Pascal Fries, FCDC
- Eric Maris, DCC, FCDC
- Arjen Stolk, DCCN
- Eelke Spaak, DCCN
- Ingrid Nieuwenhuis, DCCN, FCDC
- Jens Schwarzbach, FCDC
- Jorn Horschig, DCCN
- Lilla Magyari, MPI, DCCN
- Markus Siegel, FCDC, UKE
- Martin Vinck, DCCN, SILS
- Ole Jensen, FCDC
- Roemer van der Meij, DCC
- Saskia Haegens, DCCN, FCDC
- Vladimir Litvak, UCL
- and many other contributors
The authors are or were working at a range of academic institutions:
- Copyright (C) 2008-2025, Donders Institute for Brain, Cognition and Behaviour, Radboud University, The Netherlands (DCCN, DCC, DCN)
- Copyright (C) 2014-2025, Karolinska Institute, Stockholm, Sweden (NatMEG)
- Copyright (C) 2012-2018, Max Planck Institute for Psycholinguistics, The Netherlands (MPI)
- Copyright (C) 2008-2017, The Wellcome Trust Centre for Neuroimaging, University College London, UK (UCL)
- Copyright (C) 2010-2013, Swammerdam Institute for Life Sciences, University of Amsterdam (SILS)
- Copyright (C) 2008-2009, Centre for Cognitive Neuroimaging in Glasgow, United Kingdom (CCNi)
- Copyright (C) 2009-2009, Netherlands Institute for Neuroscience (NIN)
- Copyright (C) 2003-2008, F.C. Donders Centre, Radboud University Nijmegen, The Netherlands (FCDC)
- Copyright (C) 2004-2007, Nijmegen Institute for Cognition and Information, The Netherlands (NICI)
- Copyright (C) 2004-2005, Universitatsklinikum Hamburg-Eppendorf, Germany (UKE)
- Copyright (C) 2003-2004, Center for Sensory Motor Interaction, University Aalborg, Denmark (SMI)
- Copyright (C) 1999-2003, Department of Medical Physics, Radboud University Nijmegen, The Netherlands (MBFYS)
The FieldTrip software is a toolbox, i.e. a library with functions, which in turn an depend on other functions. The release of this toolbox includes functions from other toolboxes that are covered under their respective licenses. See fieldtrip/external for details. Unauthorised copying and distribution of functions that are not explicitly covered by the GPL is not allowed.
Owner
- Name: FieldTrip toolbox
- Login: fieldtrip
- Kind: organization
- Location: Nijmegen, The Netherlands
- Website: http://www.fieldtriptoolbox.org
- Repositories: 8
- Profile: https://github.com/fieldtrip
JOSS Publication
Reducing the efforts to create reproducible analysis code with FieldTrip
Authors
Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands, Oxford Centre for Human Brain Activity, Department of Psychiatry, University of Oxford, United Kingdom, Wellcome Centre for Integrative Neuroimaging, University of Oxford, Oxford, United Kingdom
Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands
Tags
FieldTrip Toolbox reproducibility analysis pipeline open science MEG EEGGitHub Events
Total
- Issues event: 64
- Watch event: 73
- Delete event: 5
- Issue comment event: 189
- Push event: 135
- Pull request review comment event: 5
- Pull request review event: 5
- Pull request event: 71
- Fork event: 24
- Create event: 34
Last Year
- Issues event: 64
- Watch event: 73
- Delete event: 5
- Issue comment event: 189
- Push event: 137
- Pull request review comment event: 5
- Pull request review event: 5
- Pull request event: 71
- Fork event: 24
- Create event: 34
Committers
Last synced: 11 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Robert Oostenveld | r****d@g****m | 8,427 |
| Jan Mathijs Schoffelen | j****n@d****l | 1,485 |
| Jan-Mathijs Schoffelen | j****n@d****l | 1,403 |
| Jorn Horschig | j****g@d****l | 569 |
| Cristiano Micheli | m****2@g****m | 562 |
| Roemer van der Meij | r****j@d****l | 536 |
| Martin Vinck | m****k@g****m | 496 |
| Eelke Spaak | e****k@d****l | 478 |
| Stefan Klanke | s****e@d****l | 411 |
| Marcel van Gerven | m****n@g****m | 285 |
| Arjen Stolk | a****k@d****l | 281 |
| StolkArjen | a****8@g****m | 210 |
| Johanna Zumer | j****r@d****l | 184 |
| Nikolaas N. Oosterhof | n****f@u****t | 179 |
| Boris Reuderink | b****k@g****m | 154 |
| Vladimir Litvak | v****k@u****k | 151 |
| Roemer van der Meij | r****j@g****m | 111 |
| Jim Herring | j****g@d****l | 98 |
| Diego Lozano Soldevilla | d****a@d****l | 95 |
| Lilla Magyari | l****i@d****l | 87 |
| Ingrid Nieuwenhuis | i****s@g****m | 80 |
| Sarang Dalal | s****g@c****k | 78 |
| Joseph Dien | j****7@m****m | 71 |
| helenacockx | h****x@d****l | 63 |
| Tim Engelkes | t****s@d****l | 62 |
| Mats | m****s@d****l | 59 |
| Saskia Haegens | s****s@g****m | 56 |
| Jörn M. Horschig | j****n@a****m | 53 |
| Craig Richter | c****r@g****m | 52 |
| Tilmann Sander-Thoemmes | T****s@p****e | 50 |
| and 196 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 86
- Total pull requests: 234
- Average time to close issues: 9 months
- Average time to close pull requests: 2 months
- Total issue authors: 45
- Total pull request authors: 54
- Average comments per issue: 2.77
- Average comments per pull request: 2.26
- Merged pull requests: 147
- Bot issues: 0
- Bot pull requests: 3
Past Year
- Issues: 35
- Pull requests: 76
- Average time to close issues: 12 days
- Average time to close pull requests: 8 days
- Issue authors: 22
- Pull request authors: 17
- Average comments per issue: 1.31
- Average comments per pull request: 2.54
- Merged pull requests: 56
- Bot issues: 0
- Bot pull requests: 2
Top Authors
Issue Authors
- schoffelen (14)
- robertoostenveld (13)
- arnodelorme (6)
- vlitvak (3)
- NirOfir (3)
- GuilleSGCUPO (2)
- mcpiastra (2)
- asalazar4 (2)
- contsili (2)
- sinamakhdoomi (2)
- tchaase (2)
- chrisNatMEG (2)
- JoaoAmaro2001 (1)
- CDog1994 (1)
- VlastaKoudelka (1)
Pull Request Authors
- schoffelen (69)
- robertoostenveld (31)
- thht (9)
- nno (9)
- contsili (8)
- gpiantoni (7)
- mrkdsmith (6)
- matsvanes (6)
- mcpiastra (5)
- dnacombo (4)
- chrisNatMEG (4)
- StolkArjen (4)
- marcelzwiers (4)
- roemervandermeij (4)
- yarikoptic (3)